Crystal structure of pseudokopsinine and its salts

The X-ray diffraction study of an indoline alkaloid, pseudokopsinine, extracted from the plant Vinca erecta and its mono- and double salts is performed. The experimentally determined positions of Н atoms suggest the sp ³ hybridization of the indoline nitrogen atom in the base and salts. The pseudokopsinine base and double salt have an intramolecular Н bond between the NH group proton and the ether oxygen atom of the methoxycarbonyl group, which is absent in the monosalt and the related indolines. The intermolecular Н bonds and/or the packing efficiency cause a conformational change in F and Е heterocycles in the indoline hetero framework of pseudokopsinine salts in comparison with that observed in the base.     

Hydrolysis of coordinated aminoacetonitrile in a platinum(IV) complex. Crystal structure of [PtPy(NH<Subscript>2</Subscript>CH<Subscript>2</Subscript>COO)Cl<Subscript>3</Subscript>]

Heating of a hydrochloric acid solution of trans-PtPy(NH₂CH₂CN)Cl₄ results in the hydrolysis of coordinated aminoacetonitrile to aminoacetic acid with the formation of a five-membered chelate ring attached to platinum through the nitrogen atom of the amino group and the oxygen atom of the carboxy group. X-ray diffraction analysis of [PtPy(NH₂CH₂COO)Cl₃] is carried out. The crystals are monoclinic: space group C2/c, a = 21.704(2), b = 8.7027(7), c = 15.576(1) Å, β = 126.606(1)^o, V = 2361.8(3) ų, Z = 8; R _hkl = 0.057, wR = 0.141. In the neutral complex, the Pt atom has a distorted octahedral coordination. The equatorial plane is formed by a Cl atom (Pt-Cl, 2.284(3) Å), the N atom of the Py molecule (Pt-N, 2.062(8) Å), and the N and O atoms of the bidentate-chelating ligand (Pt-N, 2.039(8); Pt-O, 2.026(7) Å); two Cl atoms are arranged in the apical positions (Pt-Cl, 2.301(3) and 2.312(3) Å). The five-membered chelate ring has a flattened gauche conformation with an NCCO torsion angle of 19(1)°.     

Synthesis,crystal structures,and antibacterial activities of Schiff base zinc(II) complexes [Zn(L<Superscript>1</Superscript>)<Subscript>2</Subscript>] and [Zn(L<Superscript>2</Superscript>)<Subscript>2</Subscript>]

The reaction of cyclopentylamine with 2-hydroxy-1-naphthaldehyde and 5-nitrosalicylaldehyde, respectively, in methanol affords two new Schiff bases, 1-(cyclopentyliminomethyl)naphthalen-2-ol (HL¹) and 4-nitro-2-(cyclopentyliminomethyl)phenol (HL²). Two new zinc(II) complexes, [Zn(L¹)₂] (I) and [Zn(L²)₂] (II), derived from the Schiff bases, have been prepared and characterized by single-crystal X-ray diffraction, FT-IR, and elemental analysis. Complex I crystallizes in the monoclinic space group P2₁/c with a = 17.834(4), b = 14.738(3), c = 9.868(2) Å, β = 91.20(3)°, V = 2593.1(9) ų, Z = 4. Complex II crystallizes in the triclinic space group P \(\bar 1\) with a = 10.206(1), b = 10.502(1), c = 12.554(1) Å, α = 66.771(2)°, β = 78.133(2)°, γ = 76.292(2)°, V = 1191.8(1) ų, Z = 2. The Zn atom in each complex is coordinated by two N and two O atoms from two Schiff base ligands, forming a tetrahedral geometry. The Schiff bases and the complexes were assayed for antibacterial activities.     

