X-ray and neutron diffraction studies of the crystal and molecular structure of the predominant monocarboxylic acid obtained by mild acid hydrolysis of cyanocobalamin. Part III. Neutron diffraction studies of wet crystals

The molecular structure of the predominant monocarboxylic acid, E2, obtained by mild acid hydrolysis of cyanocobalamin has been determined by neutron diffraction with some support from x-ray diffraction. The undried crystals, formula probably C₆₃H₈₇O₁₅N₁₃PCo l6H₂O, have unit cell parametersa = 14.91(1) A, b = 17.49(l)A, c = 16.41(1)A, β = 104.11(5)°; space group P2₁, Z = 2. The analysis was carried out in two stages with data extending to 1.3 A (1531 terms) and to 1.0 A (2993 terms) respectively. It was initiated by the use of coordinates of 84 atoms from the parallel x-ray analysis to phase the first Fourier series. The atomic positions derived from the 1.3 A data set appeared in good agreement with the chemical evidence both on the corrin structure and on the position of the acid group ate. However the analysis by Fourier and least squares methods on the extended data defined the atomic positions much more clearly and showed that diffraction ripples had distorted some of the hydrogen atom positions in the low resolution map. The acid group appeared clearly placed in the higher resolution map at theb position. The positions of disordered atoms in thee chain and some water molecules were checked with the parallel x-ray analysis. It seems most likely to us therefore that this acid is α-(5,6-dimethylbenzimidazolyl)cobamic acida,c,d,g,e pentamide cyanide.     

X-ray and neutron diffraction studies of the crystal and molecular structure of the predominant monocarboxylic acid obtained by mild acid hydrolysis of cyanocobalamin. Part II. X-ray diffraction studies of wet crystals

The crystal and molecular structure of wet crystals of the O-monocarboxylic acid of cyanocobalamin has been determined. The molecule crystallizes in a monoclinic cell ofa = 14.845,b = 17.435,c = 16.243 A, β = 103.54°, space group P2₁,. Intensity data were collected by diffractometry and the structure solved by Patterson and Fourier methods. Refinement, initially by a least-squares process and latterly by Fourier methods, led to anR of 0.140. Disordered sites were found for the terminal atoms of side chaine; the identification of the acid grouping was not made with certainty. Sites for sixteen water molecules were determined.     

Hydrophobic Vitamin B12. X. Steric Effect in Electrochemical Carbon-Skeleton Rearrangement Catalyzed by Hydrophobic Vitamin B12 in Nonaqueous Media

Abstract

A steric effect in the carbon-skeleton rearrangement catalyzed by heptamethyl cobyrinate perchlorate, [Cob(II)7C₁ester]C10₄, was investigated under electrochemical conditions. The controlled-potential electrolyses of alkyl halides having two carboxylic ester groups of different bulkiness on the same carbon atom, such as 2,2-bis(ethoxycarbonyl)-l-bromopropane, l-bromo-2-tert-butoxycarbonyl-2-ethoxy-carbonylpropane, l-bromo-2-cyclohexyloxycarbonyl-2-ethoxycarbonylpropane, and l-bromo-2-ethoxy-carbonyl-2-phenoxycarbonylpropane, were carried out in N,N-dimethylformamide, as catalyzed by [Cob(II)7C₁ester]CIO₄, to give the corresponding ester-migrated products in the dark at—1.5 V vs SCE in the presence of acetic acid and at—2.0 V vs SCE without acetic acid. As regards a correlation between bulkiness of an ester group and a migration aptitude, a smaller ester group tends to migrate to the adjacent carbon atom more readily than a larger one. The origin of such a steric effect is discussed with attention to the rate-determining step.     

