Theoretical study of HCN(+) + C2H2 reaction

A detailed theoretical investigation for the ion-molecule reaction of HCN (+) with C 2H 2 is performed at the B3LYP/6-311G(d,p) and CCSD(T)/6-311++G(3df,2pd) (single-point) levels. Possible energetically allowed reaction pathways leading to various low-lying dissociation products are probed. It is shown that eight dissociation products P 1 (H 2C 3N (+)+H), P 2 (CN+C 2H 3 (+)), P 3 (HC 3N (+)+H 2), P 4 (HCCCNH (+)+H), P 5 (H 2NCCC (+)+H), P 6 (HCNCCH (+)+H), P 7 (C 2H 2 (+)+HCN), and P 8 (C 2H 2 (+)+HNC) are both thermodynamically and kinetically accessible. Among the eight dissociation products, P 1 is the most abundant product. P 7 and P 3 are the second and third feasible products but much less competitive than P 1 , followed by the almost negligible product P 2 . Other products, P 4 (HCCCNH (+)+H), P 5 (HCNCCH (+)+H), P 6 (H 2NCCC (+)+H), and P 8 (C 2H 2 (+)+HNC) may become feasible at high temperatures. Because the intermediates and transition states involved in the reaction HCN (+) + C 2H 2 are all lower than the reactant in energy, the title reaction is expected to be rapid, as is consistent with the measured large rate constant at room temperature. The present calculation results may provide a useful guide for understanding the mechanism of HCN (+) toward other pi-bonded molecules.     

Reaction mechanism of deoxyribonucleotidase: a theoretical study

The reaction mechanism of human deoxyribonucleotidase (dN) is studied using high-level quantum-chemical methods. dN catalyzes the dephosphorylation of deoxyribonucleoside monophosphates (dNMPs) to their nucleoside form in human cells. Large quantum models are employed (99 atoms) based on a recent X-ray crystal structure. The calculations support the proposed mechanism in which Asp41 performs a nucleophilic attack on the phosphate to form a phospho-enzyme intermediate. Asp43 acts in the first step as an acid, protonating the leaving nucleoside, and in the second step as a base, deprotonating the lytic water. No pentacoordinated intermediates could be located.     

Higher hydrogen uptake capacity of C2H4Ti+ than C2H4Ti: a quantum chemical study

Using density functionals theory, we show that gravimetric hydrogen uptake of C₂H₄Ti complex and its cation, C₂H₄Ti⁺, differ by about 2 wt%. Six and five hydrogen molecules are found to be adsorbed on C₂H₄Ti⁺ and C₂H₄Ti complexes thereby showing a hydrogen-uptake capacity of 13.74 and 11.72 wt%, respectively. All hydrogen molecules are adsorbed in molecular form on C₂H₄Ti⁺ ion with an increase in metal bond strength, whereas in some cases, the hydrogen molecules are found to be dissociated on C₂H₄Ti neutral complex. The uptake capacity of neutral C₂H₄Ti complex shown in this work is in excellent agreement with that reported experimentally, Phillips and Shivaram (Phys Rev Lett 100:105505, 2008). The H₂ adsorption energy and its dependence on exchange and correlation functions in density functionals method were illustrated. Even after the adsorption of maximum number of hydrogen molecules on C₂H₄Ti and C₂H₄Ti⁺ complexes, Ti and Ti⁺ remain strongly bound to C₂H₄ substrate.     

A theoretical study of the reaction of HCO+ with C2H2

A theoretical study was performed for the reaction of formyl cation and acetylene to give C₃H+O in flames and C₂H (nonclassical)+CO, both in flames and in interstellar clouds. The corresponding Potential Energy Surface (PES) was studied at the B3LYP/cc‐pVTZ level of theory, and single‐point calculations on the B3LYP geometries were carried out at the CCSD(T)/cc‐pVTZ level. Our results display a route to propynal evolving energetically under C₂H (nonclassical)+CO and, consequently, accessible in interstellar clouds conditions. This route connects the most stable C₃H₃O⁺ isomer (C2‐protonated propadienone) with a species from which propynal may be produced in a dissociative electron recombination reaction. The reaction channel to produce the C₃H+O evolves basically through two TSs and presents an endothermicity of 63.9 kcal/mol at 2000 K. According to our Gibbs energy profiles, the C2‐protonated propadienone is the most stable species at low–moderate temperatures and, consequently, could play a certain role in interstellar chemistry. On the contrary, in combustion chemistry conditions (2000 K) the C₂H (nonclassical)+CO products are the most thermodynamically favored species. © 2000 John Wiley & Sons, Inc. J Comput Chem 21: 35–42, 2000     

