Theoretical investigation on conformational preferences and structural properties of 2-lithio-1,3-diphosphinane and 2-lithio-1,3-dimethyl-1,3-diphosphinane

A new family of dialphosphacyclohexane is introduced which has three nucleophilic centers. The conformational stabilities and structural properties of 2-lithio-1,3-diphosphinane and 2-lithio-1,3-dimethyl-1,3-diphosphinane were investigated computationally by DFT calculations and NBO analyses at B3LYP/6-31+G(d,p). Relative energy trend in 1,3-diphosphinane and 1,3-dimethyl-1,3-diphosphinane conformations explored from steric and hyperconjugative point of view. The stability trend of 2-lithio derivatives based on calculated relative energies in 1,3-diphosphinane is 1d > 1f > 1b > 1a > 1c > 1e and for 1,3-dimethyl-1,3-diphosphinane derivatives is 2f > 2d > 2b > 2a > 2c > 2e. Calculated NBO atomic charges indicate that high positive charge at lithium and small C–Li Wiberg bond indexes in these derivatives are demonstrators of ionic nature of the C–Li bonds. Stereoelectronic interactions, polarizability of phosphorus, and chelate formation between each of phosphorous and lithium are determining factors in stability trend observed in these derivatives. Ease of lithiation in bis(dimethylphosphino)methane, 1,3-diphosphinane, and 1,3-dimethyl-1,3-diphosphinane derivatives was estimated and compared by isodesmic reaction.     

Synthesis of ethyl 3-phenyl-4-(trifluoromethyl)isoxazole-5-carboxylate via regioselective dipolar cycloaddition

Efforts to prepare ethyl 3-phenyl-4-(trifluoromethyl)isoxazole-5-carboxylate (1) by developing a regioselective 1,3-dipolar cycloaddition between phenyl nitrile oxide and various 4,4,4-trifluoromethyl crotonates are described. The substitution at the C2-position of crotonate dipolarophile 4 significantly influenced the regiochemistry and yield of the cycloaddition. Enol and enol ether-based crotonates underwent regioselective cycloadditions with phenyl nitrile oxide to provide 4-trifluoromethyl isoxazoles in good yields.     

Preparation of a boronate-functionalized affinity hybrid monolith for specific capture of glycoproteins

A novel strategy for preparation of a boronate affinity hybrid monolith was developed using a Cu(I)-catalyzed 1,3-dipolar azide–alkyne cycloaddition (CuAAC) reaction of an alkyne–boronate ligand with an azide-functionalized monolithic intermediate. An azide-functionalized hybrid monolith was first synthesized via a single-step procedure to provide reactive sites for click chemistry; then the alkyne–boronate ligands were covalently immobilized on the azide-functionalized hybrid monolith via an in-column CuAAC reaction to form a boronate affinity hybrid monolith under mild conditions. The boronate affinity monolith was characterized and evaluated by means of elemental analysis, Fourier transform infrared spectroscopy, and scanning electron microscopy. The boronate affinity hybrid monolith exhibited excellent specificity toward nucleosides and glycoproteins, which were chosen as test cis-diol-containing compounds under neutral conditions. The binding capacity of the monolith for the glycoprotein ovalbumin was 2.36 mg?·?g^-1 at pH 7.0. The practicability of the boronate affinity hybrid monolithic material was demonstrated by specific capture of the glycoproteins ovalbumin and ovotransferrin from an egg sample.

