Peptide sequence scrambling through cyclization of b5 ions

The CID mass spectra of the MH(+) ions and the b(5) ions derived therefrom have been determined for the hexapeptides YAAAAA, AYAAAA, AAYAAA, AAAYAA, and AAAAYA. The CID mass spectra for the b(5) ions derived from the five isomers are essentially identical and show abundant ion signals for nonsequence b ions. This result is consistent with cyclization of the b(5) ions to a cyclic pentapeptide before fragmentation; this cyclic peptide can open at various positions, leading to losses of amino acid residues that are not characteristic of the original amino acid sequence. These nonsequence b ions are also observed in the fragmentation of the MH(+) ions and increase substantially in importance with increasing collision energy. A comparison of the fragmentation of AAAYAA and Ac-AAAYAA indicates that N-acetylation eliminates the cyclization of b(5) ions and, thus, eliminates the nonsequence ions in the CID mass spectra of both b(5) and MH(+) ions.     

Effect of the his residue on the cyclization of b ions

The MSⁿ spectra of the [M + H]⁺ and b ₅ peaks derived from the peptides HAAAAA, AHAAAA, AAHAAA, AAAHAA, and AAAAHA have been measured, as have the spectra of the b ₄ ions derived from the first four peptides. The MS² spectra of the [M + H]⁺ ions show a substantial series of b_n ions with enhanced cleavage at the amide bond C-terminal to His and substantial cleavage at the amide bond N-terminal to His (when there are at least two residues N-terminal to the His residue). There is compelling experimental and theoretical evidence for formation of nondirect sequence ions via cyclization/reopening chemistry in the CID spectra of the b tons when the His residue is near the C-terminus. The experimental evidence is less clear for ions when the His residue is near the N-terminus, although this may be due to the use of multiple alanine residues in the peptide making identifying scrambled peaks more difficult. The product ion mass spectra of the b ₄ and b ₅ ions from these isomeric peptides with cyclically permuted amino acid sequences are similar, but also show clear differences. This indicates less active cyclization/reopening followed by fragmentation of common structures for b _n ions containing His than for sequences of solely aliphatic residues. Despite more energetically favorable cyclization barriers for the b ₅ structures, the b ₄ ions experimental data show more clear evidence of cyclization and sequence scrambling before fragmentation. For both b ₄ and b ₅ the energetically most favored structure is a macrocyclic isomer protonated at the His side chain.     

Effect of polymerization catalysts on the microstructure of P(LLA-co-εCL)

The copolymerization of L ,L -lactide and ε-caprolactone was carried out using antimony trioxide and stannous octoate as catalysts. The effect of polymerization catalysts on the physical and the chemical microstructures of this copolymer was investigated by ¹³C NMR and DSC analysis. Antimony trioxide causes more random sequence distribution within the copolymer chain due to its higher transesterification characteristic than stannous octoate. The copolymer samples made with the antimony trioxide catalyst seem to have more amorphous phase structure, than those prepared using stannous octoate which are semicrystalline for the entire compositional range due to blocky copolymer sequences. © 1994 John Wiley & Sons, Inc.     

5-雄烯-3β, 7α, 17β-三醇和5-雄烯-3β, 7β, 17β-三醇的合成

以5-雄烯二醇为原料,用微生物转化的方法合成了两个重要的神经甾体5-雄烯-3β, 7α, 17β-三醇和5-雄烯-3β, 7β, 17β-三醇。所用菌种总枝毛霉为我们自己筛选,并首次应用于5-雄烯-3β, 7α, 17β-三醇和5-雄烯-3β, 7β, 17β-三醇的合成中。     

