Convergent synthesis of oligomers of triazole-linked DNA analogue (DNA) in solution phase

A convergent route for the solution-phase synthesis of oligomeric triazole-linked analogues of DNA (^TLDNA) has been developed. A one-pot procedure for desilylation of masked acetylene and the ensuing copper-catalyzed Huisgen coupling reaction between oligomers allowed the solution-phase synthesis of 7-mer and 8-mer ^TLDNA in good yield.     

Synthetic DNA and Biology (Nobel Lecture)

Most of the significant work has been summarized in a number of reviews and articles. In these there was, of necessity, a good deal of simplification and omission of detail…. With the passage of time, even I find myself accepting such simplified accounts. F Sanger^[1]     

Efficient procedure for the preparation of (vinyl)polystyrene resin

(Vinyl)polystyrene resin is prepared in one step by treatment of Merrifield resin with an excess dimethylsulfonium methylide.     

Efficient synthesis of RGD-containing cyclic peptide-porphyrin conjugates by ring-closing metathesis on solid support

We report the efficient solid-phase synthesis of a new family of peptidic porphyrins containing a constrained RGD moiety obtained by ring-closing metathesis.     

Solid-phase synthesis of 1,5-substituted 2-(N-alkylamino)-imidazolidin-4-ones

The solid-phase synthesis of 1,5-substituted 2-(N-alkylamino)-imidazolidin-4-one from resin-bound amino acid is described. Using a guanidinylating reagent in solution to form the guanidine moiety instead of resin-bound carbodiimide, an N-alkyl substitution is introduced specifically onto the 2-amino position. Combined with an alkylation step of the resin-bound amino acid prior to guanidinylation, all desired substitutions of the final products are achieved without racemization at chiral centers. This reaction sequence is also compatible with a variety of protected amino acid side chains.     

Synthesis and structures of deoxyribonucleoside analogues for triazole-linked DNA (DNA)

Deoxyribonucleoside analogues bearing acetylene group at the pseudo-5′-position and azido group at the pseudo-3′-position have been synthesized by transglycosylation reaction of deoxythymidine analogue with adenine, cytosine, and guanine nucleobases as nucleophiles. The structures of analogues were studied in crystalline state by X-ray crystallography as well as in solution phase by NMR spectroscopy and showed the puckering conformations similar to the natural congeners.     

Efficient and selective solid-phase synthesis of trans 3-alkyl β-lactams from nonactivated acid chlorides

An efficient and stereoselective procedure for a rapid access to diverse trans 3-alkyl β-lactams by solid-phase methodology is described.     

Highly efficient synthesis of sialylglycopeptides overcoming unexpected aspartimide formation during activation of Fmoc-Asn(undecadisialyloligosaccharide)-OH

Oligosaccharyl Fmoc-asparagine in which amide nitrogen of the asparagine side chain attached to the anomeric position at the reducing end, is a versatile building block and has been used for various glycopeptide synthesis using Fmoc solid-phase peptide synthesis (SPPS). We found unexpected aspartimide formation between amide nitrogen at the reducing end and α-carboxyl acid of oligosaccharyl Fmoc-asparagine during activation of α-carboxyl acid and this side reaction resulted in low coupling yields of oligosaccharyl Fmoc-asparagine with peptide-resin. This aspartimide formed efficiently using conventional coupling reagents such as PyBOP and HATU, but DEPBT afforded little of the aspartimide derivative. Activation condition using DEPBT (3.0 equiv) and DIPEA (2.0 equiv) afforded excellent yield (97%) in coupling reaction between Fmoc-Asn(CHO)-OH and peptide-resin. Based on these results, we performed a synthesis of a sialylglycopeptide, HIV-gp120 (54-63) VVLLVN(CHO)VTENF, in high yield.     

Efficient synthesis of (carboranylmethyl)siloxanes from carboranylcopper and chloromethylsiloxanes

A preparative synthesis of (carboranylmethyl)siloxanes from carboranylcopper and chloromethylsiloxanes was developed. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 4, pp. 709–711, April, 1998.     

Solid-phase synthesis of phthalocyanine and tetraazaporphyrin triangular prisms

A solvent-free, solid-phase one-step reaction between tetra-tert-butylated oxotitanium(IV) phthalocyanine and tetraazaporphyrin with 2,3,6,7,10,11-hexahydroxytriphenylene yields novel azaporphyrin cyclic trimers with triangular prismatic orientations. The fluorescence arising from the phthalocyanine and tetraazaporphyrin chromophores is significantly quenched upon trimerization.     

