Ultrafast dynamics of myoglobin probed by time-resolved resonance Raman spectroscopy

Recent experimental work carried out in this laboratory on the ultrafast dynamics of myoglobin (Mb) is summarized with a stress on structural and vibrational energy relaxation. Studies on the structural relaxation of Mb following CO photolysis revealed that the structural change of heme itself, caused by CO photodissociation, is completed within the instrumental response time of the time-resolved resonance Raman apparatus used (approximately 2 ps). In contrast, changes in the intensity and frequency of the iron-histidine (Fe-His) stretching mode upon dissociation of the trans ligand were found to occur in the picosecond regime. The Fe-His band is absent for the CO-bound form, and its appearance upon photodissociation was not instantaneous, in contrast with that observed in the vibrational modes of heme, suggesting appreciable time evolution of the Fe displacement from the heme plane. The band position of the Fe-His stretching mode changed with a time constant of about 100 ps, indicating that tertiary structural changes of the protein occurred in a 100-ps range. Temporal changes of the anti-Stokes Raman intensity of the v4 and v7 bands demonstrated immediate generation of vibrationally excited heme upon the photodissociation and decay of the excited populations, whose time constants were 1.1 +/- 0.6 and 1.9 +/- 0.6 ps, respectively. In addition, the development of the time-resolved resonance Raman apparatus and prospects in this research field are described.     

Local structures in ionic liquids probed and characterized by microscopic thermal diffusion monitored with picosecond time-resolved Raman spectroscopy

Vibrational cooling rate of the first excited singlet (S(1)) state of trans-stilbene and bulk thermal diffusivity are measured for seven room temperature ionic liquids, C(2)mimTf(2)N, C(4)mimTf(2)N, C(4)mimPF(6), C(5)mimTf(2)N, C(6)mimTf(2)N, C(8)mimTf(2)N, and bmpyTf(2)N. Vibrational cooling rate measured with picosecond time-resolved Raman spectroscopy reflects solute-solvent and solvent-solvent energy transfer in a microscopic solvent environment. Thermal diffusivity measured with the transient grating method indicates macroscopic heat conduction capability. Vibrational cooling rate of S(1) trans-stilbene is known to have a good correlation with bulk thermal diffusivity in ordinary molecular liquids. In the seven ionic liquids studied, however, vibrational cooling rate shows no correlation with thermal diffusivity; the observed rates are similar (0.082 to 0.12 ps(-1) in the seven ionic liquids and 0.08 to 0.14 ps(-1) in molecular liquids) despite large differences in thermal diffusivity (5.4-7.5 × 10(-8) m(2) s(-1) in ionic liquids and 8.0-10 × 10(-8) m(2) s(-1) in molecular liquids). This finding is consistent with our working hypothesis that there are local structures characteristically formed in ionic liquids. Vibrational cooling rate is determined by energy transfer among solvent ions in a local structure, while macroscopic thermal diffusion is controlled by heat transfer over boundaries of local structures. By using "local" thermal diffusivity, we are able to simulate the vibrational cooling kinetics observed in ionic liquids with a model assuming thermal diffusion in continuous media. The lower limit of the size of local structure is estimated with vibrational cooling process observed with and without the excess energy. A quantitative discussion with a numerical simulation shows that the diameter of local structure is larger than 10 nm. If we combine this lower limit, 10 nm, with the upper limit, 100 nm, which is estimated from the transparency (no light scattering) of ionic liquids, an order of magnitude estimate of local structure is obtained as 10 nm < L < 100 nm, where L is the length or the diameter of the domain of local structure.     