Complexation of decamethylcucurbit[5]uril with alkali metal ions

Four coordination compounds, namely [Na(H₂O)(H₂O)₂⊂C₄₀H₅₀N₂₀O₁₀](C₆H₆O₂)₂Cl·8H₂O (1), [K₂(H₂O)₂(H₂O)⊂C₄₀H₅₀N₂₀O₁₀](C₆H₆O₂)₂Cl₂·7H₂O (2), [Rb₂(H₂O)₂(H₂O)⊂C₄₀H₅₀N₂₀O₁₀](C₆H₆O₂)₂Cl₂·7H₂O (3) and [Cs(H₂O)₂(H₂O⊂C₄₀H₅₀N₂₀O₁₀)](C₆H₆O₂)₂Cl·6H₂O (4), were obtained by the reactions of the corresponding alkali metal salts with decamethylcucurbit[5]uril (Me₁₀Q[5]) in the presence of hydroquinone, and their structures were determined by single-crystal X-ray diffraction. The results revealed that in compounds 1 and 4 each Me₁₀Q[5] ligand coordinates one Na⁺ or Cs⁺ ion to form a molecular bowl structure, while in compounds 2 and 3 each Me₁₀Q[5] ligand coordinates two K⁺ or Rb⁺ ions to form a closed molecular capsule structure, and adjacent molecular capsules bridge each other through water molecules to form 1D coordination polymers. In addition, we found that the coordination distances for the metal ions and the height of the metal ions out-of-portal-plane for the four compounds are in the same order, 1 < 2 < 3 < 4, which is attributed to the fact that the radius of alkali cations is in the order Na⁺ < K⁺ < Rb⁺ < Cs⁺. Although each portal of Q[6] binds with two alkali cations (not including Cs⁺), the Q[6]-based alkali cations complexes display similar structural trends.     

铜离子的引入对甲烷无氧芳构化催化剂Mo/CuH-ZSM-5中Mo物种化学状态的影响

对比考察了Mo/CuH-ZSM-5和Mo/H-ZSM-5催化剂的甲烷无氧芳构化性能,并用XRD,XPS,ESR等多种测试手段对反应前后催化剂上的Mo物种及铜助剂的价态变化进行了详细研究,发现Cu(Ⅱ)部分取代H-ZSM-5交换位上的H⁺后,抑制了活性组分MoO₃的还原,而Cu物种自身被还原,进而将这种价态变化与催化剂的活性进行了关联.     

Microwave syntheses of poly(ε‐caprolactam‐co‐ε‐caprolactone)

Microwave irradiation was applied to synthesize poly(ε‐caprolactam‐co‐ε‐caprolactone) directly from the anionic catalyzed ring opening of two cyclic monomers, ε‐caprolactam and ε‐caprolactone using a variable frequency microwave furnace, programmed to a set temperature and controlled by a pulsed power on–off system. Dielectric properties of ε‐caprolactam, ε‐caprolactone, and their mixture were measured in the microwave range from 0.4 to 3 GHz, showing that both ε‐caprolactam and ε‐caprolactone exhibited effective absorption of microwave energy to induce a fast chemical reaction. The microwave induced anionic copolymerization of ε‐caprolactam and ε‐caprolactone generated copoly(amide‐ester)s in yields as high as 70%. Conventional thermal and microwave copolymerization studies were also conducted for comparison with the microwave results. These studies demonstrated that an effective and efficient microwave method to copolymerize ε‐caprolactam with ε‐caprolactone in higher yield, higher amide content, and higher T_g 's, relative to the thermal process, has been developed. © 2000 John Wiley & Sons, Inc. J Polym Sci A: Polym Chem 38: 1379–1390, 2000     

Influences of the Hydrophobicity of the Heme－binding Pocket on the Properties and Functions of Cytochrome b5 Mutants

The mutation sites of the four mutants F35Y, P40V, V45E and V45Y of cytochrome b5 are located at the edge of the heme-binding pocket. The solvent accessible areas of the “pocket inte-rior“ of the four mutants and the wild-type cytochrome b5 have been calculated based on their crystal structures at high resolu-tion. The change in the hydrophobicity of the heme-binding pocket resulting from the mutation can be quantitatively de-scribed using the difference of the solvent accessible area of the “pocket interior“ of each mutant from that of the wild-type cy-tochrome b5. The influences of the hydrophobicity of the heme-binding pocket on the protein stability and redox potential are discussed.     