Kinetics of Al + H2O reaction: theoretical study

Quantum chemical calculations were carried out to study the reaction of Al atom in the ground electronic state with H(2)O molecule. Examination of the potential energy surface revealed that the Al + H(2)O → AlO + H(2) reaction must be treated as a complex process involving two steps: Al + H(2)O → AlOH + H and AlOH + H → AlO + H(2). Activation barriers for these elementary reaction channels were calculated at B3LYP/6-311+G(3df,2p), CBS-QB3, and G3 levels of theory, and appropriate rate constants were estimated by using a canonical variational theory. Theoretical analysis exhibited that the rate constant for the Al + H(2)O → products reaction measured by McClean et al. must be associated with the Al + H(2)O → AlOH + H reaction path only. The process of direct HAlOH formation was found to be negligible at a pressure smaller than 100 atm.     

Experimental and theoretical studies of the C2F4 + O reaction: nonadiabatic reaction mechanism

In this work, the C(2)F(4)(X(1)A(g)) + O((3)P) reaction was investigated experimentally using molecular beam-threshold ionization mass spectrometry (MB-TIMS). The major primary products were observed to be CF(2)O (+ CF(2)) and CF(3) (+ CFO), with measured approximate yields of % versus %, respectively, neglecting minor products. Furthermore, the lowest-lying triplet and singlet potential energy surfaces for this reaction were constructed theoretically using B3LYP, G2M(UCC, MP2), CBS-QB3, and G3 methods in combination with various basis sets such as 6-31G(d), 6-311+G(3df), and cc-pVDZ. The primary product distribution for the multiwell multichannel reaction was then determined by RRKM statistical rate theory and weak-collision master equation analysis. It was found that the observed production of CF(3) (+ CFO) can only occur on the singlet surface, in parallel with formation of ca. 5 times more CF(2)O(X) + CF(2)(X(1)A(1)). This requires fast intersystem crossing (ISC) from the triplet to the singlet surface at a rate of ca. 4 x 10(12) s(-1). The theoretical calculations combined with the experimental results thus indicate that the yield of triplet CF(2)(?(3)B(1)) + CF(2)O formed on the triplet surface prior to ISC is < or =35%, whereas singlet CF(2)(X(1)A(1)) + CF(2)O is produced with yield > or =60%, after ISC. In addition, the thermal rate coefficients k(O + C(2)F(4)) in the T = 150-1500 K range were computed using multistate transition state theory and can be expressed as k(T) = 1.67 x 10(-16) x T(1.48) cm(3) molecule(-1) s(-1); they are in agreement with the available experimental results in the T = 298-500 K range.     

Reaction mechanism of ferulic acid scavenging OH and NO2 radicals: a theoretical study

Structural Chemistry - As a derivative of cinnamic acid, ferulic acid (FA) is a bio-active ingredient of many foods and is considered to be a good natural antioxidant. A theoretical study on the...     

The C4H7+ cation. A theoretical investigation

The potential energy surface of the C4H7+ cation has been investigated with ab initio quantum chemical theory. Extended basis set calculations, including electronic correlation, show that cyclobutyl and cyclopropylcarbinyl cation are equally stable isomers. The saddle point connecting these isomers lies 0.6 kcal/mol above the minima. The global C4H7+ minimum corresponds to the 1-methylallyl cation, which is 9.0 kcal/mol more stable than the cyclobutyl and the cyclopropylcarbinyl cation and 9.5 kcal/mol below the 2-methylallyl cation. These results are in excellent agreement with experimental data.     