Permeability of anti-fouling PEGylated surfaces probed by fluorescence correlation spectroscopy

The present work reports on in situ observations of the interaction of organic dye probe molecules and dye-labeled protein with different poly(ethylene glycol) (PEG) architectures (linear, dendron, and bottle brush). Fluorescence correlation spectroscopy (FCS) and single molecule event analysis were used to examine the nature and extent of probe-PEG interactions. The data support a sieve-like model in which size-exclusion principles determine the extent of probe-PEG interactions. Small probes are trapped by more dense PEG architectures and large probes interact more with less dense PEG surfaces. These results, and the tunable pore structure of the PEG dendrons employed in this work, suggest the viability of electrochemically-active materials for tunable surfaces.     

Redox-linked protein dynamics of cytochrome c probed by time-resolved surface enhanced infrared absorption spectroscopy

Time-resolved surface enhanced infrared absorption (SEIRA) spectroscopy is employed to analyse the dynamics of the protein structural changes coupled to the electron transfer process of immobilised cytochrome c (Cyt-c). Upon electrostatic binding of Cyt-c to Au electrodes coated with self-assembled monolayers (SAMs) of carboxyl-terminated thiols, cyclic voltammetric measurements demonstrate a reversible redox process with a redox potential that is similar to that of Cyt-c in solution, and a non-exponential distance-dependence of the electron transfer rate as observed previously (D. H. Murgida and P. Hildebrandt, Chem. Soc. Rev. 2008, 37, 937). On the basis of characteristic redox-state-sensitive amide I bands, the protein structural changes triggered by the electron transfer are monitored by rapid scan and step scan SEIRA spectroscopy in combination with the potential jump technique. Whereas the temporal evolution of the conjugate bands at 1693 and 1673 cm(-1) displays the same rate constants as electron transfer, the time-dependent changes of the 1660-cm(-1) band are slower by about a factor of 2. The study demonstrates that time-resolved SEIRA spectroscopy provides further information about the dynamics and mechanism of interfacial processes of redox proteins, thereby complementing the results obtained from other surface-sensitive techniques. In comparison with previous surface enhanced resonance Raman spectroscopic findings, the present results are discussed in terms of the local electric field strengths at the Au/SAM/Cyt-c interface.     

Charge transfer interactions in liquid crystalline polymers probed by fluorescence spectroscopy

Rigid-rod aromatic LC polyester with long alkyl side chains and two thermotropic LC polyesters (PET40/OBA60 and PB-10) were studied by fluorescence spectroscopy to investigate their charge transfer interactions corresponding to LC configuration and changes during phase transition.     

Alpha-synuclein structures probed by 5-fluorotryptophan fluorescence and 19F NMR spectroscopy

Alpha-synuclein, the main protein component of fibrillar deposits found in Parkinson's disease, is intrinsically disordered in vitro. Site-specific information on the protein conformation has been obtained by biosynthetic incorporation of an unnatural amino acid, 5-fluorotryptophan (5FW), into the recombinant protein. Using fluorescence and 19F NMR spectroscopy, we have characterized three proteins with 5FW at positions 4, 39, and 94. Steady-state emission spectra (maxima at 353 nm; quantum yields approximately 0.2) indicate that all three indole side chains are exposed to the aqueous medium. Virtually identical single-exponential excited-state decays (tau approximately 3.4 ns) were observed in all three cases. Single 19F NMR resonances were measured for W4, W39, and W94 at -49.0 +/- 0.1 ppm. Our analysis of the spectroscopic data suggests that the protein conformations are very similar in the regions near the three sites.     

飞秒时间分辨荧光非共线光参量放大光谱技术

时间分辨荧光光谱技术是研究激发态弛豫、能量传递以及电荷转移等光化学过程的重要且直接的工具．飞秒时间分辨荧光非共线光参量放大光谱技术是一种新发展的具有高时间分辨率、宽探测带宽、高增益的时间分辨光谱技术．本文对该技术的基本原理与工作特性、系统配置、荧光收集和会聚、数据采集模式、时问分辨光谱数据处理等进行了系统阐述．最后简单介绍了飞秒时间分辨荧光非共线光参量放大光谱技术在物理、生物和化学领域的3个典型应用,并以此展现该技术的高时间分辨率、宽光谱探测及高增益优势．     