Synthesis and Characterization of β‐Diketiminate Aluminum Compounds and Their Use in the Ring‐Opening Polymerization of ε‐Caprolactone

Four aluminum alkyl compounds, [CH{(CH₃)CN‐2,4,6‐MeC₆H₂}₂AlMe₂] ( 1 ), [CH{(CH₃)CN‐2,4,6‐MeC₆H₂}₂AlEt₂] ( 2 ), [CH{(CH₃)CN‐2‐iPrC₆H₄}₂AlMe₂] ( 3 ), and [CH{(CH₃)CN‐2‐iPrC₆H₄}₂AlEt₂] ( 4 ), bearing β‐diketiminate ligands [CH{(Me)CN‐2,4,6‐MeC₆H₂}]₂ (L¹H) and [CH{(Me)CN‐2‐ⁱPrC₆H₄}]₂ (L²H) were obtained from the reactions of trimethylaluminum, triethylaluminum with the corresponding β‐diketiminate, respectively. All compounds were characterized by ¹H NMR and ¹³C NMR spectroscopy, single‐crystal X‐ray structural analysis, and elemental analysis. Compounds 1 – 4 were found to catalyze the ring‐opening polymerization (ROP) of ε‐caprolactone (ε‐CL) with good activity.     

Synthesis,characterization, and degradation of poly(ethylene‐b‐ε‐caprolactone) diblock copolymer

Poly(ethylene‐b‐ε‐caprolactone) (PE‐b‐PCL) diblock copolymers were synthesized by ring‐opening polymerization (ROP) of ε‐caprolactone (CL) with α‐hydroxyl‐ω‐methyl polyethylene (PE‐OH) as a macroinitiator and ammonium decamolybdate (NH₄)₈[Mo₁₀O₃₄] as a catalyst. Polymerization was conducted in bulk (130–150°C) with high yield (87–97%). Block copolymers with different compositions were obtained and characterized by ¹H and ¹³C NMR, MALDI‐TOF, SAXS, and DSC. End‐group analysis by NMR and MALDI‐TOF indicates the formation of α‐hydroxyl‐ω‐methyl PE‐b‐PCL. The PE‐b‐PCL degradation was studied using thermogravimetric analysis (TGA) and alkaline hydrolysis. The PCL block was hydrolyzed by NaOH (4M), without any effect on the PE segment. Copyright © 2009 John Wiley & Sons, Ltd.     

Two‐Step Backbiting Reaction in the Ring‐Opening Polymerization of γ‐Acryloyloxy‐ε‐caprolactone Initiated with Aluminium Isopropoxide

γ‐Acryloyloxyethyl‐γ‐butyrolactone is formed as a byproduct when the polymerization of γ‐acryloyloxy‐ε‐caprolactone is initiated with aluminium isopropoxide in toluene. The extent of this side reaction decreases with decreasing temperature and is dependent on whether the reaction is stopped as soon as monomer conversion is complete or not. A two‐step backbiting mechanism is proposed for this intramolecular transesterification reaction.     

Cε3-Cε4蛋白寡核苷酸适配子结合位点的预测与筛选

采用NPDock程序对Cε3-Cε4蛋白与其核酸适配子A1的结合位点进行了预测与筛选, 筛选出A1与Cε3-Cε4蛋白结合的关键位点. 同时, 根据蛋白与DNA片段复合物结合界面中氨基酸残基和碱基统计分析发现, 结合界面氨基酸富集碱基G能力最强, 富集碱基T和C能力次之. 本文建立了以NPDock程序虚拟对接为基础的高效适配子优化方法, 为相关研究提供了实验参考.     

Effect of sequence on peptide geometry in 5-tert-butylprolyl type VI beta-turn mimics

