Negative pions in chemistry

Measuring the probability of pion capture by hydrogen provides information on the properties of the chemical bond of hydrogen in molecules, in particular, on the electron density near the protons. This is shown in studies of the temperature dependence of pion capture in hydrogen-bonded liquids, of the influence of electronegative groups on the hydrogen atom in simple organic molecules, and of the effect of coordination on water molecules in aquacomplexes and aqueous solutions.     

Deuteration triggered downward shift of dielectric phase transition temperature in a hydrogen-bonded molecular crystal

Deuteration of hydrogen-bonded phase transition crystals can increase the transition temperatures due to the isotope effect. But rare examples show the opposite trend that originates from the structural changes of the hydrogen bond, known as the geometric H/D isotope effect. Herein, we report an organic crystal, diethylammonium hydrogen 1,4-terephthalate, exhibits a reversible structural phase transition and dielectric switching. Structural study shows the cations reside in channels formed by on...     

O?H stretching force constant in associated methanol species and the cooperativity effect

The effect of molecular interaction on the O? H stretching force constant of methanol (MeOH) is reported for its associated species. The various electron donors (D) and acceptors (A) considered include organic molecules such as methanol, dimethylether, acetone, acetonitrile, dimethyl formamide, pyridine, and ions such as F^?, Cl^?, Li⁺, and H⁺. The variation in the O? H stretching force constant of MeO? H…?D species on interaction with the electron acceptor such as in the species is explained on the basis of the cooperativity effect. (CE ). The effect is discussed in terms of the relationship CE = (ΔF/F) × 100, where ΔF is the reduction is force constant of the hydrogen-bonded O? H stretching mode of the associated methanol species MeOH…?D when the lone pair electrons on oxygen of the methanol molecule are involved in hydrogen bonding with A, and F is the hydrogen-bonded O? H stretching force constant of the species when the lone pair electrons are free. The cooperativity effect (CE ) is found to increase with increasing electron acceptor and electron donor capacities of A and D. The calculated force constants are compared with the experimental results.     

NMR parameters and geometries of OHN and ODN hydrogen bonds of pyridine-acid complexes

In this paper, equations are proposed which relate various NMR parameters of OHN hydrogen-bonded pyridine-acid complexes to their bond valences which are in turn correlated with their hydrogen-bond geometries. As the valence bond model is strictly valid only for weak hydrogen bonds appropriate empirical correction factors are proposed which take into account anharmonic zero-point energy vibrations. The correction factors are different for OHN and ODN hydrogen bonds and depend on whether a double or a single well potential is realized in the strong hydrogen-bond regime. One correction factor was determined from the known experimental structure of a very strong OHN hydrogen bond between pentachlorophenol and 4-methylpyridine, determined by the neutron diffraction method. The remaining correction factors which allow one also to describe H/D isotope effects on the NMR parameters and geometries of OHN hydrogen bond were determined by analysing the NMR parameters of the series of protonated and deuterated pyridine- and collidine-acid complexes. The method may be used in the future to establish hydrogen-bond geometries in biologically relevant functional OHN hydrogen bonds.     

The Formation of Imidazolium Salt Intimate (Contact) Ion Pairs in Solution

1‐n‐Butyl‐2,3‐dimethylimidazolium (BMMI) ionic liquids (ILs) associated with different anions undergo H/D exchange preferentially at 2‐Me group of the imidazolium in deuterated solvents. This process is mainly related to the existence of ion pairs rather than the anion basicity. The H/D exchange occurs in solvents (CDCl₃ and MeCN for instance) in which intimate contact ion pairs are present and the anion possesses a labile H in its structure, such as hydrogen carbonate and prolinate. In D₂O, separated ion pairs are formed and the H/D exchange does not occur. A plausible catalytic cycle is that the IL behaves as a neutral base in the course of all H/D exchange processes. NMR experiments, density functional calculations, and molecular dynamics simulations corroborate these hypotheses.     

Structural isotopic effects in the smallest chiral amino acid: observation of a structural phase transition in fully deuterated alanine

A first study of possible changes instigated by deuteration in amino acids was carried out using neutron diffraction, inelastic neutron scattering, and Raman scattering in l-alanine, C2H4(NH2)COOH. Careful analysis of the structural parameters shows that deuteration of l-alanine engenders significant geometric changes as a function of temperature, which can be directly related to the observation of new lattice vibration modes in the Raman spectra. The combination of the experimental data suggests that C2D4(ND2)COOD undergoes a structural phase transition (or a structural rearrangement) at about 170 K. Considering that this particular amino acid is a hydrogen-bonded system with short hydrogen bonds (O...H approximately 1.8 A), we evoke the Ubbelohde effect to conclude that substitution of hydrogen for deuterium gives rise to changes in the hydrogen-bonding interactions. The structural differences suggest distinct relative stabilities for the hydrogenous and deuterated l-alanine.     