Synthesis,crystal structures,and antibacterial activities of Schiff base nickel(II) and cadmium(II) complexes with tridentate Schiff bases

Reaction of tridentate Schiff bases with nickel and cadmium salts in methanol afforded two new mononuclear complexes, [Ni(L¹)₂] (I) and [Cd(L²)₂] (II), where L¹ and L² are the anions of 2-bromo-4-chloro-6-[(3-dimethylaminopropylimino)methyl]phenol (HL¹) and 2-bromo-4-chloro-6-[(3-morpholin-4-ylpropylimino)methyl]phenol (HL²), respectively. The complexes were characterized by singlecrystal X-ray diffraction (CIF files CCDC nos. 1428653 (I) and 1428654 for (II)), FT-IR, and elemental analysis. Complex I crystallizes in the monoclinic space group P2 ₁/c, with a = 8.8216(8), b = 14.0424(8), c = 11.8687(12) Å, β = 111.238(2)°, V = 1370.4(2) ų, Z = 2. Complex II crystallizes in the monoclinic space group P2 ₁/n, with a = 9.6774(4), b = 15.8970(6), c = 20.3144(7) Å, β = 90.408(2)°, V = 3125.1(2) ų, Z = 4. The metal atoms in the complexes are coordinated by two tridentate Schiff base ligands, forming octahedral coordination. The free Schiff bases and the complexes were assayed for antibacterial activities. Both complexes are more active against the bacteria than the free Schiff bases. Complex II has the MIC value of 0.39 μg mL^–1 against Bacillus subtilis.     

Salts of 2- or 3-haloalkylamines in the synthesis of <Emphasis Type="Italic">N</Emphasis>-aminoalkyl derivatives of heterocyclic and aromatic amines

Reactions of 2-haloethyl- or 3-halopropylamine salts with NH-substrates (indoline, 1,2,3,4-tetrahydroquinoline, aniline, and N-ethylaniline) in the presence of NaHCO₃ in water furnished various N-aminoalkyl derivatives of heterocyclic and aromatic amines.     

Synthesis,crystal structures,and antimicrobial activity of copper(II) and zinc(II) complexes derived from 2-bromo-4-chloro-6-[(2-morpholin-4-ylethylimino)methyl]phenol

An end-to-end azido-bridged dinuclear copper(II) complex [Cu₂L₂(μ_1,3-N₃)](NO₃) (I) and a mononuclear zinc(II) complex [ZnCl₂(HL)] ? CH₃OH (II), where L is 2-brom-4-chloro-6-[(2-morpholin- 4-ylethylimino)methyl]phenolate, have been prepared and characterized by elemental analyses, IR, and single crystal X-ray crystallographic determination (CIF files CCDC nos. 1415217 (I), 1415218 for (II)). The crystal of I is monoclinic: space group C2/c, a = 28.684(2), b = 7.1787(5), c = 18.292(1) Å, β = 117.887(3)°, V = 3329.1(4) ų, Z = 4. The crystal of II is monoclinic: space group P2₁/c, a = 10.8207(9), b = 12.3398(7), c = 14.9477(7) Å, β = 93.473(3)°, V = 1992.2(2) ų, Z = 4. The Schiff base ligand in I coordinates to the Cu atom through the phenolate O, imine N, and morpholine N atoms, while the Schiff base ligand in II coordinates to the Zn atom through the phenolate O and imine N atoms, with the morpholine N atom protonated. The effect of these complexes on the antimicrobial activity against Staphylococcus aureus, Escherichia coli, and Candida albicans was studied.     

Synthesis,crystal structure,and luminescence properties of a novel europium(III) complex

A novel europium(III) complex, [Eu(C₇H₅O₂)₂(C₇H₆O₂)₂(C₁₂H₈N₂)₂Cl], was synthesized and characterized by elemental analysis and single-crystal X-ray determination. It crystallizes in the monoclinic system, space group Cc with a = 17.2814(16), b = 17.9421(17), c = 14.9971(14) Å, β = 101.6510(10)°, Z = 4, ρ _c = 1.508 g/cm³, μ = 1.496 mm^?1, the final R = 0.0516 and wR = 0.1267 for 6435 observed reflections with I > 2σ(I). Structural analysis shows that the Eu(III) atom is nine-coordinated by one chlorine atom, four N atoms of two 1,10-phenanthroline (Phen) ligands, and four O atoms from four carboxybenzene ligands, to form a distorted tricapped trigonal prism. The luminescence spectrum of the complex indicates that the intensity of the emission wavelength at 612 nm is strongest among all emission wavelengths and the second phen ligand shows an enhancement effect on the luminescence of the complex.     

