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1.
The energies of the conformations of the threonine dipeptide are determined by adding the energetic effects of the methyl group to the results for the serine dipeptide. The results are then checked by explicit ab initio molecular orbital computations on the important low-energy conformations. Analysis of these results yields the non-bonded repulsions, the torsion barriers and the hydrogen bonds.

There are many similarities between the serine results and those for threonine. In particular, the computations show that the +60° value of χ 1 is again important in the helix bridge region of the Ramachandran map. On the other hand, there is a pronounced difference between serine and threonine in that the methyl group of the latter causes the form with χ1 = 180° to be a high-energy conformation over all areas of the Ramachandran map except the left sheet region. These and other points are in accord with the experimental data for five proteins.  相似文献   


2.
A mild new procedure for preparing protected peptide thioesters, based on Ca2+-assisted thiolysis of peptide–Kaiser oxime resin (KOR) linkage, is described. Ac-Ile-Ser(Bzl)-Asp(OcHx)-SR (Ac: acetyl; Bzl: benzyl; cHx: cyclohexyl), model peptide, was readily released from the resin by incubating the peptide–KOR at 60 °C in mixtures of DMF with n-butanethiol [R = (CH2)3CH3] or ethyl 3-mercaptopropionate [R = (CH2)2COOCH2CH3] containing Ca(CH3COO)2. After serine and aspartic acid side-chain deprotection under acid conditions, Ac-Ile-Ser-Asp-S(CH2)2COOCH2CH3 was successfully obtained with good quality and high yield. This type of C-terminal modified peptide may act as an excellent acyl donor in peptide segment condensation by the thioester method, native chemical ligation and enzymatic methods.  相似文献   

3.
Carnosine (β-alanyl-L-histidine) is a biologically active molecule involved in muscular metabolism. It crystallises in the C; space group with a = 24.725 Å b = 5,427 Å c = 8,004 Å β = 100,2° (Z = 4)

In the crystal, acid and basic groups are engaged in hydrogen bonds whose strength is evaluated through IR frequencies. Molecular conformation in the solid state is defined by τ1 = /t-177° τ2 = −38° φ = −96° ψ = +131° χ1 = 181° χ21 = 62°

NMR study of carnosine in aqueous solution indicates that rotation about CH2-CH2 is free and that the other angles take the following values: Ø −150° or −90° and X1 = 165° or 315°. Infrared and Raman spectra suggest that τ2 undergoes small changes when going from crystal to solution while ψ is close to +150°.  相似文献   


4.
The crystal and molecular structure of the N-(4-chloro)benzoyl-N′-(4-tolyl)thiourea (C15H13N2OSCl, Mr=304.79) is determined by X-ray diffraction. The crystal structure is monoclinic, space group: P21/n, a=16.097(6), b=4.5989(2), c=19.388(7) Å and β=89.299(6)° V=1434.7(9)Å3, Z=4. FTIR and NMR spectra have been characterized. The interactions of intramolecular and intermolecular hydrogen bonds have been discussed. Density functional theory (DFT) (B3LYP) methods have been used to determine the structure and energies of stable conformers. Minimum energy conformations are calculated as a function of the torsion angle θ (C13–N1–C14–N2) varied every 30°. The optimized geometry corresponding to crystal structure is the most stable conformation. This has partly been attributed to intramolecular hydrogen bonds. With the basis sets of the 6-311G* quality, the DFT calculated bond parameters and harmonic vibrations are predicted in a very good agreement with experimental data.  相似文献   