氢键复合物中键长变化与振动频率移动相关性重访(英文)

X―H···Y(Y为电子供体)型氢键形成时,X―H键长伸长或缩短与相应的X―H伸缩振动频率红移或蓝移存在较强的相关性,这也是氢键光谱检测和研究的基础.但是,最近的理论研究却推翻了这一观点,认为X―H键长变化和相应的X―H伸缩振动频率移动在有些氢键体系中并不存在相关性(McDowell,S.A.C.;Buckingham,A.D.J.Am.Chem.Soc.2005,127,15515.).本文中,我们采用更为可信的计算方法,对这一问题进行再研究.结果表明是错误的计算方法导致了McDowell和Buckingham得出错误的结论.在McDowell和Buckingham所研究的氢键体系中,X―H键长变化和相应的X―H伸缩振动频率移动仍存在较强的相关性.     

Cooperativity in a cycloalkane-1,2/1,3-polyol corona: Topological hydrogen bonding in 1,2-diol motifs

A corona, consisting of 18 carbon atoms bearing 12 hydroxy groups in a continuous hydrogen-bonded chain, is built up by alternating degenerate conformations of alternating alkane-1,2-diol and 1,3-diol motifs. Geometries, proton nuclear magnetic resonance shifts and interaction energies for the dodecahydroxycyclo-octadecane and selected fragments are determined by density functional calculations at the B3LYP/6-311+G(d,p) level. Cooperative effects of O–H⋯O–H bonding are evident from the simple juxtaposition of these two motifs with a common OH group in butane-1,2,4-triol conformers. Bracketing a 1,2-diol motif with two 1,3-diol motifs in hexane-1,3,4,6-tetrol leads to a structure in which the 1,2-diol motif displays a bond critical point for hydrogen bonding. This is associated with enhancement of the shift of the hydrogen-bonded OH proton and of the corresponding H⋯O interaction energy. The full corona has a complete outer ring of O–H⋯O–H bond paths, and an inner ring of bond paths, due to C–H⋯H–C hydrogen–hydrogen bonding, which result in a central ring critical point. The topological O–H⋯O–H hydrogen bond, never seen in simple alkane-1,2-diols, is associated with cooperative enhancement of the H⋯O interaction energy, but this is not a necessary condition for a bond path: values for topological C–H⋯H–C hydrogen–hydrogen bonds can be as low as −0.4 kcal mol⁻¹.     

Hydrogen-bonding-induced planar, rigid, and zigzag oligoanthranilamides. Synthesis, characterization, and self-assembly of a metallocyclophane

Four oligoanthranilamides 1-4, which are incorporated with three, five, seven, or nine benzene units, respectively, have been synthesized and characterized. X-ray analysis, 1D and 2D (1)H NMR, and IR experiments reveal that all the new oligoamides adopt rigid, planar and zigzagged conformations in both solution and solid state, which are stabilized by intramolecular three-center hydrogen bonding. A 5-mer oligomer 22, which is incorporated with two acetylene groups at the ends, has also been synthesized and utilized for the self-assembly of a rigid hydrogen-bonded metallocyclophane. The new rigid oligoanthranilamides represent useful building blocks for the construction of supramolecular architectures.     

Characterization of fluxional hydrogen-bonded complexes of acetic acid and acetate by NMR: geometries and isotope and solvent effects

