Gas-phase ionic syntheses of amino acids: beta versus alpha

Both theoretical and experimental studies are reported for the gas-phase reactions of protonated hydroxylamine with acetic and propanoic acids which yield protonated glycine and alanine, GlyH+ and AlaH+, respectively. The key step for these reactions is an insertion of the amino group into a C-H bond. For the formation of AlaH+, the reaction barrier for insertion into a Cbeta-H bond is ca. 5 kcal.mol-1 lower than that for the insertion into a Calpha-H bond; the product beta-AlaH+ is ca. 6 kcal mol-1 lower in energy than alpha-AlaH+. Thus, both kinetics and thermodynamics favor formation of the beta-form. The energetic preference for the beta-form is due to more efficient hydrogen bonding between the amino group and the carbonyl oxygen in the limiting transition structure and in the beta-AlaH+ product. These theoretical results are in excellent accord with selected ion flow tube measurements of the gas-phase synthesis which show striking specificity for the beta-isomer according to multi-collision-induced dissociation of the AlaH+ product ion. The results suggest that Gly and beta-Ala found in carbonaceous chondrite meteorites are products of interstellar chemistry.     

Intrinsic conformational preferences of C(alpha,alpha)-dibenzylglycine

The intrinsic conformational preferences of C (alpha,alpha)-dibenzylglycine, a symmetric alpha,alpha-dialkylated amino acid bearing two benzyl substituents on the alpha-carbon atom, have been determined using quantum chemical calculations at the B3LYP/6-31+G(d,p) level. A total of 46 minimum energy conformations were found for the N-acetyl- N'-methylamide derivative, even though only nine of them showed a relative energy lower than 5.0 kcal/mol. The latter involves C 7, C 5, and alpha' backbone conformations stabilized by intramolecular hydrogen bonds and/or N-H...pi interactions. Calculation of the conformational free energies in different environments (gas-phase, carbon tetrachloride, chloroform, methanol, and water solutions) indicates that four different minima (two C 5 and two C 7) are energetically accessible at room temperature in the gas phase, while in methanol and aqueous solutions one such minimum (C 5) becomes the only significant conformation. Comparison with results recently reported for C (alpha,alpha)-diphenylglycine indicates that substitution of phenyl side groups by benzyl enhances the conformational flexibility leading to (i) a reduction of the strain of the peptide backbone and (ii) alleviating the repulsive interactions between the pi electron density of the phenyl groups and the lone pairs of the carbonyl oxygen atoms.     

A highly sensitive spectrophotometric determination of cadmium with alpha,beta,gamma,delta-Tetrakis(4-N-trimethylaminophenyl)-porphine

A new and highly sensitive reagent is proposed for spectrophotometric determination of cadmium. alpha,beta,gamma,delta-Tetrakis (4-N-trimethylaminophenyl) porphine forms a chelate with cadmium in alkaline solution with a molar absorptivity of 5.77 x 10(5)l. mole(-1).cm(t1), the largest value reported to date for a cadmium complex. An extraction method is described for selective separation of cadmium.     

Remarkably selective reduction of the alpha,beta-carbon-carbon double bond in highly activated alpha,beta,gamma,delta-unsaturated alkenes by the InCl3-NaBH4 reagent system

A combination of sodium borohydride and a catalytic amount of indium(III) chloride in acetonitrile reduces exclusively the alpha,beta-carbon-carbon double bond in alpha,beta,gamma,delta-unsaturated diaryl ketones, dicarboxylic ester, cyanoester, and dicyano compounds.     

