Manipulation and characterization of xenon-metalloporphyrin complexation with a scanning tunneling microscope

The formation of a series of Xe-CuEtioI [Cu(II) etioporphyrin I] complexes on Cu(001) surface was identified by scanning tunneling microscopy (STM) at cryogenic condition. The binding sites of xenon to CuEtioI molecule were directly revealed by high-resolution STM images in combination with controlled manipulation. The interaction between xenon atoms and CuEtioI in the on-top configuration is suggestive of a charge-induced dipole interaction. The structural parameters obtained with the STM complement results from spectroscopic studies of van der Waals complexes.     

Deconvolution of STM images using entropy as a regularization functional

The Maximum Entropy approach is applied to restore and sharpen scanning tunneling microscopy (STM) images with atomic resolution. Based on the STM theory of Tersoff and Hamann the process of data acquisition can be approximated by the convolution of a localised atomic density of states (i.e. narrow spots in the reconstruction) of the sample and a Gaussian resolution function which limits the resolution. In STM practice a good and robust estimation of the atomic core positions is necessary for different reasons, such as to be able to calculate the characteristics of the atomic lattice or to study non-periodicities.     

Deconvolution of STM images using entropy as a regularization functional

The Maximum Entropy approach is applied to restore and sharpen scanning tunneling microscopy (STM) images with atomic resolution. Based on the STM theory of Tersoff and Hamann the process of data acquisition can be approximated by the convolution of a localised atomic density of states (i.e. narrow spots in the reconstruction) of the sample and a Gaussian resolution function which limits the resolution. In STM practice a good and robust estimation of the atomic core positions is necessary for different reasons, such as to be able to calculate the characteristics of the atomic lattice or to study non-periodicities.     

STM imaging of a heptanuclear ruthenium(II) dendrimer, mono-add layer on graphite

Scanning tunneling microscopy (STM) and molecular mechanics calculations were used to investigate the long-range packing and the structure of an heptanuclear ruthenium (II) dendritic species, as a PF6- salt. STM imaging was carried out on a mono-add layer of the ruthenium dendrimer formed by physisorption from a 1,2,4-trichlorobenzene solution at the liquid-graphite interface. The packing of the molecules on the surface was visualised by the formation of ordered patterns and a distance of 27 +/- 2 A was measured between two adjacent lamellae. The comparison of this dimension with the molecular-modelling data indicates that the lamellae were formed by rows of dendrimer molecules in which the counterions (PF6-) were strongly associated with the Ru atoms. The images acquired with higher spatial resolution revealed the presence of repeating units within the lamellae. The comparison of the STM images with the modelling results allowed the attribution of the repeating units observed in the imaged pattern to the STM signature of single dendrimer molecules.     

Electric field effect on the vibration of single CO molecules in a scanning tunneling microscope junction

A low-temperature scanning tunneling microscope (STM) and ab initio calculations were used to study the electric field effect on the vibration of single CO molecules in an STM junction at 13 K. The vibrational energy of CO molecules adsorbed on silver atoms, measured by STM-based inelastic electron tunneling spectroscopy, depends on the direction of the electric field applied between the STM tip and the silver species. This characteristic can be explained by the charge separation model. The electric field modifies the binding characteristics of CO on silver as a result of a change in the charged states of the species, which leads to an increase (or a decrease) of the energies of the hindered rotation and the CO stretch on silver.     

Imaging and vibrational spectroscopy of single pyridine molecules on Ag(110) using a low-temperature scanning tunneling microscope

A scanning tunneling microscope (STM) was used to extract the images of single, isolated pyridine molecules adsorbed on Ag(110) and to record their vibrational spectrum at 13 K. On the STM image, the pyridine molecule appears as an elongated protrusion along the [001] direction on top of a silver atom, indicating that it is bonded through its nitrogen lone pair electrons. STM inelastic electron tunneling spectroscopy of the adsorbed pyridine revealed C-D and C-H stretch modes at 282 and 378 meV, respectively.     

The atomic structure of a metal-supported vitreous thin silica film

Clear as glass: The atomic structure of a metal-supported vitreous thin silica film was resolved using low-temperature scanning tunneling microscopy (STM). Based on the STM image, a model was constructed and the atomic arrangement of the thin silica glass determined (see picture). The total pair correlation function of the structural model shows good agreement with diffraction experiments performed on vitreous silica.     

A single molecule view of bistilbene photoisomerization on a surface using scanning tunneling microscopy

The advent of scanning tunneling microscopy (STM) has permitted a detailed atomic view of organic molecules adsorbed on solid surfaces. In this work, we make use of the STM to provide an unprecedented direct single-molecule perspective on the cis-trans photoisomerization of stilbene molecules within ordered monolayers physisorbed on the Ag/Ge(111)-( radical3x radical3)R30 degrees surface. The STM view of the molecular structure transformation upon irradiation provides direct evidence for the generally accepted one-bond-flip mechanism proposed for the photoisomerization process. We also find that the surface environment produces a profound effect on the reaction mechanism. The reaction is observed to proceed mainly through pairs of co-isomerizing molecules situated at domain boundaries. To explain these observations, we propose a mechanism whereby excitation migrates to the domain boundary and the reaction occurs through a biexciton reaction pathway.     