1H, (2)H, and (13)C NMR spectra of enriched CH(3)(13)COOH acid without and in the presence of tetra-n-butylammonium acetate have been measured around 110 K using a liquefied Freon mixture CDF(3)/CDF(2)Cl as a solvent, as a function of the deuterium fraction in the mobile proton sites. For comparison, spectra were also taken of the adduct CH(3)(13)COOH.SbCl(5) 1 and of CH(2)Cl(13)COOH under similar conditions, as well as of CH(3)(13)COOH and CH(3)(13)COO(-) dissolved in H(2)O and D(2)O at low and high pH at 298 K. The low temperatures employed allowed us to detect several well-known and novel hydrogen-bonded complexes in the slow hydrogen bond exchange regime and to determine chemical shifts and coupling constants as well as H/D isotope effects on chemical shifts from the fine structure of the corresponding signals. The measurements show that self-association of both carboxylic acids in Freon solution gives rise exclusively to the formation of cyclic dimers 2 and 3 exhibiting a rapid degenerate double proton transfer. For the first time, a two-bond coupling of the type (2)J(CH(3)COOH) between a hydrogen-bonded proton and the carboxylic carbon has been observed, which is slightly smaller than half of the value observed for 1. In addition, the (1)H and (2)H chemical shifts of the HH, HD, and the DD isotopologues of 2 and 3 have been determined as well as the corresponding HH/HD/DD isotope effects on the (13)C chemical shifts. Similar "primary", "vicinal", and "secondary" isotope effects were observed for the novel 2:1 complex "dihydrogen triacetate" 5 between acetic acid and acetate. Another novel species is the 3:1 complex "trihydrogen tetraacetate" 6, which was also characterized by a complex degenerate combined hydrogen bond- and proton-transfer process. For comparison, the results obtained previously for hydrogen diacetate 4 and hydrogen maleate 7 are discussed. Using an improved (1)H chemical shift-hydrogen bond geometry correlation, the chemical shift data are converted into hydrogen bond geometries. They indicate cooperative hydrogen bonds in the cyclic dimers; i.e., widening of a given hydrogen bond by H/D substitution also widens the other coupled hydrogen bond. By contrast, the hydrogen bonds in 5 are anticooperative. The measurements show that ionization shifts the (13)C signal of the carboxyl group to low field when the group is immersed in water, but to high field when it is embedded in a polar aprotic environment. This finding allows us to understand the unusual ionization shift of aspartate groups in the HIV-pepstatin complex observed by Smith, R.; Brereton, I. M.; Chai, R. Y.; Kent, S. B. H. Nature Struct. Biol. 1996, 3, 946. It is demonstrated that the Freon solvents used in this study are better environments for model studies of amino acid interactions than aqueous or protic environments. Finally, a novel correlation of the hydrogen bond geometries with the H/D isotope effects on the (13)C chemical shifts of carboxylic acid groups is proposed, which allows one to estimate the hydrogen bond geometries and protonation states of these groups. It is shown that absence of such an isotope effect is not only compatible with an isolated carboxylate group but also with the presence of a short and strong hydrogen bond.     

Lattice effects on the spin-crossover profile of a mononuclear manganese(III) cation

Six solvated salts of a mononuclear manganese(III) complex with a chelating hexadentate Schiff base ligand are reported. One member of the series, [MnL]PF(6)?0.5?CH(3)OH (1), shows a rare low-spin (LS) electronic configuration between 10-300?K. The remaining five salts, [MnL]NO(3)?C(2)H(5)OH(2), [MnL]BF(4)?C(2)H(5)OH(3), [MnL]CF(3)SO(3)?C(2)H(5)OH (4), [MnL]ClO(4)?C(2)H(5)OH (5) and [MnL]ClO(4)?0.5?CH(3)CN (6), all show gradual incomplete spin-crossover (SCO) behaviour. The structures of all were determined at 100?K, and also at 293?K in the case of 3-6. The LS salt [MnL]PF(6)?0.5?CH(3)OH is the only member of the series that does not exhibit strong hydrogen bonding. At 100?K two of the four SCO complexes (2 and 4) assemble into 1D hydrogen-bonded chains, which weaken or rupture on warming. The remaining SCO complexes 3, 5 and 6 do not form 1D hydrogen-bonded chains, but instead exhibit discrete hydrogen bonding between cation/counterion, cation/solvent or counterion/solvent and show no significant change on warming.     

Quantitative relationships between bond lengths,stretching vibrational frequencies,bond force constants,and bond orders in the hydrogen-bonded complexes involving hydrogen halides

To uncover the correlation between the bond length change and the corresponding stretching frequency shift of the proton donor D–H upon hydrogen bond formation, a series of hydrogen-bonded complexes involving HF and HCl which exhibit the characteristics of red-shifted hydrogen bond were investigated at the MP2/aug-cc-pVTZ, M062X/aug-cc-pVTZ, and B3LYP/aug-cc-pVTZ(GD3) levels of theory with CP optimizations. A statistical analysis of these complexes leads to the quantitative illustrations of the relations between bond length and stretching vibrational frequency, between bond length and bond force constant, between stretching vibrational frequency and bond force constant, between bond length and bond order for hydrohalides in a mathematical way, which would provide valuable insights into the explanation of the geometrical and spectroscopic behaviors during hydrogen bond formation.     