Ene-diamine versus imine-amine isomeric preferences

Cyanide-catalyzed aldimine coupling was employed to synthesize compounds with 1,2-ene-diamine and alpha-imine-amine structural motifs: 1,2,N,N'-tetraphenyletheylene-1,2-diamine (13) and (+/-)-2,3-di-(2-hydroxyphenyl)-1,2-dihydroquinoxaline (17), respectively. Single-crystal X-ray diffraction provided solid-state structures and density functional theory calculations were used to probe isomeric preferences within this and the related hydroxy-ketone/ene-diol system. The ene-diamine and imine-amine core structures were calculated (B3LYP/6-311++G(d,p)) to be essentially identical in energy (DeltaG = 0.2 kcal/mol in favor of the imine-amine, within the error of the calculation). However, additional effects-such as pi conjugation-in 13 render an ene-diamine structure that is slightly more stable than the imine-amine tautomer (14) (DeltaG = 0.2-0.7 kcal/mol, within the error of the calculation). In contrast, the intramolecular hydrogen bonding present in 17 significantly favors the imine-amine isomer over the ene-diamine tautomer (18) (DeltaG = 7.2-8.9 kcal/mol). For both 13 and 17, the optimized calculated structures (B3LYP/6-31+G(d')) are identical to those observed by single-crystal X-ray diffraction.     

Dual-wavelength spectrophotometric determination of copper in sea-water with alpha,beta,gamma, degrees -tetrakis(1-methylpyridinium-4-yl) porphine

Copper has been determined by dual-wavelength spectrophotometry with alpha,beta,gamma, degrees -tetrakis(1-methylpyridinium-4-yl) porphine (TMPyP). The difference in absorbance at the Soret band of the copper complex (423 nm) and that of TMPyP (446 nm) was measured. Copper in a coastal sea-water sample was preconcentrated with a Chelex-100 separation in which l-cysteine was used as eluent. This combination could determine copper at the ng/ml and sub-ng/ml level.     

Synthesis of delta-tributylstannyl-alpha,beta,gamma,delta-unsaturated aldehydes from pyridines

Zincke aldehydes, which are readily available from the ring-opening reaction of pyridinium salts, are easily converted into delta-tributylstannyl-alpha,beta,gamma,delta-unsaturated aldehydes (stannyldienals) by the action of tributylstannyllithium. This reaction appears to proceed via 1,6-stannyllithium addition/elimination of lithium dialkylamide. Several stannyldienals of significant utility for the synthesis of polyene natural products have been made by this route, which proceeds in modest yields, but is successful on multigram scale using inexpensive reagents. Simple stannylenals and stannylenones are similarly available from the corresponding vinylogous amides.     

Analytical application of porphyrins-I Spectrophotometric determination of ultramicro amounts of copper with alpha,beta,gamma,delta-tetra-(3-N-methylpyridyl)porphine

A new water-soluble porphyrin, alpha,beta,gamma,delta-tetra(3-N-methylpyridyl)porphine [T(3-MPy)P], has been synthesized, and its reaction with copper(II) studied spectrophotometrically. Sensitive methods for the determination of copper at ppM level have been established. The spectrophotometric sensitivity and relative standard deviation of the recommended procedure for copper are 0.18 ng/cm(2) (for A = 0.001) and 1.0%, respectively. The interference of 19 ions and 20 salts has been examined, and found to be minimal. The methods established could be applied to the determination of copper in water samples with satisfactory results.     

Determination of alpha,beta, X-ray and gamma emitting radionuclides in reactor components and fuel assemblies from NPP V1 Jaslovske Bohunice

The radionuclides in reactor and fuel construction parts of the V1 Jaslovske Bohunice nuclear power plant (NPP V1) were identified and their activity was measured. Samples from reactor and fuel assemblies such as control rod connection rod, shielding/absorber parts of fuel rod, neutron in-core measurement channels, pressure vessel basic construction material and internal cladding, core barrel and protective tube unit were analyzed. Activity concentrations of ⁶⁰Co, ⁵⁵Fe, ^63,59Ni, ⁹⁰Sr, ⁹⁹Tc, ⁹³Mo, ⁹⁴Nb, transuranic elements were determined. Analytical and sampling methods are briefly described for the measured radionuclides. The presented results were used for characterization of the waste during the decommissioning of NPP V1 nuclear reactors.     