Radical-molecule reaction C3H+H2O: a mechanistic study

Despite the importance of the C(3)H radical in both combustion and interstellar space, the reactions of C(3)H toward stable molecules have never been studied. In this paper, we report our detailed mechanistic study on the radical-molecule reaction C(3)H+H(2)O at the Becke's three parameter Lee-Yang-Parr-B3LYP6-311G(d,p) and coupled cluster with single, double, and triple excitations-CCSD(T)6-311G(2d,p) (single-point) levels. It is shown that the C(3)H+H(2)O reaction initially favors formation of the carbene-insertion intermediates HCCCHOH (1a,1b) rather than the direct H- or OH-abstraction process. Subsequently, the isomers (1a,1b) can undergo a direct H- extrusion to form the well-known product propynal HCCCHO (P(5)). Highly competitively, (1a,1b) can take the successive 1,4- and 1,2-H-shift interconversion to isomer H(2)CCCHO(2a,2b) and then to isomer H(2)CCHCO(3a,3b), which can finally take a direct C-C bond cleavage to give product C(2)H(3) and CO (P(1)). The other products are kinetically much less feasible. With the overall entrance barrier 10.6 kcal/mol, the title reaction can be important in postburning processes. Particularly, our calculations suggest that the title reaction may play a role in the formation of the intriguing interstellar molecule, propynal HCCCHO. The calculated results will also be useful for the analogous C(3)H reactions such as with ammonia and alkanes.     

New calculations on the ion-molecule processes C2H2(+) + H2 --> C2H3(+) + H and C2H2(+) + H2 --> C2H4+

New high-level quantum chemical calculations have been undertaken to understand the rates and mechanisms of the reactive and associative channels for the reactants C2H2(+) + H2. The reactive channel, which produces C2H3(+) + H, has been shown to be slightly endothermic, confirming earlier calculations at a somewhat lower level and in agreement with some recent experimental work. The associative channel, leading to C2H4+, has been shown to proceed via a transition state with negative energy relative to the reactants, so that association is predicted to be efficient. This result is in conflict with an earlier theoretical study but in agreement with low-temperature experimental measurements.     

Reaction mechanism between carbonyl oxide and hydroxyl radical: a theoretical study

The reaction mechanism of carbonyl oxide with hydroxyl radical was investigated by using CASSCF, B3LYP, QCISD, CASPT2, and CCSD(T) theoretical approaches with the 6-311+G(d,p), 6-311+G(2df, 2p), and aug-cc-pVTZ basis sets. This reaction involves the formation of H2CO + HO2 radical in a process that is computed to be exothermic by 57 kcal/mol. However, the reaction mechanism is very complex and begins with the formation of a pre-reactive hydrogen-bonded complex and follows by the addition of HO radical to the carbon atom of H2COO, forming the intermediate peroxy-radical H2C(OO)OH before producing formaldehyde and hydroperoxy radical. Our calculations predict that both the pre-reactive hydrogen-bonded complex and the transition state of the addition process lie energetically below the enthalpy of the separate reactants (DeltaH(298K) = -6.1 and -2.5 kcal/mol, respectively) and the formation of the H2C(OO)OH adduct is exothermic by about 74 kcal/mol. Beyond this addition process, further reaction mechanisms have also been investigated, which involve the abstraction of a hydrogen of carbonyl oxide by HO radical, but the computed activation barriers suggest that they will not contribute to the gas-phase reaction of H2COO + HO.     

Arrhenius parameters for the reactions CH3. + C4H10 → CH4 + C4H9. and C2H5. + C4H10 → C2H6 + C4H9.

Study of n-butane pyrolysis at high temperature in a flow system allows measurement of the sum of the rate constants of the initiation reactions and of the Arrhenius parameters of the reactions Established data for k₁/k₂ allow estimation of k₁ for 951°K and this, with recent thermochemical data, yields the result log k_?1 (l.mole s^?1) = 8.5, in remarkable agreement with a recent measurement [20] but over si×ty times smaller than conventional assumption. The product k₃k₄ (l.²mole^?2s^?2) is found to be associated with the Arrhenius parameters log (A₃A₄) = 21.90 ± 0.6 and (E₃ + E₄) = 38.3 ± 2.7 kcal/mole. These values are much higher than would be e×pected on the basis of low temperature estimates. Independent evaluation gives log A₄ = 10.5 ± 0.4 (l.mole^?1s^?1) and E₄ = 20.1 ± 1.7 kcal/mole, hence log A₃ = 11.4 ± 0.8 (l.mole^?1s^?1) and E₃ = 18.2 ± 3.2 kcal/mole. These values are shown to be entirely consistent with a wide range of results from pyrolytic studies, and it is argued that they further confirm the view that Arrhenius plots for alkyl radical–alkane metathetical reactions are strongly curved, in part due to tunneling and, appreciably, to other as yet unidentified effects. Since there is published evidence that metathetical reactions involving hydrogen atoms show even greater curvature, it is suggested that this may be a characteristic of many metathetical reactions.     