Thermal and X-ray diffraction studies of the solid–solid interactions in CuO–MoO3/MgO system

The solid–solid interactions in pure and MoO₃-doped CuO/MgO system were investigated using TG, DTA and XRD. The composition of pure mixed solids were 0.1CuO/MgO, 0.2CuO/MgO and 0.3CuO/MgO and the concentrations of MoO₃ were 2.5 and 5 mol%. These solids were prepared by wet impregnation of finely powdered basic magnesium carbonate with solutions containing calculated amounts of copper nitrate and ammonium molybdate followed by heating at 400–1000°C. The results revealed that ammonium molybdate doping of the system investigated enhanced the thermal decomposition of copper nitrate and magnesium hydroxide which decomposed at temperatures lower than those observed in case of the undoped mixed solids by 70 and 100°C, respectively. A portion of CuO present dissolved in the lattice of MgO forming CuO–MgO solid solution with subsequent limited increase in its lattice parameter. The other portion interacted readily with a portion of MoO₃ at temperatures starting from 400°C yielding CuMoO₄ which remained stable up to 1000°C. The other portion of MoO₃ interacted with MgO producing MgMoO₄ at temperatures starting from 400°C and remained also stable at 1000°C. The diffraction peaks of Cu₂MgO₃ phase were detected in the diffractograms of pure and MoO₃-doped 0.3CuO/MgO precalcined at 1000°C. The formation of this phase was accompanied by an endothermic peak at 930°C.     

SYNTHESIS AND CRYSTALLOGRAPHIC CHARACTERIZATION OF [Eu(C18H18N6)(OAc)2 +][Cl−] · 7H2O,A TEN-COORDINATE Eu(III) COMPLEX WITH A CLOSE-TO-PLANAR HEXADENTATE C18H18N6 LIGAND: AN INTERESTING CASE OF A STRUCTURE WITH MULTIPLE DISORDER PROBLEMS

Abstract

The title compound crystallizes in the centrosymmetric triclinic space group Pl (No. 2) with a = 8.7080(18) Å, b = 9.2777(14) Å, c = 10.2707(22) Å, α = 77.762(14)°, β = 77.482(17)°, γ = 84.735(15)°, V = 790.7(3) ų and Z = 1. The structure was solved and refined to R = 2.37% and wR = 3.19% for all 2073 independent reflections. The structure is disordered, with overlapping images of two enantiomeric [Eu(C₁₈H₁₈N₆)(OAc)⁺ ₂] ions surrounding an inversion center on which lies a Eu(III) cation. These two images correspond to isomers with λλ and ΔΔ conformations of their N-CH₂—CH₂—N moieties. The ten-coordinate europium(III) cation has a staggered 2:6:2 coordination geometry, with six equatorial Eu-N bonds to the hexadentate macrocyclic ligand and two quasi-axial Eu-O bonds to each of the two bidentate acetate ligands. Further manifestations of disorder occur for the acetate ligands and for H₂O/CI^? sites in the crystal lattice.     

Synthesis,characterization and luminescence of the tetranuclear gold cluster: [Au4{7,8-(PPh2)2-7,8-C2B9H10}2(PPh3)2]

A tetranuclear gold cluster has been synthesized by the reaction of [Au(PPh₃)NO₃] with the closo carborane diphosphine 1,2-(PPh₂)₂-1,2-C₂B₁₀H₁₀ in THF, and characterized by elemental analysis, FT-IR, ¹H and ¹³C?NMR spectroscopy and X-ray structure determination. The cluster crystallizes in the triclinic Pī, a?=?15.118(8)?Å, b?=?16.057(9)?Å, c?=?24.284(13)?Å, α?=?80.822(9)°, β?=?79.624(8)°, γ?=?81.938(8)°, Z?=?2, R ₁?=?0.0626, wR ₂?=?0.1894. A single crystal structure determination showed that four gold atoms form a tetrahedral framework. Among these four gold atoms, two were chelated by two nido carborane diphosphine [7,8-(PPh₂)₂-7,8-C₂B₉H₁₀]^? anions coming from the degradation of the initial closo ligand 1,2-(PPh₂)₂-1,2-C₂B₁₀H₁₀, while the other two were ligated to two PPh₃ groups. The luminescence of this cluster was also investigated in dichloromethane solution at room temperature.     