Imaging sequential dehydrogenation of methanol on Cu(110) with a scanning tunneling microscope

Adsorption of methanol and its dehydrogenation on Cu(110) were studied by using a scanning tunneling microscope (STM). Upon adsorption at 12 K, methanol preferentially forms clusters on the surface. The STM could induce dehydrogenation of methanol sequentially to methoxy and formaldehyde. This enabled us to study the binding structures of these products in a single-molecule limit. Methoxy was imaged as a pair of protrusion and depression along the [001] direction. This feature is fully consistent with the previous result that it adsorbs on the short-bridge site with the C-O axis tilted along the [001] direction. The axis was induced to flip back and forth by vibrational excitations with the STM. Two configurations were observed for formaldehyde, whose structures were proposed based on their characteristic images and motions.     

Scanning tunneling microscopy as a tool to study catalytically relevant model systems

The surface science approach to catalysis, pioneered by 2007 Nobel Laureate in chemistry Gerhard Ertl, has helped revolutionize our understanding of heterogeneous catalysis at the atomic level. In this tutorial review we show how the scanning tunnelling microscope (STM), in combination with this surface science approach, is a very important tool for the study of catalytically relevant model systems. We illustrate how the high spatial and temporal resolution of the STM can be used to obtain quantitative information on elementary processes involved in surface catalyzed reactions. Furthermore, we show that the STM is an outstanding surface science tool to bridge the materials gap and the pressure gap between surface science experiments and real catalysis. Finally, we show that we are approaching an era where the atomic-scale insight gained from fundamental STM surface science studies can be used for the rational design of new catalysts from first principles.     

Architecture of hyperbranched polymers consisting of a stearyl methacrylate sequence via a living radical copolymerization

The living radical photocopolymerization of 2-(N,N-diethyldithiocarbamyl)ethyl methacrylate (DCEM) as inimer and stearyl methacrylate (STM) as comonomer was carried out under UV irradiation. According to this method, we synthesized hyperbranched polymers (HP) consisting of a STM sequence having a long alkyl side chain. The gel permeation chromatography distribution of hyperbranched polymers had a unimodal pattern. The reactivity ratios (r(1)=0.79 and r(2)=0.81) were estimated by the Kelen-Tüd?s method (DCEM: [M](1) and STM: [M](2)). These values indicated that the two monomers showed almost equal reactivity toward propagating radical species. The radius of gyration (R(g)) and the hydrodynamic radius (R(h)) of copolymers were determined by static and dynamic light scattering (SLS and DLS), and the values of R(g)/R(h) changed from 0.79 to 1.59 with an increment of the feed amount of STM. These results indicated that the copolymer structures changed from hard spheres to loose branched molecules in solution.     

Vibrational spectroscopy of individual doping centers in a monolayer organic crystal

A scanning tunneling microscope (STM) is used to study individual Ag doping centers in a monolayer of C60 molecules supported on a thin Al2O3 film grown on the NiAl(110) surface. Vibronic states of the doping centers are observed with differential conductance (dIdV) spectroscopy. The double-barrier nature of the junction results in bipolar transport: same states participate in charge transport at both bias voltage polarities. Identification of the dIdV features corresponding to bipolar conduction enables a new mode of vibrational spectroscopy with STM.     

Ultrathin wagon-wheel-like TiOx phases on Pt(111): a combined low-energy electron diffraction and scanning tunneling microscopy investigation

Ultrathin ordered titanium oxide films on a Pt(111) surface have been prepared by reactive deposition and characterized by low-energy electron diffraction and scanning tunneling microscopy (STM). According to the postdeposition annealing condition, three different phases have been prepared which show a wagon-wheel-like (hereafter ww) morphological pattern. Two of them can be prepared as single phases (w- and w'-TiO(x)) and one (w(int)-TiO(x)) as a mixed phase which always coexists with at least one of the other two phases. All of them are formed by a Ti-O bilayer, where the Ti atoms are located at the interface with the substrate, but they show a rather distinct STM ww pattern. The experimental STM contrast has been discussed on the basis of a Moiré-like model, i.e., as deriving from a modulation of the Ti occupancy of the different substrate sites (i.e., hollow, bridge and on-top sites). The major part of the STM data can be easily interpreted on the basis of this simplified model.     