The influence of sequence on turn geometry was examined by incorporating (2S,5R)-5-tert-butylproline (5-(t)BuPro) into a series of dipeptides and tetrapeptides. (2S,5R)-5-tert-Butylproline and proline were respectively introduced at the C-terminal residue of N-acetyl dipeptide N'-methylamides 1 and 2. The conformational analysis of these analogues was performed using NMR and CD spectroscopy as well as X-ray diffraction to examine the factors that control the prolyl amide (in this text, the term "prolyl amide" refers to the tertiary amide composed of the pyrrolidine nitrogen of the prolyl residue and the carbonyl of the N-terminal residue) equilibrium and stabilize type VI beta-turn conformation. The high cis-isomer population with aromatic residues N-terminal to proline was shown to result from a stacking interaction between the partial positive charged prolyl amide nitrogen and the aromatic pi-system as seen in the crystal structure of 1c. The effect of sequence on the prolyl amide equilibrium of 5-(t)BuPro-tetrapeptides (Ac-Xaa-Yaa-5-(t)BuPro-Zaa-XMe, 13 and 14) was studied by varying the amino acids at the Xaa, Yaa, and Zaa positions. High (>80%) cis-isomer populations were obtained with alkyl groups at the Xaa position, an aromatic residue at the Yaa position, and either an alanine or a lysine residue at the Zaa position of the 5-(t)BuPro-tetrapeptide methyl esters in water. Tetrapeptides Ac-Ala-Phe-5-(t)BuPro-Zaa-OMe (Zaa = Ala, Lys), 14d and 14f, with high cis-isomer content adopted type VIa beta-turn conformations as shown by their NMR and CD spectra. Although a pattern of amide proton temperature coefficient values indicative of a hairpin geometry was observed in peptides 14d and 14f, the value magnitudes did not indicate strong hydrogen bonding in water.     

Non‐covalent dimers of the lysine containing protonated peptide ions in gaseous state: electrospray ionization mass spectrometric study

Study of the non‐covalent molecular complexes in gas phase by electrospray ionization mass spectrometry (ESI‐MS) represents a promising strategy to probe the intrinsic nature of these complexes. ESI‐MS investigation of a series of synthetic octapeptides containing six alanine and two lysine residues differing only by their positions showed the formation of non‐covalent dimers, which were preserved in the gas phase. Unlike the monomers, the dimers were found to show only singly protonated state. The decrease in the solvent polarity from water to alcohol showed enhanced propensity of formation of the dimer indicating that the electrostatic interaction plays a crucial role to stabilize the dimer. Selective functionalization studies showed that ε‐NH₂ of lysine and C‐terminal amide (? CONH₂) facilitate the dimerization through intermolecular hydrogen bonding network. Copyright © 2010 John Wiley & Sons, Ltd.     

Effect of electron radiation and triallyl isocyanurate on the average molecular weight and crosslinking of poly(ε‐caprolactone)

Investigation of the effect of electron radiation on the flow rate and average molecular weight of poly(ε‐caprolactone) (PCL) as well as on formation of the gel fraction of this polymer being irradiated in the presence of triallyl isocyanurate (TAIC) was the aim of the present paper. It was found that PCL macromolecules upon the electron radiation underwent both degradation and linking, because of which the polymer molecular weight increased. The processes associated with elongation of the polymer chains prevailed over the degradation ones. It was also found that PCL irradiated in the presence of TAIC underwent crosslinking resulting in formation of a significant amount of the gel fraction. The largest amount of this fraction was created upon the radiation with the dose of 60 kGy, which was confirmed by the results of determination of the swelling index. Changes in properties of PCL, occurring because of the electron radiation, are important for controlling viscosity of polymeric materials during processing of these materials. Copyright © 2015 John Wiley & Sons, Ltd.     

New method to study the effects of peptide sequence on the dissociation energetics of peptide ions

A new method has been developed to study the dissociation patterns of singly protonated peptides by using a quadrupole ion trap mass spectrometer. The new approach involves using boundary-activated dissociation to characterize the ease of dissociation of peptide ions. Insight can be gained into the effect of specific peptide sequences on the dissociation energetics of protonated peptides. Increased knowledge of the effects of specific sequences on the dissociation patterns of peptide ions should improve the ability to interpret complex spectra from tandem mass spectrometry (MS/MS) experiments. This method has confirmed the previously observed increase in the energy needed for the dissociation of peptide ions containing basic residues. In addition, this technique has revealed the effect of the location of proline residues on the dissociation energetics of peptides with this amino acid.     