Synthesis,Structures, and Antibacterial Activities of Two Methanol Coordinated Zinc Complexes with Tetradentate Bis-Schiff Bases

Two methanol coordinated zinc(II) complexes, [Zn(L¹)(MeOH)] (I) and [Zn(L²)(MeOH)] (II), where L¹ and L² are the dianionic form of N,N'-bis(5-fluorosalicylidene)ethane-1,2-diamine and N,N'-bis(5-fluorosalicylidene)propane-1,2-diamine, respectively, have been synthesized and characterized by physical chemical methods and single crystal X-ray diffraction (CIF files CCDC nos. 950907 (I) and 950908 (II)). Crystallographic data for I: triclinic, P \(\bar 1\), a = 8.8765(8), b = 9.6577(9), c = 10.5117(9) Å, α = 114.590(2)°, β = 91.648(3)°, γ = 97.114(3)°, V = 809.87(13) ų, Z = 2, R ₁ = 0.0307, wR ₂ = 0.0698. Crystallographic data for II: orthorhombic, Pca2₁, a = 22.946(2), b = 7.6942(7), c = 9.6234(8) Å, V = 1699.0(2) ų, Z = 4, R ₁ = 0.0320, wR ₂ = 0.0676. X-ray crystal structural study indicated that the coordination environment around each zinc(II) atom in the complexes is a five-coordinated distorted pyramid in which the apical position is occupied by a methanol oxygen atom, and the basal plane is defined by the nitrogen and oxygen donor atoms of the Schiff base ligand. The antibacterial activities of the complexes were assayed.     

Structure and Fluxional Behavior of Phenylmercury Derivatives of N,N'-Diarylform(benz)amidines

Activation barriers for fast 1,3-N,N' migrations of phenylmercury groups in the corresponding derivatives of N,N'-di(p-tolyl)form(benz)amidines have been calculated by density functional theory B3LYP/Gen, 6-311++G(d,p)/SDD to be ΔE _ZPE ^≠ = 4.5 and 3.0 kcal/mol. The results correspond to the data of dynamic NMR, which have shown the upper limit of activation barriers of these rearrangements (ΔG^≠) to be below 8 kcal/mol. The calculations have shown that the most stable is the E-syn form of N-phenylmercury-N,N'-di(p-tolyl)form(benz)amidines stabilized by supplementary intramolecular coordination of mercury atom with imine nitrogen atom of the amidine triad.     

Quantum-chemical study of lutetium,ytterbium, and gadolinium phthalocyaninates PcLnCl

Structural parameters and IR spectra of the (¹A₁//C_4v)-PcLuCl, (²B₂//C_4v)-PcYbCl, and (⁸A₂//C_4v)-PcGdCl molecules, (²A₂//C_4v)-Pc⁺LuCl, (3B₁//C_4v)-Pc⁺YbCl, and (⁹A₁//C_4v)-Pc⁺GdCl cations, (¹A_g//D_2h)-PcLuCl₂LuPc dimer, and PcLuCl···PcLuCl coaxial molecular pair have been simulated using the DFT (U) PBE0/SDD method. The PcLnCl (Ln = Lu, Yb, Gd) molecules have exhibited the equilibrium Ln–N bond length of 222, 223, and 230 pm, the Ln–Cl bond length of 245, 246, and 253 pm, the dipole moment of 4.73, 4.57, and 4.84 D directed from Cl to Ln, and ionization potential of 6.6 eV. β-Decay (¹A₁//C_4v)-Pc¹⁷⁷LuCl → (¹A₁//C_4v)-(Pc^177mHfCl)⁺ occurs with no significant change of the charge on the metal atom.     

Tautomerism of aza cycles: II. Synthesis and structure of 5-substituted 3-(2-hydroxyethylsulfanyl)-1<Emphasis Type="Italic">H</Emphasis>-1,2,4-triazoles and their salts. Preference of the 1H,4<Emphasis Type="Italic">H</Emphasis>-1,2,4-triazolium tautomers