Hydrogen-bonded 1D and 2D Assemblies of Tetraiso-butyl-resorcin[4]arene in the Crystalline State

1 INTRODUCTION There is continuing interest in the assembly of molecular capsules based on concomitant formation of multiple hydrogen bonds between smaller mole- cular components[1]. A particularly attractive buil- ding block is calix[4]resorcinarenes with eight pen- dant hydroxyl functional groups[2]. In a crystal engi- neering design strategy for molecular self-assembly, cocrystallization of C-methylcalix[4]resorcinarenes with nitrogen-donor molecules such as pyridines in the presence …     

Long-range deuterium isotope effects on (13)C chemical shifts of intramolecularly hydrogen-bonded N-substituted 3-(cycloamine)thiopropionamides or amides: a case of electric field effects

A series of intramolecularly hydrogen-bonded N-substituted 3-(piperidine, morpholine, N-methylpiperazine)thiopropionamides and some corresponding amides have been studied with special emphasis on hydrogen bonding. The compounds have been selected in order to vary and to minimize the N...N distance. Geometries, charge distributions, and chemical shifts of these compounds are obtained from DFT-type BP3LYP calculations. 1H and 13C 1D and 2D NMR experiments were performed to obtain H,H coupling constants, 13C chemical shifts assignments, and deuterium isotope effects on13C chemical shifts. Variable-temperature NMR studies and 2D exchange NMR spectra have been used to describe the rather complicated conformational behavior mainly governed by the ring flipping of the piperidine (morpholine) rings and intramolecular hydrogen bonding. Unusual long-range deuterium isotope effects on 13C chemical shifts are observed over as far as eight bonds away from the site of deuteriation. The isotope effects are related to the N...N distances, thus being related to the hydrogen bonding and polarization of the N-H bond. Arguments are presented showing that the deuterium isotope effects on 13C chemical shifts originate in electric field effects.     

A theoretical prediction of stability in hydrogen-bonded complexes formed between oxirane and oxetane rings with HX (X=F and Cl)

The optimised geometries of heterocyclic hydrogen-bonded complexes, C2H4O...HX and C3H6O...HX, where X=F or Cl, were determined at DFT/B3LYP/6-311++G(d,p) computational level. Structural, electronic and vibrational properties of these complexes are used in order to compare the strained ring, which confer the great reactivity of these heterocyclic rings with monoprotic acids, forming a primary hydrogen bond. A secondary hydrogen bond between the hydrogen atoms of the CH2 groups and the halide species also takes place, thus causing a nonlinearity (characterized by the theta angle), in the primary hydrogen bond.     

Treatment of hydrogen bonding within CNDO/2 and MINDO/3: CNDO/2H and MINDO/3H

A formalism has been developed to treat hydrogen-bonded A—H…?B systems within the CNDO /2 and the MINDO /3 methodologies. In this formalism the interactions are divided into three distinct classes; those between (a) two hydrogen-bonded atoms, (b) one hydrogen-bonded and non-hydrogen-bonded atom, and (c) two non-hydrogen-bonded atoms. The last class of interactions is treated solely by the existing CNDO /2 or MINDO /3 method. For A –H…?B systems, the core resonance integrals are individually parametrized depending upon the class of the interaction. Three types of A—H…?B systems have been thus far parametrized. Nine hydrogen-bonded dimers have been studied using the new formalism and the current CNDO /2 and the MINDO /3 methods. MINDO /3 predicts very large interatomic (A –B) distances for the equilibrium geometry, and relatively small stabilization values for the hydrogen-bond energies. CNDO/2 predicts the reverse. The new formalism for both CNDO /2 and MINDO /3 predicts accurate geometries as well as energies for all nine dimers. The new formalisms are called CNDO /2H and MINDO /3H. A general discussion of the nature of hydrogen bonding as exhibited by CNDO /2H and MINDO /3H is presented.     

