Exploring a model of a chemokine receptor/ligand complex in an explicit membrane environment by molecular dynamics simulation: the human CCR1 receptor

The seven transmembrane helices G-protein-coupled receptors (GPCRs) form one of the largest superfamilies of signaling proteins found in humans. Homology modeling, molecular docking, and molecular dynamics (MD) simulation were carried out to construct a reliable model for CCR1 as one of the GPCRs and to explore the structural features and the binding mechanism of BX471 as one of the most potent CCR1 inhibitors. In this study, BX471 has been docked into the active site of the CCR1 protein. After docking, one 20 ns MD simulation was performed on the CCR1-ligand complex to explore effects of the presence of lipid membrane in the vicinity of the CCR1-ligand complex. At the end of the MD simulation, a change in the position and orientation of the ligand in the binding site was observed. This important observation indicated that the application of MD simulation after docking of ligands is useful. Explorative runs of molecular dynamics simulation on the receptor-ligand complex revealed that except for Phe85, Phe112, Tyr113, and Ile259, the rest of the residues in the active site determined by docking are changed. The results obtained are in good agreement with most of the experimental data reported by others. Our results show that molecular modeling and rational drug design for chemokine targets is a possible approach.     

Prior ligand exchange,followed by ligand coupling in the reaction of 2-pyridyl 2-thienyl sulfoxide with 2-thienyllithium or 2-selenophenyllithium

2-Pyridyl 2-thienyl sulfoxide was found to react with variously substituted 2-thienyllithiums and 2-selenophenyllithium, exclusively affording 2-(2-pyridyl)thiophenes and 2-(2-pyridyl)-selenophene and the disulfides derived from the substituted thiophenes and selenophene. Apparently, ligand exchange precedes ligand coupling. The coupling product always involved the pyridine nucleus, but no bithienyl-type products were formed.     

Calcium sensing receptor forms complex with and is up-regulated by caveolin-1 in cultured human osteosarcoma (Saos-2) cells

The calcium sensing receptor (CaSR) plays an important role for sensing local changes in the extracellular calcium concentration ([Ca(2+)](o)) in bone remodeling. Although the function of CaSR is known, the regulatory mechanism of CaSR remains controversial. We report here the regulatory effect of caveolin on CaSR function as a process of CaSR regulation by using the human osteosarcoma cell line (Saos-2). The intracellular calcium concentration ([Ca(2+)](i)) was increased by an increment of [Ca(2+)](o). This [Ca(2+)](i) increment was inhibited by the pretreatment with NPS 2390, an antagonist of CaSR. RT-PCR and Western blot analysis of Saos-2 cells revealed the presence of CaSR, caveolin (Cav)-1 and -2 in both mRNA and protein expressions, but there was no expression of Cav-3 mRNA and protein in the cells. In the isolated caveolae-rich membrane fraction from Saos-2 cells, the CaSR, Cav-1 and Cav-2 proteins were localized in same fractions (fraction number 4 and 5). The immuno-precipitation experiment using the respective antibodies showed complex formation between the CaSR and Cav-1, but no complex formation of CaSR and Cav-2. Confocal microscopy also supported the co-localization of CaSR and Cav-1 at the plasma membrane. Functionally, the [Ca(2+)](o)-induced [Ca(2+)](i) increment was attenuated by the introduction of Cav-1 antisense oligodeoxynucleotide (ODN). From these results, in Saos-2 cells, the function of CaSR might be regulated by binding with Cav-1. Considering the decrement of CaSR activity by antisense ODN, Cav-1 up-regulates the function of CaSR under normal physiological conditions, and it may play an important role in the diverse pathophysiological processes of bone remodeling or in the CaSR-related disorders in the body.     

A molecular docking model of SARS-CoV S1 protein in complex with its receptor, human ACE2

The exact residues within severe acute respiratory syndrome coronavirus (SARS-CoV) S1 protein and its receptor, human ACE2, involved in their interaction still remain largely undetermined. Identification of exact amino acid residues that are crucial for the interaction of S1 with ACE2 could provide working hypotheses for experimental studies and might be helpful for the development of antiviral inhibitor. In this paper, a molecular docking model of SARS-CoV S1 protein in complex with human ACE2 was constructed. The interacting residue pairs within this complex model and their contact types were also identified. Our model, supported by significant biochemical evidence, suggested receptor-binding residues were concentrated in two segments of S1 protein. In contrast, the interfacial residues in ACE2, though close to each other in tertiary structure, were found to be widely scattered in the primary sequence. In particular, the S1 residue ARG453 and ACE2 residue LYS341 might be the key residues in the complex formation.     

2:1-Cocyclization of but-2-yne with the π-allyl ligand in cationic π-allyl complexes of ruthenium,osmium, and rhodium

Conclusions A new reaction was found consisting of 2:l-cocyclization of but-2-yne and the -allyl ligand in Ru, Os, and Rh complexes with formation of 2-5--2,3,4,5-tetramethylcyclohexa-2,4-dien-1-yl--methyl derivatives of these metals.The investigation was carried out by A. S. Batsanov and Yu. T. Struchkov and the results were published separately.Translated from Izvestiya Akademii Nauk SSSR, Seriya Khimicheskaya, No. 4, pp. 855–859, April, 1988.The signal from one methyl group coincides with the solvent signal as shown by the substantial distortion of one of the lines of the acetone-d₆ multiplet.Each component of the doublet is a multiplet with 6 Hz.     