Radical reaction HCNO + 3NH: a mechanistic study

The complex triplet potential energy surface for the reaction of HCNO with NH is investigated at the G3B3 level using the B3LYP/6-311++G(d,p), and QCISD/6-311++G(d,p) geometries. Various possible isomerization and dissociation pathways are probed. The initial association between HCNO and NH is found to be carbon to nitrogen attack leading to HNCHNO 2a, which can convert to 2b, 2c, and 2d. Subsequently, 1,4-H-shift of 2a to form NCHNOH 3a followed by dissociation to P ₂ (¹HCN + ³HON) is the most feasible pathway. Much less competitively, 2d undergoes successive 1,3-H-shift and C-N cleavage to form HNCNOH 8b, and then to product P ₃ (¹HNC + ³HON), the second feasible pathway. 8b can alternatively isomerize to 8c followed by N–O bond rupture to generate P ₆ (²OH + ²HNCN), the lesser followed feasible pathway. In addition, 2b takes continuously 1,3- and 1,2-H-shift to form NC(H)NHO 6a, then to ONHCNH 7a which can convert to 7b. Eventually, 7b may take C-N bond fission to produce P ₅ (¹HNC + ³HNO), the least feasible pathway. The present paper may be helpful for future experimental identification of the product distributions for the title reaction, and may be helpful to deeply understand the mechanism of the title reaction.     

Theoretical study on the singlet and triplet potential energy surfaces of NH (X3Σ−) + HCNO reaction

Both the singlet and triplet potential energy surfaces (PESs) of the NH (X³Σ^?) + HCNO reaction have been investigated at the BMC-CCSD level based on the UB3LYP/6-311++G(d, p) structures. The results show that the title reaction is more favorable through the singlet potential energy surface than the triplet one. For the singlet potential energy surface of the NH (X³Σ^?) + HCNO reaction, the most feasible association of NH (X³Σ^?) with HCNO is found to be a non-barrier nitrogen-to-carbon attack forming the adduct a (trans-HNCHNO), which can isomerize to the adduct b (cis-HNCHNO). The most feasible channel is that the 1, 3-H shift with N2–H2 and C–N1 bonds cleavage associated with the N1–H2 bond formation of adduct a leads to the product P ₁ (HCN + HNO). Moreover, P ₂ (HNC + HNO) should be the competitive product. The other products, including P ₃ (NH₂ + NCO) and P ₄ (N₂H₂ + CO), are minor products. The product P ₁ can be obtained through two competitive channels Path 1: R → a → P ₁ and Path 3: R → b → d → P ₁ , whereas the product P ₂ can be formed through Path 2: R → b → d → P ₂ . At high temperatures, the nitrogen-to-nitrogen approach may become feasible. For the triplet potential energy surface of the NH (X³Σ^?) + HCNO reaction, the Path 10: R → ³ a → ³ a ₁ → P ₁ should be the most feasible pathway due to the less reaction steps and lower barriers. These conclusions will have impacts on further experimental investigations.     

Synthesis and spectroscopic studies of some new oxazepine derivatives throughout [2+5] cycloaddition reactions (III)

The present work included condensation reactions of o-tolidine with different aromatic aldehydes in absolute ethanol to give Schiff bases (w ₉ –w ₁₂ ) in high yield which, on reaction with maleic and phthalic anhydride by [2+5] cycloaddition reactions in the presence of suitable solvents, give the corresponding [1,3]oxazepine-4,7-dione (w ₉ m–w ₁₂ m) and [1,3]oxazepine-1,5-dione (w ₉ ph–w ₁₂ ph), respectively. The structure of the newly synthesized compounds were monitored by TLC and established on the basis of elemental analysis, FT-IR, and ¹H NMR.     

Ab initio study of mechanism of cycloaddition reaction between H2Ge = Ge: and acetone

The mechanism of the cycloaddition reaction between singlet H₂Ge = Ge: and acetone has been investigated with CCSD(T)//MP2/6-31G* method. From the potential energy profile, it could be predicted that the reaction has two competitive dominant reaction pathways. The reaction rule presented is that the two reactants firstly form a four-membered Ge-heterocyclic ring germylene through the [2 + 2] cycloaddition reaction. Because of the 4p-unoccupied orbital of Ge atom in the four-membered Ge-heterocyclic ring germylene and the π-orbital of acetone forming a π → p donor–acceptor bond, the four-membered Ge-heterocyclic ring germylene further combines with acetone to form an intermediate. Because the Ge atom in intermediate happens sp³ hybridization after transition state, then, intermediate isomerizes to a spiro-Ge-heterocyclic ring compound via a transition state. Simultaneously, the ring strain of the four-membered Ge-heterocyclic ring germylene makes it isomerize to a twisted four-membered ring product.     