5.
Three interpenetrated polymeric networks, {[Co(bpp)(OH-BDC)] · H2O}n (1) [Ni(bpp)1.5(H2O)(OH-BDC)]n (2) and {[Cd(bpp)(H2O)(OH-BDC)] · 2H2O}n (3), have been prepared by hydrothermal reactions of 1,3-bis(4-pyridyl)propane (bpp), 5-hydroxyisophthalic acid (OH-H2BDC), with Co(NO3)2 · 6H2O, Ni(NO3)2 · 6H2O and Cd(NO3)2 · 4H2O, respectively. Single-crystal X-ray diffraction analyses reveal that the three compounds all exhibit interpenetrated but entirely different structures. Compound 1 is a fourfold interpenetrated adamantanoid structure with water molecules as space fillers, in which bpp adopts a TG conformation (T = trans, G = gauche). Compound 2 is an interdigitated structure from the interpenetrated long arms of one-dimensional molecular ladders, while bpp in 2 adopts both TT and TG conformations. Compound 3 is a twofold interpenetrated three-dimensional network from a one-dimensional metal-carboxylate chain bridged by TG conformational bpp. The hydrogen bonding interactions in 1–3 further stabilize the whole structural frameworks and play critical roles in their constructions.  相似文献   

6.
We have previously determined an analytical ab initio six-dimensional potential energy surface for the HCl dimer, and in the present paper we use this potential, with the HCl bond lengths held fixed, in a full (four-dimensional) close-coupling calculation to determine the energies of the lowest 24 vibrational states. These vibrational states involve the intermolecular stretch ν4, the trans-bend tunneling vibration ν5, and the torsion ν6. The highest of the 24 levels is the (ν4ν5ν6)=(111) state, for which we calculate an energy of 200 cm−1 above the (000) state. As well as determining tunneling energies up to 5ν5=183 cm−1, we determine ν4=49 cm−1, 2ν4=93 cm−1, 3ν4=134 cm−1, 4ν4=172 cm−1, ν6=137 cm−1 and ν46=178 cm−1, together with tunneling energies in all these states. Making allowance for the HCl stretching zero-point energy we determine the dissociation energy D0 as 390 cm−1 on this analytical surface. We determine that below 300 cm−1 there are 72 vibrational (J=K=0) states, and below dissociation there are 162 vibrational (J=K=0) states, for this potential surface.  相似文献   

7.
Medium-resolution spectra of the N2 b1Πu-X1Σg+ band system were recorded by 1 + 1 multiphoton ionization. In the spectra we found different linewidths for transitions to different vibrational levels in the b 1Πu state: Δν0 = 0.50 ± 0.05 cm−1, Δν1 = 0.28 ± 0.02 cm−1, Δν2 = 0.65 ± 0.06 cm−1, Δν3 = 3.2 ± 0.5 cm−1, Δν4 = 0.60 ± 0.07 cm−1, and Δν5 = 0.28 ± 0.02 cm−1. From these linewidths, predissociation lifetimes τν were obtained: τ0 = 16 ± 3 ps, τ1 > 150 ps, τ2 = 10 ± 2 ps, τ3 = 1.6 ± 0.3 ps, τ4 = 9 ± 2 ps, and τ5 > 150 ps. Band origins and rotational constants for the b 1Πuν = 0 and 1 levels were determined for the 14N2 and 14N15N molecules.  相似文献   

8.
The effect of the chirality of the amino acid at position i + 2 on a β-turn was investigated by a grid scan ab initio calculation on the Ac- -Pro- -Ala-NH2 and Ac- -Pro- -Ala-NH2 blocked dipeptides. Th6-31G basis set was used to estimate the effect of the alanyl side chain on the conformation of the peptide backbone in a blocked dipeptide as a simple, but complete model for a reverse turn. This study provides a quantum mechanical evaluation of the ability of the NH at the i + 3 residue to form the H-bond that closes the 10 membered ring which stabilizes the turn. The lowest energy of all 64 probed conformations of the -Ala containing peptide corresponded to a good type II β-turn with a hydrogen bond distance between the acetyl oxygen and the amide terminal hydrogen of 2.21 Å. A comparison with the nonblocked dipeptide ab initio study indicates that the presence of the end blocks enhances the propensity of the -Ala-containing dipeptide for a type II β-turn, but does not seem to enhance the propensity of the -Ala-containing dipeptide for a type I β-turn. The energies and geometric parameters for the lowest four optimized conformations identified by the grid scan search for each molecule have been calculated.  相似文献   