Alteration of the selectivity of hybridization of immobilized oligonucleotide probes by co-immobilization with charged oligomers of ethylene glycol

A significant challenge exists in the creation of an environment for immobilized probe oligonucleotides that offer good structural regularity and reproducibility, where nearest neighbour interactions provide for control of selectivity, yet where the degree of hybridization does not alter nearest neighbour interactions. This new work explores whether a “matrix isolation” method will produce the desired environment for the probe molecules. The DNA oligonucleotide probes are polyelectrolytes with charged backbones and significant flexibility. It is possible to isolate the probe molecules by surrounding each, on average, with a sheath of immobilized oligomer that is not based on complementary nucleic acid, yet that is a polyelectrolyte in order to control the surface density and charge within the mixed film. Preliminary work investigates a mixture of dT₂₀ as the probe oligonucleotide, and a 20-mer oligomer primarily containing ethylene glycol phosphate, as a matrix isolation material in a 1:20 mole ratio, respectively. Melt temperature (T_m) measurements indicate that the thermodynamic stability of the probe molecules can be adjusted using the oligomer matrix to achieve lower T_m values by up to 5 °C, with full retention of selectivity for discrimination of single base pair mismatches even under conditions where the probes at a surface are saturated with complementary target.     

3-Nitro-l,2,4-triazol-l-yl-tris(pyrrolidin-1-yl)phosphonium hexafluorophosphate (PyNTP) as a condensing reagent for solid-phase peptide synthesis

Solid-phase oligopeptide synthesis has been well developed and most short oligopeptides can now be easily synthesized. However, when a desired oligopeptide forms a secondary structure or includes less reactive amino acids such as aminoisobutyric acid, its terminal amino groups become less reactive and synthesis of the desired oligopeptides becomes difficult. To expand the number of synthetic peptide sequences, we have developed efficient coupling conditions using 3-nitro-l,2,4-triazol-l-yl-tris(pyrrolidin-1-yl)phosphonium hexafluorophosphate (PyNTP) as a highly reactive condensing reagent on an unswellable solid support. PyNTP demonstrated higher reactivity than conventional condensing reagents and the optical purity of the synthesized oligopeptides was sufficiently high for application to general oligopeptide synthesis.     

One-pot synthesis of triazole-linked glycoconjugates

Highly efficient one-pot synthesis of 1,2,3-triazole-linked glycoconjugates was presented involving a Cu(I) catalyzed 1,3-dipolar cycloaddition as the key step. It offers a convenient route to prepare neoglycoconjugates derived from unprotected saccharides or peracetylated saccharides.     

Rapid and convenient semi-automated microwave-assisted solid-phase synthesis of arylopeptoids

A facile and expedient route to the synthesis of arylopeptoid oligomers (N-alkylated aminomethyl benz-amides) using semi-automated microwave-assisted solid-phase synthesis is presented. The synthesis was optimized for the incorporation of side chains derived from sterically hindered or unreactive amines and both ortho- and para-substituted arylo-backbones. By utilizing this optimized protocol a complex nonameric arylopeptoid was synthesized in less than 11 h, featuring a novel alternating ortho-, meta-, and para-substituted backbone pattern and a variety of chemically diverse and challenging side chains.     

Efficient preparation and properties of triazole-linked corannulene derivatives

In this study, we explore the potential of copper(I)-catalyzed cycloaddition reaction between azides and terminal alkynes to prepare corannulene-rich materials. For this purpose, a practical route is established to yield corannulene-based azide building blocks. The newly prepared corannulene-azides are then coupled with known corannulene-alkynes. The chemical yields of the dimerization reactions ranged from 80 to 90%. In this way, a number of triazole-linked corannulene derivatives varying in the geometry, length, and the triazole-content are prepared. These results suggest that alkyne–azide click reaction can serve as a useful synthetic tool in the preparation of corannulene-rich discrete oligomers as well as polymers.     

Solid-phase synthesis of 4H-2-(3-hydroxy-4-methoxyphenyl)-naphtho[1,2-b]pyran-1-one

An effective solid-phase preparation of the pharmaceutically interesting 4H-2-(3-hydroxy-4-methoxyphenyl)-naphtho[1,2-b]pyran-1-one system from an anchored bisarylacetylene is described.