Reduction of an eta2-iminoacyl ligand to eta2-iminium enabled by adjacent carbon monoxide ligand replacement with a variable electron donor alkyne ligand in a cationic Tungsten(II) bis(acetylacetonate) complex

Cationic iminoacyl-carbonyl tungsten complexes of the type [W(CO) (eta (2)-MeNCR)(acac) 2] (+) (acac = acetylacetonate; R = Ph ( 1a), Me ( 1b)) easily undergo thermal substitution of CO with two-electron donors to yield [W(L)(eta (2)-MeNCR)(acac) 2] (+) (L = tert-butylisonitrile [R = Ph ( 2a), Me ( 2b)], 2,6-dimethylphenylisonitrile [R = Me ( 2c)], triphenylphosphine [R = Ph ( 3a), Me ( 3c)], and tricyclohexylphosphine [R = Ph ( 3b)]). Tricyclohexylphosphine complex 3b exhibits rapid, reversible phosphine ligand exchange at room temperature on the NMR time scale. Photolytic replacement of carbon monoxide with either phenylacetylene or 2-butyne occurs efficiently to form [W(eta (2)-alkyne)(eta (2)-MeNCR)(acac) 2] (+) complexes ( 5a- d) with a variable electron donor eta (2)-alkyne paired with the eta (2)-iminoacyl ligand in the W(II) coordination sphere. PMe 3 adds to 1a or 5b to form [W(L)(eta (2)-MeNC(PMe 3)Ph)(acac) 2] (+) [L = CO ( 4), MeCCMe ( 6)] via nucleophilic attack at the iminoacyl carbon. Addition of Na[HB(OMe) 3] to 5b yields W(eta (2)-MeCCMe)(eta (2)-MeNCHPh)(acac) 2, 8, which exhibits alkyne rotation on the NMR time scale. Addition of MeOTf to 8 places a second methyl group on the nitrogen atom to form an unusual cationic eta (2)-iminium complex [W(eta (2)-MeCCMe)(eta (2)-Me 2NCHPh)(acac) 2][OTf] ( 9[OTf], OTf = SO 3CF 3). X-ray structures of 2,6-dimethylphenylisonitrile complex 2c[BAr' 4 ], tricyclohexylphosphine complex 3b[BAr' 4 ], and phenylacetylene complex 5a[BAr' 4 ] confirm replacement of CO by these ligands in the [W(L)(eta (2)-MeNCR)(acac) 2] (+) products. X-ray structures of alkyne-imine complexes 6[BAr' 4 ] and 8 show products resulting from nucleophilic addition at the iminoacyl carbon, and the X-ray structure of 9[BAr' 4 ] reflects methylation at the imine nitrogen to form a rare eta (2)-iminium ligand.     

1, 1'-Binaphthyl-2, 2'-diamine Dihydrochloride: an Efficient Ligand for the N-Arylation of Imidazole with Aryl/heteroaryl Halides Catalyzed by CuI

Employing 1,1'-binaphthyl-2,2'-diamine(BINAM) dihydrochloride as an efficient and commercially available ligand, relatively mild and highly efficient copper-catalyzed coupling reactions of imidazole with aryl and heteroaryl halides have been developed. Various N-arylimidazoles could be synthesized in moderate to excellent yields.     

Synthesis and DNA interaction studies of ruthenium(II) complexes with isatino[1, 2-b]-1,4,8,9-tetraazatriphenylene as an intercalative ligand

The binding of the ruthenium(II) complexes [Ru(bpy)₂(ITAP)](ClO₄)₂ (bpy = 2,2’-bipyridine) and [Ru(phen)₂(ITAP)](ClO₄)₂ (phen = 1,10-phenanthroline, ITAP = isatino[1,2-b]-1,4,8,9-tetraazatriphenylene) to calf thymus DNA (CT-DNA) have been investigated with UV–visible and emission spectroscopy, viscosity measurements, thermal denaturation, and photoactivated cleavage. The experimental results indicate that the two complexes bind to CT-DNA through an intercalative mode. The two Ru(II) complexes in the presence of plasmid pBR322 DNA have been found to give rise to nicking of DNA upon irradiation.     