9.
Two nickel (imidazole) complexes, Ni(im)6Cl2·4H2O (1) and Ni(im)6(NO3)2 (2) (im=imidazole) have been synthesized and characterized by elemental analysis, IR, UV, TG and single crystal X-ray diffraction. 1 crystallizes in the triclinic space group P-1 with a=8.800(6) Å, b=9.081(6) Å, c=10.565(7) Å, =75.058(9)°, β=83.143(8)°, γ=61.722(8)°, V=718.3(8) Å3, Z=1 and R1 (wR2)=0.0469 (0.1497). 2 crystallizes in the trigonal space group R-3 with a=12.370(6) Å, b=12.370(6) Å, c=14.782(14) Å, =90.00°, β=90.00°, γ=120.00°, V=1959(2) Å3, Z=3 and R1 (wR2)=0.0358 (0.0955). 1 and 2 exhibit different supramolecular network due to their different counter anions and different hydrogen bonding connection. In compound 1, [Ni(im)6]2+ cation and counter anions Cl alternatively array in an ABAB fashion via N–HCl hydrogen bonding. In compound 2, the plane of each NO32− is almost parallel and each NO32− connect three different [Ni(im)6]2+ cations via N–HO hydrogen bonding.  相似文献   

10.
提出了一种新方案,以有效洞察液态中共存构象异构体对聚氧乙烯(PEO)实际振动光谱的贡献。通过定义6种-(CH_2CH_2O)-重复单元构象,构建并优化得到4种全同EO构象组合[(TGT)_(10)、(TTT)_(10)、(TTG)_(10)和(GTG)_(10)]和3种其它EO构象组合的构象异构体结构,并在PCM溶剂模型和B3LYP/6-31G(d)理论水平下,对结构进行了优化和振动频率计算。通过振动模式分析,提出描述PEO400各构象异构体的不同CH_2剪切振动和CH_2扭转振动模式的统一标准,确定了4种CH_2CH_2-O-CH_2CH_2链段构象和相关振动模式,以及它们与振动频率大小的关系,并应用于实际拉曼光谱的指认。  相似文献   

11.
The X-ray crystallographic studies are reported for the water-soluble trivalent lanthanide complexes of the macrocyclic p-sulfonatothiacalix[4]arene [Gd(H2O)6((CH3)2SO)(p-sulfonatothiacalix[4]arene)]·H3O+·5H2O (1) and Na[Nd(H2O)6((CH3)2SO)(p-sulfonatothiacalix[4]arene)]·3H2O (2). The complexes are isostructural and belong to monoclinic system, C2/m space group. The Ln3+ metal ion is coordinated by the thiacalixarene ligand via the sulfonato group, and also ligated by an oxygen atom of a dimethyl sulfoxide (DMSO) molecule that occupies the cavity of the thiacalixarene and six aqua ligands. The thiacalixarenes are linked by the coordinated water molecules through hydrogen bonding to form a 2D polymer. The p-sulfonatothiacalixarenes maintain the clay-like bi-layer structure in the coordination network.  相似文献   