Synthesis and Characterization of Hyperbranched Polyesters Based on Isophthalic Acid and Trimethylolpropane

Hydroxyl-terminated hyperbranched polyesters (HBPEs) with aromatic/aliphatic structure were synthesized at three different monomer mole ratios (A₂/B₃=1, 0.9, and 0.6, respectively) by melt polycondensation of isophthalic acid and trimethylolpropane via A₂+ B₃ approach. Fourier transform infrared (FTIR) spectroscopy indicated that the expected HBPEs, which showed excellent solubility in a variety of polar solvents such as N, N-dimethyl formamide (DMF), N-methyl-2-pyrrolidone (NMP), dimethyl sulfoxide (DMSO), and terahydrofuran (THF), were produced without gelation during the polymerization. The weight-average molecular weight of HBPEs ranged from 7014 to 8306 and their inherent viscosities were varied from 0.17 to 0.34 dL/g. The degree of branching of the HBPEs was estimated to be 0.39–0.49 by¹H-NMR and ¹³C-NMR measurement. Their glass transition temperature measured by differential scanning calorimetry (DSC) was between 64 and 86°C. The thermogravimetric analysis (TGA) measurement revealed that HBPEs had ca 8.5% weight-loss at 300°C in N₂.     

Hydrothermal synthesis,characterization, and luminescence of two new arsenic–vanadium compounds with a γ-[As8V14O42(H2O)]4− anion

Two new compounds, [Zn(phen)₃]₂[γ-As₈V₁₄O₄₂(H₂O)]?·?4H₂O (1) and [Cd(phen)₃]₂[γ-As₈V₁₄O₄₂(H₂O)]?·?2H₂O (2) (phen?=?1,10′-phenanthroline), have been hydrothermally synthesized and structurally characterized by single-crystal X-ray diffraction, infrared spectrum, and thermogravimetric analysis. Compound 1 crystallizes in the triclinic space group P 1 with a?=?11.429(4)?Å, b?=?15.760(5)?Å, c?=?15.952(5)?Å, α?=?108.825(5)°, β?=?92.194(5)°, γ?=?104.155(5)°, V?=?2615.6(15)?ų, Z?=?1; 2 crystallizes in the triclinic space group P 1 with a?=?11.450(4)?Å, b?=?15.629(6)?Å, c?=?16.302(6)?Å, α?=?109.177(5)°, β?=?92.628(5)°, γ?=?104.251(4)°, V?=?2644.8(17)?ų, Z?=?1. Single-crystal structural analysis shows that both 1 and 2 consist of a new type of [γ-As₈V₁₄O₄₂(H₂O)]^4? cluster anion.     

Synthesis and structural characterization of a new polymeric zinc(II) complex with thiophene-2-carboxylic acid

A new polymeric zinc(II) complex with thiophene-2-carboxylic acid (α-tpc) of composition [Zn₂(C₂₀H₁₂O₈S₄)] _n was obtained and structurally characterized by X-ray diffraction, thermal analysis, nuclear magnetic resonance (NMR), and infrared spectroscopies. Upfield shift in the ¹H-NMR spectrum is explained by the crystalline structure, which shows the thiophene rings overlapping each other in parallel pairs. The compound crystallizes in the monoclinic system, space group P2₁/c, with a = 9.7074(4) Å, b = 13.5227(3) Å, c = 18.9735(7) Å, β = 95.797(10)°, and Z = 4. Three α-tpc groups bridge between two Zn(II) ions through oxygens and the fourth one bridges between one of these ions and the third one, symmetry related by a twofold screw axis. This arrangement gives rise to infinite chains along the crystallographic a direction. The metal atoms display an approximate tetrahedral configuration. The complex is insoluble in water, ethanol, and acetone, but soluble in dimethyl sulfoxide.     

Partial Synthesis of CoαCoβ-Dicyano-176-Norcobinamide

Summary. Recent interest in norvitamin B₁₂-derivatives, homologues of complete vitamin B₁₂-derivatives, lacking the methyl group at carbon 176, stems from the identification of the corrinoid cofactor of the tetrachloroethene reductive dehalogenase of Sulfurospirillum multivorans as 176-nor-pseudovitamin B₁₂. Here we report the partial synthesis of the corrinoid Co_αCo_β-dicyano-176-norcobinamide by condensation of cobyric acid and 2-aminoethanol. In addition, the partial synthesis of crystalline Co_α-aquo-Co_β-cyanocobyric acid by acid catalyzed hydrolysis of vitamin B₁₂ is detailed, improving the method and the isolation procedure worked out earlier by Bernhauer et al. The solution structure of Co_αCo_β-dicyano-176-norcobinamide was studied by spectroscopy and was compared with that of the homologue Co_αCo_β-dicyanocobinamide. The title compound, Co_αCo_β-dicyano-176-norcobinamide, represents the dicyano-form of a potential biosynthetic precursor of the 176-nor-B₁₂-derivatives, such as 176-nor-pseudovitamin B₁₂.     