OH+ C2H2N←C2H3 + NO→CH3 + NCO反应机理的密度泛函理论研究

应用密度泛函理论研究了反应通道(a)C2H3 NO→CH3 NCO和(b)C2H3 NO→OH C2H2N的反应机理．在B3LYP／6-31G(d)水平上优化了反应物、中间体、过滤态、产物的几何构型，通过频率分析确定了11个中间体和10个过渡态．所有的反应物、中间体、过渡态、产物都在CCSD／6-311 G(d，P)水平上进行了单点能较正．并讨论了反应的异构化过程．计算结果表明10是能量最低的中间体，比反应物的能量低308．479kJ／mol；过渡态1／3，2／5，3／4，4／8比反应物的能量高，其中3／4是能量最高的过渡态，比反应物的能量高91．894kJ／mol．通道(a)和(b)的理论放热值分别为111．059和96．619kJ／mol．     

Quantum chemical and theoretical kinetics study of the O(3P) + C2H2 reaction: a multistate process

The potential energy surfaces of the two lowest-lying triplet electronic surfaces 3A' and 3A' for the O(3P) + C2H2 reaction were theoretically reinvestigated, using various quantum chemical methods including CCSD(T), QCISD, CBS-QCI/APNO, CBS-QB3, G2M(CC,MP2), DFT-B3LYP and CASSCF. An efficient reaction pathway on the electronically excited 3A' surface resulting in H(2S) + HCCO(A2A') was newly identified and is predicted to play an important role at higher temperatures. The primary product distribution for the multistate multiwell reaction was then determined by RRKM statistical rate theory and weak-collision master equation analysis using the exact stochastic simulation method. Allowing for nonstatistical behavior of the internal rotation mode of the initial 3A' adducts, our computed primary-product distributions agree well with the available experimental results, i.e., ca. 80% H(2S) + HCCO(X2A' + A2A') and 20% CH2(X3B1) + CO(X1sigma+) independent of temperature and pressure over the wide 300-2000 K and 0-10 atm ranges. The thermal rate coefficient k(O + C2H2) at 200-2000 K was computed using multistate transition state theory: k(T) = 6.14 x 10(-15)T (1.28) exp(-1244 K/T) cm3 molecule(-1) s(-1); this expression, obtained after reducing the CBS-QCI/APNO ab initio entrance barriers by 0.5 kcal/mol, quasi-perfectly matches the experimental k(T) data over the entire 200-2000 K range, spanning 3 orders of magnitude.     

Reaction dynamics study of O- + C2H2 with crossed beams and density-functional theory calculations

The reactions between O(-) and C(2)H(2) have been studied using the crossed-beam technique and density-functional theory (DFT) calculations in the collision energy range from 0.35 to 1.5 eV (34-145 kJmol). Both proton transfer and C-O bond formation are observed. The proton transfer channel forming C(2)H(-) is the dominant pathway. The center-of-mass flux distributions of the C(2)H(-) product ions are highly asymmetric, with maxima close to the velocity and direction of the precursor acetylene beam, characteristic of direct reactions. The reaction quantitatively transforms the entire reaction exothermicity into internal excitation of the products, consistent with mixed energy release in which the proton is transferred in a configuration in which both the breaking and the forming bonds are extended. The C-O bond formation channel producing HC(2)O(-) displays a distinctive kinematic picture in which the product distribution switches from predominantly forward scattering with a weak backward peak to sideways scattering as the collision energy increases. At low collision energies, the reaction occurs through an intermediate that lives a significant fraction of a rotational period. The asymmetry in the distribution leads to a lifetime estimate of 600 fs, in reasonable agreement with DFT calculations showing that hydrogen-atom migration is rate limiting. At higher collision energies, the sideways-scattered products arise from repulsive energy release from a bent transition state.     