12.
The microwave spectrum of ethyl fluoroformate displays strong a-type R branch transitions from two rotameric forms. One species (extended form) has rotational constants A0 = 9191.3(9) MHz, B0 = 2112.61(1) MHz, C0 = 1756.73(1) MHz which are consistent with a syn-anti (τ1(OCOC) = 0°, r2(cocc) = 180°) planar heavy atom structure. The second species (compact form) has rotational constants A0 = 7760(3) MHz, B0 = 2388.38(4) MHz, C0 = 2102.47(3) MHz which are consistent with a syn-gauche1(ococ) = 0°, τ2(cocc) ˜ 90°) structure. The two conformational forms have approximately equal energy (0 ± 40 cm−1). Four vibrational satellites of the extended species have been analyzed yielding a torsional frequency around the O-ethyl bond of 70(10) cm−1. Three vibrational satellites attributed to the O-ethyl torsion of the compact species have been analyzed yielding a vibrational frequency of 90(10) cm−1. Approximate Fourier coefficients of a three term potential function for internal rotation about the O-ethyl bond have been determined. Vibrational satellites attributed to the first excited states of the O-ester torsion have been analyzed for both conformers. The torsional vibrational frequency around the O-ester bond is 110(15) cm−1 for the extended conformers and 120(20) cm−1 for the compact.  相似文献   

13.
The trans and cis isomers of Co(NCS)2(NH3)4+ and Co(NCS)2(en)2+ were prepared and characterized. Single-crystal X-ray diffraction showed that the first named was the trans isomer and established that the thiocyanates are N bonded. Photoredox quantum yields of the Co2+ ion on room temperature irradiation at 360 nm were found to be 0.065±0.001, 0.0082±0.001, 0.0088±0.0007 and 0.0040±0.0010 respectively. Other products measured were the thiocyanate ion and ammonia, but the relationships of these yields to Co2+ were not as expected for simple oxidation of thiocyanate and reduction of Co(III). On irradation in the presence of thiocyanate, a significant increase in yields occurs and this can be modelled in terms of scavenging of the thiocyanate radical from an initial caged radical pair giving picosecond estimates for the lifetime of this species of the order of tens of picoseconds, or in terms of photolysis of a thiocyanate/complex ion pair giving formation constant of 0.25±0.17, 0.12±0.04, 0.11±0.06 and 0.06±0.04 for the complexes in the sequence above. In all but the last instance these are in excellent agreement with the values estimated by fitting the thiocynate induced changes in the UV-visible spectra of the complexes, 0.34±0.25, 0.14±0.07, 0.09±0.07 and 0.60±0.07 respectively. Laser flash photolysis studies on the nanosecond and picosecond time-scale failed to reveal any direct spectroscopic evidence for a radical pair species, but the absorbance of (NCS)2-√ was seen in all four systems. The effects of added electrolytes and of viscosity on the formation and decay of this intermediate were investigated and are reported in detail.  相似文献   

14.
Two tert-butylammonium decavanadate(V) salts with the formulae [(CH3)3CNH3]6[V10O28] · 8H2O (1) and [(CH3)3CNH3]4[H2V10O28] (2), have been synthesized and their crystal structures have been determined by means of single-crystal X-ray diffraction. The crystal structure of compound 1 is stabilized by electrostatic forces and an extensive network of hydrogen contacts involving anions, cations and water molecules. The anions and cations of this compound are arranged in layers perpendicular to the [010] direction following the sequence, cation-anion-cation. In the crystal structure of compound (2), each dihydrogen decavanadate(V) anion is joined to three adjacent polyanions by means of O(6)---H ··· O(4) hydrogen contacts forming layers parallel to the plane ( 01) and the hydrophobic groups of the cations are disposed in layers parallel to the anionic sheets. The thermal behaviour of both compounds has been studied. Compound 1 is an octahydrate and its thermal decomposition begins at 70°C with the loss of water of crystallization, while compound 2 is anhydrous and is consequently more stable, with decomposition starting at 200°C.  相似文献   

15.
Poly(β-phenylpropyl -aspartate), poly(β-phenylbutyl -aspartate), and poly(β-phenylpentyl -aspartate) exhibit a reversible transformation from a right-handed -helix (R) to a left-handed ω-helix (ωL) in the solid state. During this transition, the infrared (IR) dichroism of the side-chain ester group and the birefringence change drastically, showing that the side-chain conformations are different for these two helices. In the present study, for the purpose of elucidating the preferred side-chain conformation in each helix, we performed the computational analyses. The energy contours, the directions of the IR transition moments and the anisotropies in polarizability as functions of the first two dihedral angles of the side chain, χ1 and χ2 were calculated. Then, comparing them with the experimental IR dichroism and birefringence data, we elucidated the specific side-chain conformation preferred for each R or ωL skeleton. The preferred values of (χ1, χ2) were found to be (−75, −60°) for R and (180, 45°) for ωL.  相似文献   