Preparation of HPEEK by Oligomer A2+B3 Approach

A series of hyperbranched poly(ether ether ketones) with different chain length between branching point (L) were prepared using a A₂+B₃ methodology, in which the A₂ is hydroxyl‐terminated PEEK oligomer. The L affects the properties of the polymers such as the inherent viscosity, the degree of crystallinity, the thermal properties of the polymers etc. The polymer with a L₂≈8 had T _g (122.4°C), T _c (200.2°C), and broad T _m (247.4°C). With the increment of L, up to the point L₂≈20 and L₂≈35, the polymers become semi‐crystalline, with a melting point of 300.9°C and 317.9°C, respectively. Their wide angle X‐ray scattering (WAXS) pattern indicated that their crystal structure is exactly the same as that of the linear homopolymer.     

Syntheses,structural determination,and binding studies of nine-coordinate multinuclear (mnH)2[EuIII(egta)]2·6H2O and binuclear (mnH)4[EuIII2(dtpa)2]·6H2O

Two lanthanide complexes, (mnH)₂[Eu^III(egta)]₂·6H₂O (1) (H₄egta = ethyleneglycol-bis-(2aminoethylether)-N,N,N′,N′-tetraacetic acid) and (mnH)₄[Eu^III₂(dtpa)₂]·6H₂O (2) (H₅dtpa = diethylenetriamine-N,N,N′,N″,N″-pentaacetic acid), have been synthesized and characterized by FT-IR spectroscopy, thermal analysis, and single-crystal X-ray diffraction. X-ray diffraction reveals that 1 is multinuclear nine-coordinate and crystallizes in the monoclinic crystal system with space group C2/c. The obtained cell dimensions are a = 38.513(3)?Å, b = 13.5877(8)?Å, c = 8.7051(5)?Å, β = 99.6780(10)°, and 4490.6(5)?ų. Each methylamine (mnH⁺) cation in 1, through hydrogen bonds, connects three adjacent [Eu^III(egta)]^? anions. The [Eu^III(egta)]^? anions connect one another forming a 1-D multinuclear zigzag chain structure along the c-axis. Complex 2 is nine-coordinate binuclear structure with tricapped trigonal prismatic conformation and crystallizing in the monoclinic crystal system, but with space group P2₁/n. The obtained cell dimensions are a = 9.9132(8)?Å, b = 24.1027(18)?Å, c = 10.7120(10)?Å, β = 109.1220(10)°, and 2418.2(3)?ų. For 2, there are two kinds of methylamine cations (mnH⁺) connecting [Eu^III₂(dtpa)₂]^4? complex anions and lattice waters through hydrogen bonds, leading to formation of a 2-D ladder-like layer structure.     

两种3D微孔Zn-MOF对水溶液中Fe3+、Cr2O72-和丙酮分子的荧光传感(英文)

通过溶剂热法合成了2种三维微孔锌金属有机框架材料,其分子式为[Zn₃(DBA)(OH)(1,10-phen)₂]_n (1)和{[Zn₂(HDBA)(4,4′-bipy)_1.5]·H₂O}_n (2)(H₅DBA=3,5-二(2′,4′-对羧基苯基)苯甲酸;1,10-phen=1,10-菲咯啉;4,4′-bipy=4,4′-联吡啶)。结构分析表明,配合物1为三核锌基金属单元的三维微孔骨架,配合物2为双核锌基的微孔结构。与2相比,配合物1在水中具有较强的发光性能,可作为检测Fe³⁺、Cr₂O₇^2-和丙酮分子的发光传感器,具有较高的选择性和灵敏度。     

Synthesis and crystal structure of inclusion compounds: Trans-9,10-dihydro-9,10-ethanoanthracene-11,12-dicarboxylic acid with boric acid and tetrabutylammonium salt