Phase transitions and relaxation processes in ethylene-vinyl acetate copolymers probed by fluorescence spectroscopy

The steady-state fluorescence of pyrene and anthracene are used to investigate the relaxation processes of several random ethylene-co-vinyl acetate copolymers, EVA, with defined comonomer compositions (EVA-9, EVA-18, EVA-25, EVA-33 and EVA-40). The temperature of the relaxation processes are compared with those of low-density polyethylene (LDPE) and poly(vinyl acetate) (PVAc). The polymer relaxation processes are assigned to T_g=300-310 K (glass transition temperature of the PVAc); T_α=270-300 K (relaxation processes of the ethylene units present in LDPE and EVA); T_g=220-250 K (glass transition of the LDPE and of the EVA); T_γ or T_β=160-190 K (relaxation processes of interfacial defects of methylenic chains of LDPE and rotation of the acetate group of the PVAc and the EVA); and T_γ=90-130 K (relaxation processes of small sequences of methylene units of LDPE and end groups of PVAc). An Arrhenius-type function was employed as an attempt to represent the experimental data of fluorescence intensity versus temperature above the γ-relaxation temperature. As obtained with other techniques, there is not a simple relationship between the polymer relaxation processes and the vinyl acetate content that can be explained by the morphology in these copolymers.     

Laser-induced potential jump at the electrochemical interface probed by picosecond time-resolved surface-enhanced infrared absorption spectroscopy

Picosecond time-resolved surface-enhanced infrared absorption spectroscopy (SEIRAS) has been used for the first time to examine the potential jump at the electrochemical interface induced by a visible pulse irradiation. The potential dependent shift of the C-O stretching vibration of CO adsorbed on a Pt electrode was utilized to monitor the potential jump. A 6-cm(-1) red-shift was observed with a time delay of approximately 200 ps with respect to a visible pump-pulse irradiation (532 nm, 35 ps duration, 3 mJ cm(-2)). The observed red-shift is ascribed to the heating of the in-plane frustrated translational mode of CO and the negative shift of potential. These two contributions can be separated with the aid of the transient of the background reflectivity of the electrode surface. The heating of water layers near the surface is mainly responsible for the potential jump through the orientation change of water molecules. This method is promising as a tool to examine ultrafast electrode dynamics.     

Fully reversible guest exchange in tetraphosphonate cavitand complexes probed by fluorescence spectroscopy

We report here the monitoring of reversible guest inclusion in phosphonate cavitands through a large increase in luminescence intensity caused by the modulation of the exoergonicity of an electron-transfer reaction.     

Study of the isotropic and anisotropic fluorescence of two oligothiophenes by femtosecond time-resolved spectroscopy

The excited-state dynamics of two oligothiophenes, 5,5'-dicarboxyhaldehyde 2,2',5',2' '-terthiophene and 5-carboxyhaldehyde 2,2',5',2' '-terthiophene, were studied by time-resolved fluorescence spectroscopy, in the femtosecond regime. The isotropic and anisotropic parameters of their fluorescence were calculated. The angle (alpha) between the absorption and emission molecular dipoles was estimated from the initial fluorescence anisotropy. The effect of the chemical substituents, at the ends of the main chain of the molecule, on the temporal behavior of the fluorescence was investigated. Particularly, the nonsymmetric oligothiophene molecule (containing one aldehyde group) exhibits shorter excited-state isotropic decay time than the symmetric one (containing two aldehyde groups). This is due to the higher value of the emission dipole moment of the nonsymmetric oligothiophene in comparison with that of the symmetric one. Additionally, the two materials have almost the same anisotropic fluorescence parameters, and this is attributed to the same rotational motions in the excited state due to their similar molecular structures.     