New complexing agents, potentially tautomeric 3-(2-hydroxyethylsulfanyl)-1H-1,2,4-triazole, its 5-methyl-and 5-phenyl-substituted analogs, and some their salts, were synthesized, and their structure was discussed on the basis of the ¹H and ¹³C NMR, IR, and mass spectra, X-ray diffraction data, and published data. In keeping with the rule formulated previously for N-unsubstituted 1,2,4-triazoles having dissimilar substituents, the synthesized compounds were found to exist as 3-(2-hydroxyethylsulfanyl)-5-R-1H-1,2,4-triazole tautomers (3-R_A-5-R_D-1H-1,2,4-triazoly). They are protonated at the nitrogen atom in position 4 of the triazole ring. The ¹H and ¹³C NMR spectra of these compounds in trifluoroacetic acid suggest the presence of two forms due to equilibrium between the neutral and protonated species. Analysis of the crystallographic data for the triazolium salts and published data showed preference of the 1H,4H-1,2,4-triazolium tautomer.     

New complex of manganese(II) with schiff base derived from furaldehyde and diethylenetriamine

A new manganeses(II) complex MnLCl₂ · CH₃OH (L = N,N′-bis(furaldehyde)diethylenetriamine) was synthesized and characterized by X-ray crystallographic analysis. The crystals are orthorhombic, space group Pnma with cell parameters a = 20.998(6), b = 13.314(5), c = 6.785(8) Å, Z = 4, R ₁ = 0.0609, and wR₂ = 0.2116. The coordination geometry around Mn(II) atom is a trigonal-bipyramidic containing one tridenate ligand L and two Cl^? ions.     

Structure of A Coordination Polymer [Cu(En)<Subscript>2</Subscript>CrO<Subscript>4</Subscript>]<Subscript><Emphasis Type="Italic">n</Emphasis></Subscript>

The crystal structure of [Cu(En)₂CrO₄]_n (En is ethylenediamine) is determined: a = 14.7359(4) Å, b = 9.8083(3) Å, c = 14.2664(4) Å, V = 2061.98(10) ų, space group Cmce, Z = 8, d_x = 1.931 g/cm³. It is demonstrated that the studied phase is isostructural with [Сu(Еn)₂SO₄]_n. A pseudotetragonal copper atom coordination (Cu–N 2.0204 Å and 2.0244 Å, ∠N–Cu–N 84.73°) is completed to distorted octahedral by two oxygen atoms of chromate anions (Cu–O 2.433 Å and 2.380 Å).     

Synthesis,Crystal Structures,and Biological Activity of Manganese(III) Complexes Derived from BIS-Schiff Bases

Two new manganese(III) complexes, [Mn^IIIL¹(Dca)(MeOH)] (I) and [Mn^IIIL₂(N₃)₂] (II), where L¹ and L² are the dianionic form of N,N'-3,4-chlorophenylene-bis(5-methylsalicylaldimine) (H₂L¹) and N,N'-3,4-nitrophenylene-bis(5-methylsalicylaldimine) (H₂L₂), respectively, and Dca is dicyanoamide, have been synthesized and characterized. The complexes were characterized by elemental analyses, IR, UV-Vis spectra, molar conductivity, and single crystal X-ray diffraction (CIF files nos. 1054200 (I), 1054336 (II)). The Mn atoms in the structures are in octahedral coordination. In the crystal structure of complex I, molecules are linked through intermolecular O–H···N hydrogen bonds to form 1D chains running along the x axis. In both complexes, there exist π···π interactions among molecules. The complexes and the Schiff bases were assayed for antibacterial activities against three Gram-positive bacterial strains (B. subtilis, S. aureus, and St. faecalis) and three Gram-negative bacterial strains (E. coli, P. aeruginosa, and E. cloacae) by MTT method.     

Synthesis,X-ray crystal structures,and antibacterial activities of Schiff base nickel(II) complexes with similar tetradentate Schiff bases