Effects of acidic peptide size and sequence on trivalent praseodymium adduction and electron transfer dissociation mass spectrometry

Using the lanthanide ion praseodymium, Pr(III), metallated ion formation and electron transfer dissociation (ETD) were studied for 25 biological and model acidic peptides. For chain lengths of seven or more residues, even highly acidic peptides that can be difficult to protonate by electrospray ionization will metallate and undergo abundant ETD fragmentation. Peptides composed of predominantly acidic residues form only the deprotonated ion, [M + Pr ‐ H]²⁺; this ion yields near complete ETD sequence coverage for larger peptides. Peptides with a mixture of acidic and neutral residues generate [M + Pr]³⁺, which cleaves between every residue for many peptides. Acidic peptides that contain at least one residue with a basic side chain also produce the protonated ion, [M + Pr + H]⁴⁺; this ion undergoes the most extensive sequence coverage by ETD. Primarily metallated and non‐metallated c‐ and z‐ions form for all peptides investigated. Metal adducted product ions are only present when at least half of the peptide sequence can be incorporated into the ion; this suggests that the metal ion simultaneously attaches to more than one acidic site. The only site consistently lacking dissociation is at the N‐terminal side of a proline residue. Increasing peptide chain length generates more backbone cleavage for metal‐peptide complexes with the same charge state. For acidic peptides with the same length, increasing the precursor ion charge state from 2+ to 3+ also leads to more cleavage. The results of this study indicate that highly acidic peptides can be sequenced by ETD of complexes formed with Pr(III). Copyright © 2017 John Wiley & Sons, Ltd.     

Hydrolytic degradation of poly(ε‐caprolactone) with different end groups and poly(ε‐caprolactone‐co‐γ‐butyrolactone): characterization and kinetics of hydrocortisone delivery

Asymmetric telechelic α‐hydroxyl‐ω‐(carboxylic acid)‐poly(ε‐caprolactone) (HA‐PCL), α‐hydroxyl‐ω‐(benzylic ester)‐poly(ε‐caprolactone) (HBz‐PCL), and an asymmetric telechelic copolymer α‐hydroxyl‐ω‐(carboxylic acid)‐poly(ε‐caprolactone‐co‐γ‐butyrolactone) (HA‐PCB) were synthesized by ring‐opening polymerization of ε‐caprolactone (CL). CL and CL/γ‐butyrolactone mixture were used to obtain homopolymers and copolymer respectively at 150°C and 2 hr using ammonium decamolybdate (NH₄) [Mo₁₀O₃₄] (Dec) as a catalyst. Water (HA‐PCL and HA‐PCB) or benzyl alcohol (HBz‐PCL) were used as initiators. The three polylactones reached initial molecular weights between 2000 and 3000 Da measured by proton nuclear magnetic resonance (¹H‐NMR). Compression‐molded polylactone caplets were allowed to degrade in 0.5 M aqueous p‐toluenesulfonic acid at 37°C and monitored up to 60 days for weight loss behavior. Data showed that the copolymer degraded faster than the PCL homopolymers, and that there was no difference in the weight loss behavior between HA‐PCL and HBz‐PCL. Caplets of the three polylactones containing 1% (w/w) hydrocortisone were placed in two different buffer systems, pH 5.0 with citrate buffer and pH 7.4 with phosphate buffer at 37°C, and monitored up to 50 days for their release behavior. The release profiles of hydrocortisone presented two stages. The introduction of a second monomer in the polymer chain significantly increased the release rate, the degradation rate for HA‐PCB being faster than those for HBz‐PCL and HA‐PCL. At the pH studied, only slight differences on the liberation profiles were observed. SEM micrographs indicate that hydrolytic degradation occurred mainly by a surface erosion mechanism. Copyright © 2009 John Wiley & Sons, Ltd.     

A pillar[5]arene-based side-chain pseudorotaxanes and polypseudorotaxanes as novel fluorescent sensors for the selective detection of halogen ions

A pseudorotaxane and its polypseudorotaxanes formed between pillar[5]arene moieties and noctylpyrazinium cations as novel fluorescent sensors for the selective detection of halogen ions were reported.A collapse of these pillar[5]arene-based pseudorotaxanes and polypseudorotaxanes occurred upon the addition of Cl,Br,and I（tetrabutylammonium salts）,respectively,leading to their fluorescence recovery.The fluorescence enhancement of the pseudorotaxane and the polypseudorotaxanes increases in the order of I