Dissociation energies and charge distribution of the Co-NO bond for nitrosyl-alpha,beta,gamma,delta-tetraphenylporphinatocobalt(II) and nitrosyl-alpha,beta,gamma,delta-tetraphenylporphinatocobalt(III) in benzonitrile solution

The first two series of Co-NO bond dissociation enthalpies in benzonitrile solution were determined for 12 cobalt(II) nitrosyl porphyrins and for 12 cobalt(III) nitrosyl porphyrins by titration calorimetry with suitable thermodynamic cycles. The results display that the energy scales of the heterolytic Co(III)-NO bond dissociation, the homolytic Co(III)-NO bond dissociation, and the homolytic Co(II)-NO bond dissociation are 14.7-23.2, 15.1-17.5, and 20.8-24.6 kcal/mol in benzonitrile solution, respectively, which not only indicates that the thermodynamic stability of cobalt(II) nitrosyl porphyrins is larger than that of the corresponding cobalt(III) nitrosyl porphyrins for homolysis in benzonitrile solution but also suggests that both cobalt(III) nitrosyl porphyrins and cobalt(II) nitrosyl porphyrins are excellent NO donors, and in addition, cobalt(III) nitrosyl porphyrins are also excellent NO(+) contributors. Hammett-type linear free energy analyses suggest that the nitrosyl group carries negative charges of 0.49 +/- 0.06 and 0.27 +/- 0.04 in T(G)PPCo(II)NO and in T(G)PPCo(III)NO, respectively, which indicates that nitric oxide is an electron-withdrawing group both in T(G)PPCo(II)NO and in T(G)PPCo(III)NO, behaving in a manner similar to Lewis acids rather than to Lewis bases. The energetic and structural information disclosed in the present work is believed to furnish hints to the understanding of cobalt nitrosyl porphyrins' biological functions in vivo.     

Comparison and correlation of in vitro, in vivo and in silico evaluations of alpha, beta and gamma cyclodextrin complexes of curcumin

In the present study investigated the effect of curcumin (CUR) alpha (α), beta (β) and gamma (γ) cyclodextrin (CD) complexes on its solubility and bioavailability. CUR the active principle of turmeric is a natural antioxidant agent with potent anti-inflammatory activity along with chemotherapeutic and chemopreventive properties. Poor solubility and poor oral bioavailability are the main reasons which preclude CUR use in therapy. Extent of complexation was β-CD complex (82 %) > γ-CD (71 %) > α-CD (65 %). Pulverization method resulted in significant enhancement of CUR (0.002 mg/ml) solubility with CUR α-CD complex (0.364 mg/ml) > CUR β-CD complex (0.186 mg/ml) > CUR γ-CD complex (0.068 mg/ml). Gibbs-free energy and in silico molecular docking studies favour formation of α-CD complex > β-CD complex > γ-CD complex. With reference to CUR, relative bioavailability of CUR α-CD, CUR β-CD and CUR γ-CD complexes were 460, 365 and 99 % respectively. CUR–CD complexes exhibited increased bioavailability with an increase in t_½, tmax, Cmax, AUC, Ka, and MRT; and a decrease in Ke, clearance and Vd values. AUC increase was CUR α-CD complex > CUR β-CD complex > CUR γ-CD complex. Significant difference (p < 0.05) was observed between CUR α-CD complex and CUR γ-CD complex by one-way ANOVA and Dunnett’s post hoc test for multiple comparison analysis. Correlation observed between in vitro, in vivo and in silico methods indicates potential of in silico and in vitro methods in CD selection.     

Electron ionization mass spectral fragmentation of cholestane-3beta,4alpha,5alpha-triol and cholestane-3beta,5alpha,6alpha/beta-triol bis- and tris-trimethylsilyl derivatives