Two new mononuclear complexes, [NiL¹] · CH₃OH (I) and [NiL²] (II), have been prepared from the tetradentate Schiff bases N,N'-bis(5-methylsalicylidene)ethylenediamine (H₂L¹) and N,N'-bis(5-methylsalicylidene)- o-phenylenediamine (H₂L₂), respectively. The complexes have been characterized by physico-chemical and spectroscopic methods, as well as single-crystal X-ray determination (CIF files nos. 1428969 (I), 1428968 (II)). Complex I crystallizes in the triclinic space group P1 with a = 6.7387(14), b = 10.7010(17), c = 12.681(2) Å, α = 87.059(2)°, β = 88.828(2)°, γ = 89.901(2)°, V = 913.0(3) ų, Z = 2. Complex II crystallizes in the monoclinic space group P2₁/n with a = 12.1437(11), b = 8.0537(8), c = 18.4545(18) Å, β = 105.088(2)°, V = 1742.7(3) ų, Z = 4. The nickel atoms in the complexes are coordinated by two phenolate O and two imine N atoms of the tetradentate Schiff base ligands, forming square planar coordination. The complexes and the Schiff base compounds were assayed for antibacterial activities against three Gram-positive bacterial strains (B. subtilis, S. aureus, and St. faecalis) and three Gram-negative bacterial strains (E. coli, P. aeruginosa, and E. cloacae) by MTT method. As a result, the complexes showed effective antimicrobial activity against the microorganisms tested.     

Synthesis,crystal structure,and fluorescence properties of a two-dimensional copper(II) complex with Schiff base

A new Schiff base ligand C₁₉H₁₃NO₅(H₂L) was synthesized using 2-aminoterephthalic acid and 2-hydroxy-1-naphthaldehyde. A complex of this ligand [Cu(C₁₉H₁₁NO₅)(C₂H₆O)] _n was synthesized and characterized by IR, UV, fluorescence spectroscopy and X-ray diffraction single-crystal analysis. The crystal crystallizes in the monoclinic system, space group Pbca with a = 8.7745(18), b = 18.613(4), c = 24.644(5) Å, V = 4024.9(14) ų, Z = 8, F(000) = 1816, S = 1.009, ρ _calcd = 1.462 g cm^?3, μ = 1.122 mm^?1, the final R = 0.0477 and wR = 0.1594 for 4609 observed reflections (I > 2σ(I)). The Cu(II) is five-coordinated by one N atom and two O atoms from the Schiff base ligand and two carboxylate O atoms from another two ligands to form a distorted square-pyramidal geometry. Each ligand serves as a bridging ligand to link Cu²⁺ ions, leading to a two-dimensional coordination polymer. The fluorescence properties of the ligand and complex were also studied. The ligand shows strong fluorescence, and the fluorescence intensity is weakened after the Cu(II) complex formed.     

Diphenylguanidinium (ethylenediaminetetraacetato)hydroxogermanate hydrate (HDphg)[Ge(OH)(Edta)] · H<Subscript>2</Subscript>O: Synthesis,physicochemical characterization,and crystal structure

The onium compound based on the germanium(IV) complex with ethylenediamine-N,N,N ¹,N ¹-tetraacetic acid (H₄Edta) and diphenylguanidine (Dphg), (HDphg)[Ge(OH)(Edta)] · H₂O, has been isolated in the solid state and studied by physicochemical methods. Its crystal structure has been determined by the X-ray diffraction method. The crystals are monoclinic, a = 7.0179(9) Å, b = 28.797(8) Å, c = 13.477(2) Å, β = 104.301(12)°, V = 2639.3(9) Å₃, Z = 4, space group P2₁/c, R = 0.045 for 2524 reflections with I > 2σ(I). The onium compound is built of diphenylguanidinium cations HDphg⁺, [Ge(OH)(Edta)]^? anions, and water molecules of crystallization. In the complex anion, the Ge atom is coordinated by two nitrogen atoms and three oxygen atoms of three acetate arms of the pentadentate chelating ligand Edta^4? (av. Ge-N, 2.095(4) Å; Ge-O, 1.891(3) Å). The fourth acetate arm is deprotonated and is not involved in coordination with the metal. The coordination of the metal atom is completed to an octahedral one by the O atom of the hydroxo ligand (Ge-OH 1.759(3) Å). The structural units in crystal are linked by a system of hydrogen bonds.     