16.
The X-ray molecular structure of buprenorphine hydrochloride [(C29H42O4N)+Cl] was determined. The molecule forms colourless tetragonal crystals; the space group is P412121 with eight molecules per unit cell of dimensions a = 11.507(2) Å and c = 41.952(9) Å. The structure was determined by direct methods and refined by the full-matrix least-squares procedure to R = 0.056 for 2251 observed reflections. The protonated buprenorphine (BPNH+) in the solid state adopts the T-shape form typical of benzomorphan compounds; the substituent group at the N atom is in the equatorial configuration and the cyclopropylmethyl side-chain is almost perpendicular to the piperidine ring. Theoretical studies of the conformations and the rotational energetics of BPNH+ were performed using both the semiquantitative MNDO and the force field (MM2) methods. The latter method predicted four low energy conformations about the N-C(21) and C(21)-C(22) bonds. Two of these were more significantly populated (59% and 30%). They may easily interconvert through only a single torsional process. The less-populated (30%) conformation was consistent with that adopted in the solid state. The MNDO method predicted different low energy conformations of the N-cyclopropylmethyl moiety. Neither method reproduced the favoured torsional angles adopted by the structurally analogous naltrexone molecule which has the opposite pharmacological profile.  相似文献   

17.
A new family of heteropolytungstate complexes (NH4)21[Ln(H2O)5{Ni(H2O)}2As4W40O140xH2O(Ln=Y, Ce, Pr, Nd, Sm, Eu, Gd) were prepared by the reaction of Na27[NaAs4W40O140]·60H2O with NiCl2·6H2O and Ln(NO3)3·xH2O at pH≈4.5. The crystal structures of (NH4)21[Gd(H2O)5{Ni(H2O)}2As4W40O140]·51H2O was determined by X-ray diffraction analysis and element analysis. The compound crystallizes in the monoclinic space group P21/n with a=19.754(3), b=24.298(4), c=39.350(6) Å, β=100.612(3)°, V=18564(5) Å3, Z=2, R1(wR2)=0.0544(0.0691). The central site S1 and two opposite sites S2 of the big cyclic ligand [As4W40O140]28− are occupied by one Ln3+and two Ni2+, respectively, each site supply four Od coordinating to metal ion, another one water molecule and other five water molecules coordinate, respectively, to Ni2+and Ln3+. Polyanion [Ln(H2O)5{Ni(H2O)}2As4W40O140]21− has C2v symmetry. IR and UV–vis spectra of [NaAs4W40O140]27− of the title compounds are discussed.  相似文献   

18.
The crystal structure of N-(2-hydroxy-5-chlorophenyl) salicylaldimine (C13H10NO2Cl) was determined by X-ray analysis. It crystallizes orthorhombic space group P212121 with a=12.967(2) Å, b=14.438(3) Å, c=6.231(3) Å, V=1166.5(6) Å3, Z=4, Dc=1.41 g cm−3 and μ(MoK)=0.315 mm−1. The title compound is thermochromic and the molecule is nearly planar. Both tautomeric forms (keto and enol forms in 68(3) and 32(3)%, respectively) are present in the solid state. The molecules contain strong intramolecular hydrogen bonds, N1–H1O1/O2 (2.515(1) and 2.581(2) Å) for the keto form and O1–H01N1 for the enol one. There is also strong intermolecular O2–HO1 hydrogen bonding (2.599(2) Å) between neighbouring molecules. Minimum energy conformations AM1 were calculated as a function of the three torsion angles, θ1(N1–C7–C6–C5), θ2(C8–N1–C7–C6) and θ3(C9–C8–N1–C7), varied every 10°. Although the molecule is nearly planar, the AM1 optimized geometry of the title compound is not planar. The non-planar conformation of the title compound corresponding to the optimized X-ray structure is the most stable conformation in all calculations.  相似文献   