The electron ionization (EI) mass spectral fragmentation of the bis- and tris-trimethylsilyl derivatives of cholestane-3beta,4alpha,5alpha-triol, cholestane-3beta,5alpha,6beta-triol and cholestane-3beta,5alpha,6alpha-triol was investigated. The EI mass spectrum of the 3beta,4alpha-bis-trimethylsilyl derivative of cholestane-3beta,4alpha,5alpha-triol exhibits interesting fragment ions at m/z 142 and 332 resulting from the initial loss of TMSOH between the carbons 2 and 3 and subsequent retro-Diels-Alder (RDA) cleavage of the ring A. Trimethylsilyl transfer between the 4alpha- and the 5alpha-hydroxy groups acts significantly before RDA cleavage affording an ion at m/z 404. Complete silylation of cholestane-3beta,4alpha,5alpha-triol strongly stabilizes the molecule, affording an abundant molecular ion at m/z 636 and decreasing the abundance of the RDA cleavage. Loss of water (from the non-silylated 5alpha-hydroxy group) plays a very important role during the decomposition of the molecular ion of 3beta,6alpha/beta-bis-trimethylsilyl derivatives of cholestane-3beta,5alpha,6alpha/beta-triols. These derivatives appear to be very useful in assigning the configuration of the carbon 6. This assignment is based on the abundance of the fragment ions at m/z 321, 367 and 403, which are more prominent in the EI mass spectrum of the beta-isomer. In contrast, EI mass spectra of the tris-trimethylsilyl derivatives of cholestane-3beta,5alpha,6beta-triol and cholestane-3beta,5alpha,6alpha-triol differ only slightly and appear to be poorly informative.     

How (77)Se NMR chemical shifts originate from pre-alpha, alpha, beta, and gamma effects: interpretation based on molecular orbital theory

Plain rules founded in a theoretical background are presented that can be used to determine the structure of selenium compounds on the basis of delta(Se) data and to predict delta(Se) data from a given structure with satisfactory accuracy. As a first step to establish such rules, the origin of delta(Se) is elucidated on the basis of MO theory. The Se(2-) ion was chosen as the standard for the analysis. The concept of the pre-alpha effect is proposed, which is defined as the downfield shift due to protonation of a lone-pair orbital of Se. The pre-alpha effect of two protons in H(2)Se is explained by the generation of double sigma(Se--H) and sigma*(Se--H) through protonation of the spherical Se(2-) ion. The orbitals, together with n(p)(Se), result in effective transitions for the pre-alpha effect. The alpha effect is the downfield shift caused by the replacement of Se--H by Se--Me. The extension of HOMO-2 [4p(y)(Se)], HOMO-1 [4p(x)(Se)], and HOMO [4p(z)(Se)] over the whole Me(2)Se molecule is mainly responsible for the alpha effect. The beta effect originates not from the occupied-to-unoccupied (psi(i)-->psi(a)) transitions but from the occupied-to-occupied (psi(i)-->psi(j)) transitions. Although psi(i)-->psi(j) transitions contribute to upfield shifts in Me(2)Se, the magnitudes become smaller as the methyl protons are substituted by Me groups one after another. The gamma effect of upfield shifts is also analyzed, although complex. The effect of p(Se)-pi(C==C) conjugation is analyzed in relation to the orientational effect. Contributions from each MO (psi(i)) and each psi(i)-->psi(a) transition are evaluated separately, by using a utility program derived from the Gaussian 03 program suite (NMRANAL-NH03G). The treatment enables us to visualize and understand the origin of (77)Se NMR chemical shifts.     

Subunit separation (alpha,alpha',beta) of cryptomonad biliproteins

Abstract— Phycocyanin 645, phycocyanin 612 and phycoerythrin 545 are biliproteins isolated from the cryptomonad algae, Chroornonas species, Hemiselmis virescens and Rhodomonas lens, respectively. The protein has α and β subunits. which are separated on an ion exchange column by using a urea gradient and omitting 2-mercaptoethanol from the solvent. This separation establishes that the α and β subunits are not joined by disulfide bonds. In addition it has recently been shown that mercaptoethanol can produce spurious results in the calculation of the chromophore contents of these biliproteins (Guard-Friar and MacColl, 1984). The mercaptoethanol-free experiments allow analysis of the chromophore content in a rapid and artifact-free manner. When the ion exchange chromatography of phycocyanin 645 is manipulated by changing the type of urea gradient, two distinct a subunit fractions are obtained. These two fractions have identical visible absorption spectra but different amino acid compositions. At least two different gene products are, thus. responsible for the a subunits. The sole chromophore on the two a subunits of phycocyanin 645 is the unique 697-nm bilin as seen in acidic urea. Its reactivity with mercaptoethanol is determined. The α subunits of phycoerythrin 545 have two different bilins: cryptoviolin and phycoerythrobilin. Phycocyanobilin is the chromophore on the α subunit of phycocyanin 612.