Structure of arsenic 8-mercaptoquinolinate: Synthesis and crystal structure of arsenic 4-methoxy-8-mercaptoquinolinate As[C<Subscript>9</Subscript>H<Subscript>5</Subscript>(OCH<Subscript>3</Subscript>)NS]<Subscript>3</Subscript>

Arsenic 4-methoxy-8-mercaptoquinolinate As[C₉H₅(4-OCH₃)NS]₃ (I) was synthesized and studied by X-ray diffraction. Crystals are trigonal: space group R3, a = b = 13.9867(4) Å, c = 12.4991(5) Å, γ = 120°, V = 2117.58(12) ų, ρ = 1.519 g/cm³, Z = 3. An arsenic atom in the crystal structure occupies a special position on axis 3. The structural unit of the crystal (neutral complex I) has symmetry C3. 4-Methoxy-8-mercaptoquinoline acts as a bidentate (N,S-) ligand. The coordination polyhedron of the arsenic atom is a symmetric octahedron (3S + 3N) or, with allowance for the lone electron pair, ψ-one-capped octahedron (3S + 3N + E). Bond lengths are as follows: As-S, 2.3179(7)Å; As…N 2.688(3) Å. The geometries of coordination polyhedra of arsenic atoms are compared in the crystal structures of As(C₉H₆NS)₃, As[C₉H₅(2-CH₃)NS]₃, and As[C₉H₅(4-CH₃)NS]₃.     

Comparative reactivity of substituted 1,3-and 1,4-thiasilinane <Emphasis Type="Italic">S</Emphasis>-oxides in the sila-Pummerer rearrangement and inversion of the thiocarbonyl group

The thermal sila-Pummerer rearrangement of diastereomeric 2,3,3-trimethyl-1,3-thiasilinane S-oxides was studied. Introduction of the methyl group in the 2 position of 3,3-trimethyl-3-thiasilinane S-oxide slows down the rearrangement. When heated in CCl₄, the trans isomer (2-Me_eq, SO_eq) converts into the cis isomer (2-Me_eq, SO_ax) which rapidly rearranges into 2,2,7-trimethyl-1,6,2-oxathiasilepane. On the contrary, the isomeric 2,4,4-trimethyl-1,4-thiasilinane S-oxide is thermally stable up to 160°C in DMSO. The inversion at the sulfur atom in 2,3,3-trimethyl-1,3-thiasilinane S-oxides and 2,4,4-trimethyl-1,4-thiasilinane S-oxides under the action of triethyloxonium tetrafluoroborate was studied. The trans isomer of 2,3,3-trimethyl-1,3-thiasilinane S-oxide (2-Me_eq, SO_eq) forms with Et₃O⁺BF ₄ ^? a salt which decomposes in two ways. The first involves recovery of the starting sulfoxide due to Sn2 substitution at the carbon atom of the ethoxy group, and the second, convertion into the cis isomer (2-Me_eq, SO_ax) which rearranges into 2,2,7-trimethyl-1,6,2-oxathiasilepane. Under the same conditions, the cis isomer of 2,3,3-trimethyl-1,3-thiasilinane S-oxide (2-Me_eq, SO_eq) decomposes to form siloxanes. trans-2,4,4-Trimethyl-4-thiasilinane S-oxide (2-Me_eq, SO_eq) under the action of Et₃O⁺BF ₄ ^? convers into the cis isomer (2-Me_eq, SO_ax). The B3LYP/6-311G(d,p) theoretical analysis showed that the thermal inversion at the sulfur atom in the compounds studied has a high energy barrier.     

Synthesis and crystal structure of the π copper(I) cyanide complex with N,N′-diallyl thiocarbamide 2CuCN · (C<Subscript>3</Subscript>H<Subscript>5</Subscript>NH)<Subscript>2</Subscript>CS

Crystals of the π copper(I) cyanide complex with N,N′-diallyl thiocarbamide, 2CuCN · (C₃H₅NH)₂CS (I), are synthesized from an aqueous-methanol solution of potassium nitroprusside, diallyl thiocarbamide on a copper electrode using the method of alternating-current electrochemical synthesis. The crystals are monoclinic: space group P2₁/n, a = 6.9440(5) Å, b = 13.760(1)) Å, c = 12.733(1) Å, β = 97.280(9)°, V = 1206.8(2) ų, Z = 4, R = 0.0361, R _w = 0.0362 for 2836 independent reflections with F ≥ 4σ(F). A unique polymeric structure is built due to the Cu(I)-(C=C) π bond and the bridging function of the thioamide S atom of the ligand molecule and one of the two independent cyano groups.