T-型氢键液晶复合物的制备与液晶行为

以不具有液晶行为的2,6-二[N,N′-二-(4-烷基苯甲酰基)]氨基吡啶(A系列)和4-正烷氧基苯甲酸(D系列)作为氢键液晶复合物的单体,组装成T-型氢键液晶系列复合物(AmDn)。用红外光谱对其结构进行了表征,用DSC及偏光显微方法对其液晶行为进行了研究。结果表明:所合成的21种复合物分子间存在氢键且都具有向列相。通过调整2,6-二[N,N′-二-(4-烷基苯甲酰基)]氨基吡啶分子上柔性烷基的长度和极性,可以有效地调节它与4-烷氧基苯甲酸形成的氢键复合物的液晶相变温度以及液晶态的稳定性;增加2,6-二[N,N′-二-(4-烷基苯甲酰基)]氨基吡啶分子上柔性烷基的长度,其复合物AmDn的液晶相温度范围趋于变窄,清亮点逐渐下降,其液晶态稳定性也逐渐下降;以2,6-二[N,N′-二-(4-烷基苯甲酰基)]氨基吡啶分子替代2,6-二[N,N′-二-(4-烷氧基苯甲酰基)]氨基吡啶分子,可以降低分子的极性,使其单体的熔点及其氢键复合物AmDn的相变温度下降。     

Hydrogen-bond structure and dynamics at the interface between water and carboxylic acid-functionalized self-assembled monolayers

Molecular dynamics computer simulations are used to study hydrogen-bond structure and dynamics at the interface between water and carboxylic acid-functionalized self-assembled monolayers (CAFSAMs). Water-water, water-CAFSAM, and internal CAFSAM hydrogen bonds are examined. Roughly half of all adjacent carboxylic acid-terminated hydrocarbon chains are hydrogen-bonded to one another. This is consistent with experimental results reflecting two pKa values for CAFSAMs. Hydrogen-bond dynamics are expressed in terms of hydrogen-bond population autocorrelation functions and are found to be nonexponential. The water-water hydrogen-bond dynamics are slower at the interface than in the bulk, which is similar to what was found at the interface between water and weakly polar liquids such as nitrobenzene. The water-CAFSAM hydrogen bonds are found to be long-lived, on the order of tens of picoseconds. Internal CAFSAM chain-chain hydrogen bonds show almost no relaxation on the simulation time scale.     

The hydrogen-bond network in propylene-glycol studied by Raman spectroscopy

In the present work, we report a polarized Raman study versus temperature of the complex O–H stretching vibrational band (3800–3000 cm⁻¹) performed in a glass forming liquid, namely propylene-glycol (PG), with chemical formula given by H[OCH(CH₃)CH₂]OH. The spectra were collected in bulk and confined state within a sol–gel controlled porous glass having highly interconnected 25 Å diameter pores and characterized by a huge number of silanol groups (Si–OH), able to interact with PG molecules via hydrogen bond. The goal was to investigate how the hydrophilic nature of the surface influenced the molecular mobility of this hydrogen-bonded system, by monitoring intra- and inter-molecular host–host and host–guest interactions. The analysed O–H spectral region was decomposed into Gaussian symmetrical profiles, each of them associated to a well-defined aggregate, triggered by the presence of H-bond. Passing from the bulk state to the confined one, a clear change of the dynamical properties has been revealed and related to the interactions with the surface. The observed results were discussed on the basis of current models for associated liquids.     

A mechanism for water splitting and hydrogen absorbing functions of metal–oxide layered hydrogen storage materials studied by means of ion beam analysis

This review describes a study of catalytic functions of water splitting at the surface and hydrogen gas emitting from the bulk of metal–oxide layered materials as well as hydrogen storage materials as its application by means of the ion beam analysis techniques. First are described a microscopic model for water splitting at the oxide surface and mass balance equations for hydrogen atoms in the bulk. The latter is a mathematical expression of a one‐way diffusion model proposed for an anomalous isotope effect in D–H and H–D replacements of both deuterium (D) implanted into perovskite oxide ceramics by protium (H) in H₂O vapour and the vise versa. The latter model brings about finding of catalytic functions of water splitting at the surface and hydrogen gas emitting from the bulk. Second, experimental results on the anomalous isotope effect are presented and the D–H replacement rates are described in detail. Subsequently are shown results on H₂ gas emission measured with a Bach method, which give a clear evidence for the water splitting and hydrogen gas emitting catalytic functions of the oxide surface. Finally, we present experimental data on the hydrogen absorption and emission characteristics of the metal–oxide layered hydrogen storage materials as an application of the water splitting and hydrogen absorbing catalysts. Copyright © 2014 John Wiley & Sons, Ltd.