Analysis of polynuclear aromatic hydrocarbon mixtures in various environments by time-resolved fluorescence spectroscopy

Time-resolved molecular fluorescence spectroscopy is presented as a sensitive and selective method for the characterization of mixtures of polynuclear aromatic hydrocarbons in the collision-free vapor phase at elevated temperature, in the condensed phase at room temperature, and at 77 K in a Shpol'skii matrix. This technique is applicable for all three conditions and the quantitative analysis for each component in mixtures has a fairly small error. Also the advantages and disadvantages are discussed for these different environments. Anthracene, pyrone and fluoranthene are used as model compounds.     

Configuration of triporphyrin ethers probed by fluorescence measurements.

The fluorescence spectra and lifetimes of triporphyrin ethers derived from hematoporphyrin, mesoporphyrin and protoporphyrin were examined, together with relative hydrophobicities estimated from reverse-phase high performance liquid chromatography (HPLC) elution times. The following data suggest a molecular arrangement with two of the three rings in a "folded configuration". The trimers display a greater fluorescence yield (phi f) than the corresponding diporphyrin ethers which contain only the two folded rings. The fluorescence lifetime data for the trimers are consistent with signals from both a folded ring pair (7-8 ns) and a free ring (14 ns). Reverse-phase HPLC studies indicate that the trimers are intermediate in hydrophobicity between the monomers and dimers. Preliminary data suggest that, for certain peripheral substitutions, the trimer configuration is superior to the dimer for photodynamic therapy.     

Redistribution of emitting state population in conjugated polymers probed by single-molecule fluorescence polarization spectroscopy

Fluctuations in the fluorescence polarization degree and direction are reported for the first time for single conjugated polymer molecules embedded in a polystyrene matrix at room temperature. The polymer molecule, a polythiophene derivative, clearly emits as a multi-chromophore ensemble showing that the energy does not funnel to any specific low-energy trap. The fluorescence instead originates from thermally populated exciton states with different relative orientations of the transition dipole moments. The fluctuations in the fluorescence polarization are explained in terms of changes in the relative contributions of the different exciton states to the signal due to conformational fluctuations of the molecule or selective exciton quenching by triplet states.     

Early aggregation in prion peptide nanostructures investigated by nonlinear and ultrafast time-resolved fluorescence spectroscopy

We report the characterization of early aggregates in the self-assembly of prion peptides using nonlinear and ultrafast time-resolved fluorescence spectroscopy. The dye-labeled peptide and dye/peptide guest-host systems were used to demonstrate the feasibility of the new approach. By measuring the two-photon absorption cross-section, small aggregates of the dye labeled peptide were characterized. Ultrafast time-resolved fluorescence anisotropy spectroscopy reveals the packing state (microenvironment) of the probes to be tightly associated with aggregates and associated with aggregation progression of the peptides. Fluorescence intensity decay shows a correlation with growth of aggregates having a high level of structured beta-sheet content. A new binding ligand Cascade Yellow shows promise for beta-sheet recognition of prion peptide nanostructures. These findings may have implications for in vivo studies of neurotoxic aggregates targeting with fluorescence markers. Also, these results may provide insight into molecular design of peptide-based nanomaterials.     

Uranyl sorption onto gibbsite studied by time-resolved laser-induced fluorescence spectroscopy (TRLFS)