Total syntheses of hyacinthacine A2 and 7-deoxycasuarine by cycloaddition to a carbohydrate derived nitrone

Practical syntheses of nitrone 8 by two different approaches from sugars are reported. Its use as a versatile intermediate in highly selective 1,3-dipolar cycloaddition reactions constitutes the key step for novel total syntheses of hyacinthacine A₂ (3) and 7-deoxycasuarine (20) by simple transformations of a common isoxazolidine adduct.     

Hydrogen bond induced chiral symmetry breaking in the crystallization of nickel(II) complexes

A pair of enantiomers formulated as {Δ-cis-[Ni(en)₂OAc][ClO₄]} _n (Δ-1) and {Λ-cis-[Ni(en)₂OAc][ClO₄]} _n (Λ-1) (en = diaminoethane, OAc^? = acetate anion) were obtained when nickel acetate was reacted with diaminoethane and sodium perchlorate in the absence of any chiral source, whereas the reactions of nickel acetate with 1,3-propanediamine and sodium perchlorate only gave a centrosymmetric complex [Ni(1,3-pn)₂OAc][ClO₄] (2) (1,3-pn = 1,3-propanediamine). Single-crystal X-ray diffraction analyses of all three complexes indicated that the central Ni(II) atoms all have a distorted octahedral coordination geometry, being coordinated by four nitrogen atoms of the diamine ligands, plus two oxygen atoms of OAc^?. In complexes Δ-1 and Λ-1, the monomers of {Δ-cis-[Ni(en)₂OAc]}⁺ and {Λ-cis-[Ni(en)₂OAc]}⁺ are connected through intermolecular hydrogen bonds to generate one-dimensional right- and left-handed homochiral helical chains, respectively, while the monomers of [Ni(1,3-pn)₂OAc]⁺ are linked by similar intermolecular hydrogen bonds to form one-dimensional zigzag chains instead of helical chains. The chiral natures of complexes Δ-1 and Λ-1 have been confirmed by circular dichroism spectroscopy.     

Density functional theory study of mechanism of forming a spiro-Ge-heterocyclic ring compound from H2Ge=Ge: and ethene

The mechanism of the cycloaddition reaction between singlet H₂Ge=Ge: and ethene has been investigated by the B3LYP/6-311 ++G** method. From the potential energy profile and change of Gibbs free energy, it could be predict that the reaction has only one dominant reaction pathway at 298 K and 149.825 kPa. The reaction rule presented is that the two reactants first form a four-membered Ge-heterocyclic ring germylene through the [2 + 2] cycloaddition reaction; because of the 4p unoccupied orbital of Ge: atom in the four-membered Ge-heterocyclic ring germylene and the π orbital of ethene forming a π → p donor–acceptor bond, the four-membered Ge-heterocyclic ring germylene further combines with ethene to form an intermediate; and because the Ge: atom in intermediate happens sp³ hybridization after transition state, then the intermediate isomerizes to a spiro-Ge-heterocyclic ring compound via a transition state.     

Ultrasound-assisted rapid and efficient one-pot synthesis of furanyl spirooxindolo and spiroquinoxalinopyrrolizidines by 1,3-dipolar cycloaddition: a green protocol

Efficient synthesis of novel spirooxindolo and spiroquinoxalinopyrrolizidine derivatives was expediently accomplished with regioselectivity via one-pot, three-component 1,3-dipolar cycloaddition using ultrasonication. Chalcones derived from both heteroaryl methyl ketones and furfural were used as dipolarophiles in these reactions. The synthesized compounds were analyzed by ¹H and ¹³C nuclear magnetic resonance (NMR), mass spectrometry, and elemental (CHN) analysis. Single-crystal X-ray diffraction studies of one of the compounds (11d) proved the structure and regiochemistry of the cycloaddition. The ultrasound methodology is clearly advantageous, and the desired products were obtained in moderate to good yield in shorter reaction time compared with conventional heating and fusion methods.     