激光促进乙烯在磷酸铁上的表面反应

激光促进表面反应;丁二烯;激光促进乙烯在磷酸铁上的表面反应     

Theoretical study of the dynamics of the H+CH4 and H+C2H6 reactions using a specific-reaction-parameter semiempirical Hamiltonian

We present a theoretical study of the reactions of hydrogen atoms with methane and ethane molecules and isotopomers. High-accuracy electronic-structure calculations have been carried out to characterize representative regions of the potential-energy surface (PES) of various reaction pathways, including H abstraction and H exchange. These ab initio calculations have been subsequently employed to derive an improved set of parameters for the modified symmetrically-orthogonalized intermediate neglect of differential overlap (MSINDO) semiempirical Hamiltonian, which are specific to the H+alkane family of reactions. The specific-reaction-parameter (SRP) Hamiltonian has then been used to perform a quasiclassical-trajectory study of both the H+CH4 and H+C2H6 reactions. The calculated values of dynamics properties of the H+CH4-->H2+CH3 reaction and isotopologues, including alkyl product speed distributions, diatomic product internal-state distributions, and cross sections, are generally in good agreement with experiment and with the results provided by the ZBB3 PES [Z. Xie et al., J. Chem. Phys. 125, 133120 (2006)]. The results of trajectories propagated with the SRP Hamiltonian for the H+C2H6-->H2+C2H5 reaction also agree with experiment. The level of agreement between the results calculated with the SRP Hamiltonian and experiment in both the H+methane and H+ethane reactions indicates that semiempirical Hamiltonians can be improved for not only a specific reaction but also a family of reactions.     

Gas-phase reactions of the bare Th2+ and U2+ ions with small alkanes, CH4, C2H6, and C3H8: experimental and theoretical study of elementary organoactinide chemistry

The gas-phase reactions of two dipositive actinide ions, Th(2+) and U(2+), with CH(4), C(2)H(6), and C(3)H(8) were studied by both experiment and theory. Fourier transform ion cyclotron resonance mass spectrometry was employed to study the bimolecular ion-molecule reactions; the potential energy profiles (PEPs) for the reactions, both observed and nonobserved, were computed by density functional theory (DFT). The experiments revealed that Th(2+) reacts with all three alkanes, including CH(4) to produce ThCH(2)(2+), whereas U(2+) reacts with C(2)H(6) and C(3)H(8), with different product distributions than for Th(2+). The comparative reactivities of Th(2+) and U(2+) toward CH(4) are well explained by the computed PEPs. The PEPs for the reactions with C(2)H(6) effectively rationalize the observed reaction products, ThC(2)H(2)(2+) and UC(2)H(4)(2+). For C(3)H(8) several reaction products were experimentally observed; these and additional potential reaction pathways were computed. The DFT results for the reactions with C(3)H(8) are consistent with the observed reactions and the different products observed for Th(2+) and U(2+); however, several exothermic products which emerge from energetically favorable PEPs were not experimentally observed. The comparison between experiment and theory reveals that DFT can effectively exclude unfavorable reaction pathways, due to energetic barriers and/or endothermic products, and can predict energetic differences in similar reaction pathways for different ions. However, and not surprisingly, a simple evaluation of the PEP features is insufficient to reliably exclude energetically favorable pathways. The computed PEPs, which all proceed by insertion, were used to evaluate the relationship between the energetics of the bare Th(2+) and U(2+) ions and the energies for C-H and C-C activation. It was found that the computed energetics for insertion are entirely consistent with the empirical model which relates insertion efficiency to the energy needed to promote the An(2+) ion from its ground state to a prepared divalent state with two non-5f valence electrons (6d(2)) suitable for bond formation in C-An(2+)-H and C-An(2+)-C activated intermediates.     

Vibrationally mediated photodissociation of C2H4+

We report the vibrationally mediated photodissociation dynamics of C2H4+ excited through the B2Ag state. Vibrational state-selected ions were prepared by two-photon resonant, three-photon ionization of ethylene via (pi, 3s) and (pi, 3p) Rydberg intermediate states in the wavelength range 298-349 nm. Absorption of a fourth photon led to dissociation of the cation, and images of the product ions C2H3+ and C2H2+ were simultaneously recorded using reflectron multimass velocity map imaging. Analysis of the multimass images yielded, with high precision, both the total translational energy distributions for the two dissociation channels and the branching between them as a function of excitation energy. The dissociation of ions that were initially prepared with torsional excitation exceeding the barrier to planarity in the cation ground state consistently gave enhanced branching to the H elimination channel. The results are discussed in terms of the influence of the initial state preparation on the competition between the internal conversion to the ground state and to the first excited state.