19.
The molecular structure of 4,4′-sulfanidyl-bis-thiophenol (C12H10S3) has been determined by gas electron diffraction. Assuming identical geometry and D2h local symmetry for ---SC6H4S--- moieties, the following bond lengths (rg) and bond angles were obtained: C---H = 1.101 ± 0.005, S---H = 1.388 ± 0.019, (C---C)mean = 1.400 ± 0.003, (S---C)mean = 1.778 ± 0.004 Å, Car---S---Car = 103.5 ± 1.3, C---C(S)---C = 120.4 ± 0.3, C(H)---C(H)---H = 119.1 ± 0.9 and C---S---H = 94.6 ± 3.1°. Two ratational forms were found to reproduce the experimental data, characterized by dihedral angles of the benzene rings with respect to the CarSCar plane; 1 = 67.8 ± 2.0°, 2 = 4.5 ± 7.2°, and 1 = 69.4 ± 2.0δ, 2 = −26.6 ± 7.1°. Identical signs of 1 and 2 indicate that the two benzene rings are rotated in the same direction about the respective Scentral---C axes.  相似文献   

20.
CdII complexes with glycine (gly) and sarcosine (sar) were studied by glass electrode potentiometry, direct current polarography, virtual potentiometry, and molecular modelling. The electrochemically reversible CdII–glycine–OH labile system was best described by a model consisting of M(HL), ML, ML2, ML3, ML(OH) and ML2(OH) (M = CdII, L = gly) with the overall stability constants, as log β, determined to be 10.30 ± 0.05, 4.21 ± 0.03, 7.30 ± 0.05, 9.84 ± 0.04, 8.9 ± 0.1, and 10.75 ± 0.10, respectively. In case of the electrochemically quasi-reversible CdII–sarcosine–OH labile system, only ML, ML2 and ML3 (M = CdII, L = sar) were found and their stability constants, as log β, were determined to be 3.80 ± 0.03, 6.91 ± 0.07, and 8.9 ± 0.4, respectively. Stability constants for the ML complexes, the prime focus of this work, were thus established with an uncertainty smaller than 0.05 log units. The observed departure from electrochemical reversibility for the Cd–sarcosine–OH system was attributed mainly to the decrease in the transfer coefficient . The MM2 force field, supplemented by additional parameters, reproduced the reported crystal structures of diaqua-bis(glycinato-O,N)nickel(II) and fac-tri(glycinato)-nickelate(II) very well. These parameters were used to predict structures of all possible isomers of (i) [Ni(H2O)4(gly)]+ and [Ni(H2O)4(sar)]+; and (ii) [Ni(H2O)3(IDA)] and [Ni(H2O)3(MIDA)] (IDA = iminodiacetic acid, MIDA = N-methyl iminodiacetic acid) by molecular mechanics/simulated annealing methods. The change in strain energy, ΔUstr, that accompanies the substitution of one ligand by another (ML + L′ → ML′ + L), was computed and a strain energy ΔUstr = +0.28 kcal mol−1 for the reaction [Ni(H2O)4(gly)]+ + sar → [Ni(H2O)4(sar)]+ + gly was found. This predicts the monoglycine complex to be marginally more stable. By contrast, for the reaction [Ni(H2O)3IDA] + MIDA → [Ni(H2O)3MIDA] + IDA, ΔUstr = −0.64 kcal mol−1, and the monoMIDA complex is predicted to be more stable. This correlates well with (i) stability constants for Cd–gly and Cd–sar reported here; and (ii) known stability constants of ML complex for glycine, sarcosine, IDA, and MIDA.  相似文献   

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