Time-resolved laser-induced fluorescence spectroscopy (TRLFS) was combined with batch experiments to study the sorption of uranium(VI) onto gibbsite (gamma-Al(OH)3). The experiments were performed under ambient conditions in 0.1 M NaClO4 solution in the pH range from 5.0 to 8.5 using a total uranium concentration of 1x10(-5) M, and a solid concentration of 0.5 g/40 ml. Two uranyl surface species with fluorescence lifetimes of 330+/-115 and 5600+/-1640 ns, respectively, were identified. The first species was dominating the more acid pH region whereas the second one became gradually more prominent towards higher pH values. The fluorescence spectra of both adsorbed uranyl(VI) surface species were described with six characteristic fluorescence emission bands situated at 479.5+/-1.1, 497.4+/-0.8, 518.7+/-1.0, 541.6+/-0.7, 563.9+/-1.2, and 585.8+/-2.1 nm. The surface species with the short-lived fluorescence lifetime of 330 ns is attributed to a bidentate mononuclear inner-sphere surface complex in which the uranyl(VI) is bound to two reactive OH- groups at the broken edge linked to one Al. The second surface species with the significant longer fluorescence lifetime of 5600 ns was attributed to small sorbed clusters of polynuclear uranyl(VI) surface species. The longer fluorescence lifetime of the long-lived uranyl surface species at pH 8.5 is explained with the growing average size of the adsorbed polynuclear uranyl surface species.     

The role of electronic coupling in linear porphyrin arrays probed by single-molecule fluorescence spectroscopy

Single-molecule photophysical properties of two families of linear porphyrin arrays have been investigated by single-molecule fluorescence detection techniques. Butadiyne-linked arrays (Z(N)B) with extensive π-conjugation perform as photostable one-quantum systems. This demonstration has been suggested by the long-lasting initial emissive state and subsequent discrete one-step photobleaching in the fluorescence intensity trajectories (FITs). As in the behavior of a one-quantum system, Z(N)B shows anti-bunching data in the coincidence measurements. On the other hand, in directly-linked arrays (Z(N)) with strong dipole coupling, each porphyrin moiety keeps individual character in photobleaching dynamics. The stepwise photobleachings in the FITs account for this explanation. Most of the FITs of Z(N) do not carry momentary cessation of fluorescence emission, which has been explained by the strongly bound electron-hole pair of Frenkel exciton that suppresses charge transfer between the molecule and surrounding polymers. These results give insight into the influences of interchromophorinc interactions between porphyrin moieties in the multiporphyrin arrays on their fluorescence dynamics at the single-molecule level.     

Site-selective time-resolved laser fluorescence spectroscopy of Eu3+ in calcite

Three samples of calcite homogeneously doped with Eu(3+) were synthesized in a mixed-flow reactor. By means of selective excitation of the 5D0-->7F0 transition at low temperatures (T<20 K), three different Eu(3+) species (species A, B, and C, respectively) could be discriminated. For each one, the emission spectrum and lifetime were obtained after selective excitation of the single species. On the basis of these data, species C could be identified as Eu(3+) incorporated into the calcite lattice on the (nearly) octahedral Ca(2+) site. Species B was also identified as Eu(3+) incorporated into the calcite lattice, but the ligand field shows a much weaker symmetry. Species A, however, is not incorporated into the crystal's bulk, having 1-2 H(2)O ligands left in its first coordination sphere and showing very little symmetry, and is considered as Eu(3+) adsorbed onto the calcite surface. The emission spectra of species C for Eu:calcite grown in the presence of Na(+) were found to differ from those of Eu:calcite synthesized in the presence of K(+). The latter revealed a strong distortion in site symmetry, which was not observed in the samples grown in Na(+) solutions. This finding provides spectroscopic evidence in favor of an incorporation mechanism based on the charge-balanced coupled substitution of Na(+)+Eu(3+)<-->2Ca(2+).     

Europium speciation by time-resolved laser-induced fluorescence

Time-resolved laser-induced fluorescence has been used to investigate Eu complexes formed with a few main ligands encountered in natural waters: hydroxide, carbonate and humic substances. By varying pH and concentrations of ligands at fixed europium concentration and ionic strength, it was possible, together with free europium Eu³⁺, to identify spectrally and temporally carbonate complexes, namely Eu(CO₃)⁺, Eu(CO₃)₂⁻ and Eu(CO₃)₃³⁻ and humate complexes EuHA. For hydroxide complexes, no differences were found in terms of fluorescence spectra and lifetimes. A spectral interpretation is described by using deconvolution for all systems.