Two new inclusion compounds (n-C₄H₉)₄N⁺C₁₈-H₁₃O₄ ⁻·B(OH)₃ (1) and (n-C₄H₉)₄N⁺C₁₈H₁₃O₄ ⁻ (2) were prepared and characterized by X-ray crystallography. Crystal data: compound 1, monoclinic P2(1)/c, a = 1.569 9(1) nm, b = 0.995 5(6) nm, c = 2.293 3(1) nm, β = 109.962(3)°, Z = 4, and R ₁ = 0.0434, wR = 0.075 9; compound 2, monoclinic C2/c, a = 1.400 5(3) nm, b = 1,282 1(2) nm, c = 1.765 7(3) nm, β = 100.388(1)°, Z = 4, and R ₁ = 0.0584, wR = 0.096 6. In the crystal structure of 1, the tetramers formed by two trans-9,10-dihydro-9,10-ethanoanthracene-11,12-dicarboxylic acid (EADA) anions and two boric acid molecules were connected through O—H⋯O hydrogen bonds to generate a channel type host lattice. The tetra-n-butylammonium cations were stacked to give two columns within each channel with cross-sectional size of about 2.30 nm × 0.93 nm. In the crystal structure of 2, similar honeycomb host lattices with big size were also formed along the [101] direction by three-dimensional accumulation of EADA anions. The tetra-n-butylammonium cations were accommodated in a zigzag fashion within each channel. Translated from Acta Chimica Sinica, 2006, 64(18): 1904–1910 [译自: 化学学报]     

Crystal structures of 4-(oxiran-2-ylmethoxy) benzoic acid and 4-acetoxybenzoic acid

Compounds 4-(oxiran-2-ylmethoxy)benzoic acid (2) and 4-acetoxybenzoic acid (4) are synthesized by a new synthetic route and studied by X-ray crystallography. Compound 2 crystallizes in the monoclinic system, P2₁/n space group, a = 5.1209(2) ?, b = 30.3429(16) ?, c = 5.9153(3) ?, β = 96.725(3)°, V = 912.81(8) ?³, Z = 4. Compound 4 crystallizes in the triclinic system, P-1 space group, a = 7.3400(4) ?, b = 8.0819(3) ?, c = 15.6548(9) ?, α = 85.754(3)°, β = 84.268(2)°, γ = 70.023(3)°, V = 867.63(8) ?³, Z = 4. The crystal structure of 2 comprises two crystallographically independent molecules of the compound. In the crystal structures of 2 and 4, pairs of molecules form carboxyl dimers.     

Molecular and crystal structure of 23,24,25,26,27,29,30-heptamethyl-19,28-oxahexacyclo[15.13.18.017,18.013,14.08,9.05,10]tetracos-3-yl acetate

The molecular structure of 23,24,25,26,27,29,30-heptamethyl-19,28-oxahexacyclo[15.13.18.0^17,18.0^13,14.0^8,9.0^5,10]tetracos-3-yl acetate III. Compound III C₃₂H₅₂O₃ crystallizes in the monoclinic crystal system with the unit cell parameters a = 13.265(15) ?, b = 6.481(7) ?, c = 32.274(4) ?, β = 99.333(2)°, space group C2, Z = 4, d = 1.176 g/cm³. Original Russian Text Copyright ? 2009 by N. I. Medvedeva, O. B. Flechter, and A. A. Korlyukov __________ Translated from Zhurnal Strukturnoi Khimii, Vol. 50, No. 2, pp. 399–401, March–April, 2009.     

Spectroscopic studies and X-ray crystal structures of charge-transfer complexes of 1,4,7-trithiacyclononane with diiodine

1,4,7-Trithiacyclononane ([9]aneS₃) reacts with molecular diiodine in CH₂Cl₂ to form a 1:1 adduct. The formation constant and the thermodynamic parameters of this adduct have been determined by UV-visible spectra of several solutions at the temperatures of 15, 20, 25, 30, and 35°C. The ¹³C NMR spectra show that adducts with higher ligand/diiodine molar ratios are formed. Two neutral charge-transfer molecular compounds having formula 2[9]aneS₃ · 4I₂ ( I ) and [9]aneS₃ · 3I₂ · ( II ) have been obtained as crystals. The crystals of I are triclinic (a = 8.498(2) Å, b = 13.984(4) Å, c = 14.898(6) Å, α = 65.57(2)°, γ = 89.19(2)°, γ = 81.26(2)°, Z = 2, space group P1; R = 0.025) and contain units formed by two [9]aneS₃ molecules connected by a diiodine molecule; one [9]aneS₃ binds two other diiodine molecules, while the second binds only one other diiodine molecule. The crystals of II are monoclinic (a = 13.810(2) Å, b = 9.829(4) Å, c = 16.198(6) Å, β = 113.41(2)°, Z = 4, space group P2₁/c; R = 0.019) and contain molecules of [9]aneS₃ binding three diiodine molecules. FT-Raman spectra in the characteristic v(I–I) region, carried out on the solid adducts, are discussed in comparison with the structural parameters.     