Organic bonding to silicon via a carbonyl group: new insights from atomic-scale images

The ability to covalently attach organic molecules to semiconductor surfaces in a controllable and selective manner is currently receiving much attention due to the potential for creating hybrid silicon-organic molecular-electronic devices. Here we use scanning tunneling microscopy (STM) and density functional theory calculations to study the adsorption of a simple ketone [acetone; (CH(3))(2)CO] to the silicon (001) surface. We show both bias and time-dependent STM images and their agreement with total energy DFT calculations, simulated STM images, and published spectroscopic data. We investigate the stability of the resulting adsorbate structures with respect to temperature and applied STM tip bias and current. We demonstrate the ability to convert from the kinetically favored single-dimer alpha-H cleavage adsorbate structure to thermodynamically favored bridge-bonded adsorbate structures. This can be performed for the entire surface using a thermal anneal or, for individual molecules, using the highly confined electron beam of the STM tip. We propose the use of the carbonyl functional group to tether organic molecules to silicon may lead to increased stability of the adsorbates with respect to current-voltage characterization. This has important implications for the creation of robust single-molecule devices.     

Phase transition of a single sheet of sashlike polydiacetylene atomic sash on a solid surface

The phase transition of sashlike polydiacetylene (PD) atomic sash in an extrathin (0.4 nm) vapor-deposited monolayer on a graphite (0001) surface has been observed by in-situ scanning tunneling microscopy (STM). The conformation of the atomic sash composed of a row of lying alkyl chains stitched up with a PD chain is different around the crossing points of the alkyl and PD chains in the two phases, and hence the contrast of the STM image is different in the middle of the sashes. The difference is associated with the color transition of bulk PDs.     

Gold catalyzed reduction of a hexavalent aromatic sulfonyl phthalimide to sulfur

The reduction of N-(p-fluorobenzenesulfonyl)phthalimide on polycrystalline gold and Au(111) was studied. Our key finding is the decomposition of the compound on the surface, leaving only sulfur behind. This was supported by X-ray photoelectron spectroscopy (XPS), cyclic voltammetry (CV) and scanning tunneling microscopy (STM). The modification leads to observation by STM of well-known as well as new phases for the S modified Au(111) surface.     

Direct observation of chiral metal-organic complexes assembled on a Cu100 surface

We report single-molecule level STM observations of chiral complexes generated by the assembly of achiral components at a metal surface. Following co-deposition of iron atoms and 1,3,5-tricarboxylic benzoic acid (trimesic acid, TMA) on Cu(100) in ultrahigh vaccum, TMA molecules react with the metal centers, and metal-ligand interactions stabilize R and S chiral complexes which are clearly distinguished by STM.     

Selective internal manipulation of a single molecule by scanning tunneling microscopy

We have studied the adsorption of the polyaromatic molecule 1,4"-paratriphenyldimethylacetone, which we have nicknamed Trima. The originality of this linear molecule is that it was designed and synthesized to have two functionalities. First, chemisorb itself to the surface by its two ends rather like a bridge. Second, the central part of the molecule could then be rotated by injecting electrons with the tip of the scanning tunneling microscope (STM). The length of the molecule corresponds exactly to the spacing between five dimers in a row on the Si(100)-2 x 1 surface. We found that the molecule adsorbs as expected on the clean silicon surface by using complementary STM and synchrotron radiation studies. Manipulation of individual molecules with the STM tip showed selective internal modifications that were highly voltage dependent. These manipulations were found to be compatible with an electronic excitation of the pi-pi* transition of the molecule.     

Nanoprobe fourier-transform photoabsorption spectroscopy using a supercontinuum light source

A scheme of photoabsorption spectroscopy based on scanning tunneling microscopy (STM) has been developed by using a supercontinuum light as the wideband light source of a Fourier transform interferometer for spectroscopic measurements. The performance was demonstrated for a sample of GaAs. The proof-of-concept test showed that the use of the supercontinuum light instead of halogen lamps greatly enhances the signal-to-noise ratio due to the high brilliance of the supercontinuum light emitted from a small core of the photonic crystal fiber that enables tight focusing of the spectroscopy light onto the sample beneath the STM tip.     

Large Enhancement of the Single-Molecular Conductance of a Molecular Wire through a Radical Substituent

The single-molecular conductance between two π-conjugated wires with and without a radical substituent has been compared. Specifically, methyl- and iminonitroxide-substituted 4-(biphenyl-4-yl)pyridine wires bound onto a porphyrin template were subjected to scanning tunneling microscopy (STM) apparent-height measurement at the interface between highly oriented pyrolytic graphite (HOPG) and octan-1-oic acid. Statistical analysis of the STM images revealed that the radical-substituted wire has 3.2±1.7-fold higher conductance than the methyl-substituted reference. Although density functional theory (DFT) calculation suggests that only 17 % of the SOMO is distributed on the wire moiety, the effect was significant. This study presents the potential of radical substituents to achieve high conductivity in molecular wires.