Complexation of the cesium cation with 1,3-alternate-25,27-bis(1-octyloxy)calix[4]arene-crown-6

From extraction experiments and γ-activity measurements, the extraction constant corresponding to the equilibrium Cs⁺(aq) + I^?(aq) + 1(nb) ? 1·Cs⁺(nb) + I^?(nb) taking place in the two–phase water–nitrobenzene system (1 = 1,3-alternate-25,27-bis(1-octyloxy)calix[4]arene-crown-6; aq = aqueous phase, nb = nitrobenzene phase) was evaluated as log K _ex (1·Cs⁺, I^?) = 2.9 ± 0.1. Further, the stability constant of the 1·Cs⁺ complex in nitrobenzene saturated with water was calculated for a temperature of 25 °C: log β_nb (1·Cs⁺) = 8.8 ± 0.1. Finally, by using quantum–mechanical DFT calculations, the most probable structure of the resulting cationic complex species 1·Cs⁺ was derived.     

Efficient synthesis of isoxazoles and isoxazolines from aldoximes using Magtrieve (CrO2)

Treatment of aldoximes 1 with Magtrieve^™ (CrO₂) in presence of dipolarophile 3 or 4, furnished a variety of isoxazolines 5a-u and isoxazoles 6a-q as 1,3-dipolar cycloaddition (1,3-DC) products (38 examples; 63-90% isolated yields). In situ formation of a nitrile oxide intermediate was confirmed through isolation of the dimerization product furoxane 2a in absence of any dipolarophile. The methodology has been extended to intramolecular nitrile oxide cycloaddition (INOC) reactions to access highly useful chromane derivatives 7-8 (75-80% isolated yields). Magtrieve^™, as a new reagent for 1,3-DC reactions, has offered excellent substrate generality and at the same time demonstrated tolerance toward sensitive protecting groups and electron-rich functional groups.     

Facile entries for regioselective synthesis of [1,2,4]triazolo-[4,3-a]pyrimidin-5(1H)-ones from 2-thiouracil

Three new alternative synthetic strategies based on reactions of hydrazonoyl halides 3 with 2-methylthiouracil 2 and treatment of either 2-pyrimidinyl thiohydrazonates 8 or the diazonium coupling products of active (pyrimidin-2-ylthio)methylene compounds 12 with sodium ethoxide in ethanol are described for the title compounds. The mechanisms and regiochemistry of the studied reactions are discussed.     

Metal ions recognition by 1,2,3-triazolium calix[4]arene esters synthesized via click chemistry

Two triazole-modified calix[4]arene diesters were synthesized via Huisgen 1,3-dipolar cycloaddition between azides esters and alkynylcalixarenes. Their structures had been deduced from ¹H NMR, element analysis and ESI-MS. Two-phase extraction experiments indicated that triazole-modified calix[4]arene diethylester 3a exhibited Cs⁺ selectivity.     

A theoretical investigation of intermolecular interaction of a phthalimide based “on–off” sensor with different halide ions: tuning its efficiency and electro-optical properties

The interaction between chemosensor, N-(2-methyl-1,3-dioxo-indan-5-yl)-benzamide (1) and different halide ions (F ^? , Cl^? and Br^?) has been investigated using density functional theory (DFT). A clear insight of the sensor anion binding process has been presented. Our calculations revealed that the observed colorimetric and fluorescent signals are induced due to the ground state deprotonation of the sensor molecule caused by F^? which has two times higher binding affinity than other halide ions (Cl^? and Br^?). Derivatives of system 1 have been made to find a better sensor with higher binding affinity and longer wavelength of absorption. All the derivatives are better sensors than the parent 1 except 4-methyl-N-(2-methyl-1,3-dioxo-indan-5-yl)-benzamide (2). Among these derivatives, trimethyl-[4-(2-methyl-1,3-dioxo-indan-5-ylcarbamoyl)-phenyl]-ammonium (8) and (5-benzoylamino-1,3-dioxo-indan-2-yl)-trimethyl-ammonium (9) showed a change to higher binding energies of about 58 Kcal/mol and longer absorption wavelengths of 53 nm after deprotonation process than the parent system 1 which is highly demanded in selective chemical sensing. Systems 8, 9 and their deprotonated zwitterionic forms (8z and 9z) have also been studied for their nonlinear optical responses. Systems 8, 9 showed significantly good first hyperpolarizability (β) of 84 × 10^?30 and 40 × 10^?30 esu, respectively. These β values increase in zwitterionic states up to 216 × 10^?30 and 109 × 10^?30 esu, respectively after deprotonation with F^?, representing a new signal of deprotonation.     