X-ray diffraction studies of diisotactic polymers of cis- and trans-2-butene oxides

Crystalline polymers derived from cis- and trans-2-butene oxides were studied by x-ray diffraction methods. X-ray fiber and powder photographs of poly(trans-2-butene oxide) were indexed by an orthorhombic unit cell with the dimensions a = 13.72 A., b = 4.60 A., and c (chain axis) = 6.90 A.; the space group is P2₁2₁2₁. The crystal structure of this polymer has been determined in projection. The chain has an erythro-diisotactic structure with -dl, dl- carbon sequences. The polymer has a nonplanar zigzag backbone with carbon and oxygen atoms of alternate monomer units lying nearly in a plane. Two chain molecules pass through the unit cell. The unit cell of poly(cis-2-butene oxide) is orthorhombic with lattice constants a = 11.20 A., b = 10.44 A., c (chain axis) = 7.01 A. The polymer has a threo-diisotactic structure with -dd,dd- or -ll,ll- carbon sequences. Four chain molecules pass through the unit cell. The crystal lattice is body-centered but the space group has not yet been established. The polymer has an almost fully extended zigzag chain configuration. Polymers prepared by either metal halide catalysts (FeCl₃, SnCl₄) or organometallic catalysts were essentially identical; the latter catalysts did, however, yield more highly crystalline polymers.     

A cocrystal of caffeine and dipicolinic acid: synthesis, characterization, X-ray crystallography, and solution studies

A reaction between caffeine (caff) and dipicolinic acid = 2,6-pyridine dicarboxylic acid (pydc.H₂) in water results in the formation of a cocrystal compound (pydc.H₂.H₂O)(caff) 1. The characterization of the resulting crystallohydrate is performed using ¹H, ¹³C NMR and IR spectroscopy and X-ray crystallography. X-ray crystal structure analysis reveals the presence of both starting materials and water in the lattice. It also indicates intensive intermolecular H bonding interactions between carboxylic acid, caffeine, and water as well as π-π stacking between the pydc.H₂ and caff rings as constituents of the cocrystal. The hydrogen bonding and non-covalent interactions play roles in the formation of the cocrystal. The crystal system is triclinic with the space group P-1 and two formula units per unit cell. The unit cell parameters are a = 6.906(2) Å, b = 8.451(3) Å, c = 14.68 (4) Å with α = 81.51(3)°, β = 78.47(3)°, and γ = 78.14(3)°. The final R value is 0.0660 for 7943 measured reflections.     

Molecular and crystal structure of nido-9-C5H5N-11-I-7, 8-C2B9H10: Supramolecular architecture based on hydrogen bonds X-H⋯I (X = B, C)

A single crystal X-ray diffraction study of a new iodine-containing cluster compound 9-(pyridine)-11-iodo-decahydro-7,8-dicarba-nido-undecaborane [9-C₅H₅N-11-I-7,8-C₂B₉H₁₀] has been performed. Crystal data: C₇H₁₅B₉NI, M = 337.39, monoclinic, space group P2₁/c, unit cell parameters: a = 9.348(1) Å, b = 11.159(1) Å, c = 13.442(2) Å, β = 98.13(1)°, V = 1388.1(5) ų, Z = 4, d _calc = 1.614 g/cm³, T = 295 K, F(000) = 648, μ = 2.276 mm^?1. The structure was solved by a direct method and refined in the full-matrix anisotropic approximation (isotropic for hydrogen atoms) to final agreement factors R ₁ = 0.0254, wR ₂ = 0.0454 for 2437 I _hkl ≥ 2σ_I from 3590 measured I _hkl (an Enraf-Nonius CAD-4 diffractometer, λMoK _α , graphite monochromator, θ/2θ-scanning). The molecules are joined into a supramolecular assembly by hydrogen bonds X-H?I (X = B, C).