Syntheses and extraction properties of novel biscalixarene and thiacalix[4]arene hydrazone derivatives

By reacting thiacalix[4]arene with p-tosyloxyethoxylbenzaldehyde 1, 3-bis(benzaldehyde-4-oxyethyloxy)-p-tert-butylthiacalix[4]arene (2) were prepared in yield of 65%. Refluxing compound 2 with aniline, salicylic hydrazide, nicotinic hydrazide and isonicotinic hydrazide, novel ringopening 1,3-bis-arylformyl-hydrazone substituted thiacalix[4]arene derivatives (3a–3d) were obtained in yields of 77–89%. Refluxing compound 2 with o-phenylendiamine, oxalyl dihydrazide, malonic dihydrazide and adipic dihydrazide in “1 + 1” intermolecular condensation mode under diluted condition, novel 1,3-bis-acyl hydrazone-bridged calix[4]arene derivatives (4a–4d) were prepared in good yields. Moreover, by condensating compound 2 with 1,3-bis(hydrazinocarbonyl-methoxy)-p-tert-butylcalix[4]arene (5), the first example of hydrazone-bridged biscalixarene (6) with calix[4]arene and thiacalix[4]arene subunits was facilely synthesized in yield of 90%. The noncompetitive and competitive extracting experiments showed that these novel hosts were good receptors for both metal cations and α-amino acids. Compounds 3a–3d and 4a–4d showed similar binding properties with high extraction percentage but low extracting selectivities. Biscalixarene 6 exhibited not only high extracting abilities but also good extracting selectivities.     

In situ 1,3-dipolar azide cycloaddition reaction: synthesis of functionalized d-glucose based chiral piperidine and oxazepine analogues

Functionalized furanose-fused piperidines 4-6 and oxazepines 15-17, useful precursors for structurally unique bioactive nucleosides as well as for potential glycosidase inhibitors, have been synthesized by the application of 1,3-dipolar azide cycloaddition (DAC) reaction on d-glucose based substrates. The strategy works well even with the nucleoside analogue 8, affording the bicyclic nucleoside analogues 11 and 12.     

Complexation of the cesium cation with lithium ionophore VIII: extraction and DFT study

From extraction experiments and γ-activity measurements, the extraction constant corresponding to the equilibrium Cs⁺(aq) + 1·Na ⁺ (nb) = 1·Cs⁺(nb) + Na⁺(aq) taking place in the two-phase water-nitrobenzene system (1 = lithium ionophore VIII; aq = aqueous phase, nb = nitrobenzene phase) was evaluated as log K _ex (Cs⁺, 1·Na⁺) = ?0.5 ± 0.1. Further, the stability constant of the 1·Cs⁺ complex in nitrobenzene saturated with water was calculated for a temperature of 25 °C: log β _nb (1·Cs⁺) = 4.8 ± 0.2. Finally, by using quantum mechanical DFT calculations, the most probable structure of the cationic complex species 1·Cs⁺ was derived. In the resulting complex, the “central” cation Cs⁺ is bound by six bond interactions to the corresponding six oxygen atoms of the parent ligand 1.     

Stereoselective synthesis of tubuvaline methyl ester and tubuphenylalanine, components of tubulysins, tubulin polymerization inhibitors

Synthetic studies of two components of tubulysins, tubulin polymerization inhibitors are described. The highly stereoselective synthesis of tubuvaline methyl ester (2) was accomplished by 1,3-dipolar cycloaddition of nitrone d-6 and acrylic acid derivatives 7 as a key step. The synthesis of tubuphenylalanine (3) was conducted by an aldol reaction of a boron enolate of (S)-4-isopropyl-3-propionyl-2-oxazolidinone (13) with aldehyde 14, readily prepared from phenylalanine, followed by Barton deoxygenation under radical conditions.