A CuII complex with an carbamoylcyanonitrosomethanide ligand formed in situ by the nucleophilic addition of water to dicyanonitrosomethanide: structure,spectral and magnetic properties

The complex (2,2′‐biquinoline‐κ²N,N′)(carbamoylcyanonitrosomethanide‐κ²N,O)chloridocopper(II) acetonitrile monosolvate, [Cu(C₃H₂N₃O₂)Cl(C₁₈H₁₂N₂)]·CH₃CN or [Cu(ccnm)Cl(biq)]·acn (acn is acetonitrile, biq is 2,2′‐biquinoline and ccnm is carbamoylcyanonitrosomethanide), (I), was prepared as a result of nucleophilic addition of water to the dicyanonitrosomethanide ion in the presence of Cu^II and biq. IR spectroscopy confirmed the presence of ccnm, biq and acn in (I). The solid‐state structure consists of the neutral complex containing ccnm and biq ligands, coordinated to the Cu^II atom in a bidendate chelating manner, and a chloride ligand, resulting in a distorted tetragonal pyramidal coordination of Cu^II. The asymmetric unit is supplemented by one molecule of solvated acn which, along with the nitrile group of ccnm, serves as an acceptor in intermolecular hydrogen bonding, creating infinite chains along the b axis. Magnetic measurements revealed a paramagnetic behaviour with a very small Weiss temperature Θ = −0.32 K and high anisotropy of the g tensor (g_x = 2.036, g_y = 2.120 and g_z = 2.205).     

Synthesis,characterization, and DNA binding of ruthenium(II) complexes with 2-benzo[b] furan-2-yl-1H-imidazo[4,5f][1,10]phenanthroline as an intercalative ligand

DNA-binding properties of a number of ruthenium complexes with different polypyridine ligands are reported. The new polypyridine ligand BFIP (=2-benzo[b] furan-2-yl-1H-imidazo[4,5-f][1,10]phenanthroline) and its ruthenium complexes [Ru(bpy)₂BFIP]²⁺ (bpy = 2,2′-bipyridine), [Ru(dmb)₂BFIP]²⁺ (dmb = 4,4′-dimethyl-2,2′-bipyridine), and [Ru(phen)₂BFIP]²⁺ (phen = 1,10-phenanthroline) have been synthesized and characterized by elemental analysis, mass spectra, IR, UV-Vis, ¹H- and ¹³C-NMR, and cyclic voltammetry. The DNA binding of these complexes to calf-thymus DNA (CT-DNA) was investigated by spectrophotometric, fluorescence, and viscosity measurements. The results suggest that ruthenium(II) complexes bind to CT-DNA through intercalation. Photocleavage of pBR 322 DNA by these complexes was also studied, and [Ru(phen)₂BFIP]²⁺ was found to be a much better photocleavage agent than the other two complexes.     

Activated carbon supported Co1.5PW12O40 as efficient catalyst for the production of 1, 2 cyclohexane diol by oxidation of cyclohexene with H2O2 in the presence of CO2

ABSTRACT

Vicinal diols are important building blocks for chemicals and pharmaceuticals. Currently, they are produced from olefins using solvents and harmful oxidants unfavorable from an environmental and economic point of view. This work lies on the synthesis of 1,2 cyclohexane diol from cyclohexene by a green route. To achieve it, a series of Cobalt Keggin heteropolyanion salt (Co_1.5PW₁₂O₄₀) loaded on activated carbon with different contents was prepared, characterized and tested for the synthesis of diol. The effect of various parameters such as reaction temperature, reaction time and CO₂ pressure on the reaction was studied. The effect of reaction temperature in the range 60-80 °C showed that high temperatures favor diol formation while low temperatures favor cyclohexanone and a segmented concave Arrhenius graph was observed. The results of this work showed that oxidation by H₂O₂ in the presence of CO₂ is an efficient oxidant system for the production of 1.2 cyclohexane diol over carbon activated carbon supported Co_1.5PW₁₂O₄₀. Thanks to CO₂ as a soft oxidizing agent, a conversion of 96.9% and a selectivity in 1, 2 cyclohexane diol of 64.2% was obtained. This simple, safe and environmentally method could be an alternative green route for vicinal diols production from alkenes.     

Direct monitoring of glycohemoglobin A1c in the blood samples of diabetic patients by capillary electrophoresis. Comparison with an immunoassay method

The capillary electrophoresis (CE) study was focused on quantifying glycohemoglobin A1c, HbA1c, in whole blood samples of patients suffering diabetes mellitus. The results showed that dynamic polyionic coating of the capillary made the method very reproducible. The precision evaluation, method comparison and bias estimation in CE were performed during 20 days with patient blood samples and with four control samples. The influence of the storage time and temperature on the glycohemoglobin levels were also tested. High resolution in CE could be used to show evidences of the ageing of the samples stored at -70 degrees C. The results showed that the ageing peak was not originated from HbA1c, because it did not affect the HbA1c level which was in balance with the results of fresh samples measured with immunoassay. The HbA1c % values of blood samples of 105 patients measured with the CE technique varied between 3.6 and 11.8 and they were approximately 2-3% lower than measured with immunoassay. The correlation (R2) of CE results with immunoassay and HPLC results were 0.962 and 0.781, respectively.     

A new chiral probe for sulfate anion: UV,CD, fluorescence,and NMR spectral studies of 1:1 and 2:1 complex formation and structure of chiral guanidinium-p-dimethylaminobenzoate conjugate with sulfate anion

A new chiral chromophoric host 1, possessing a 4-(N,N-dimethylamino)benzoate (DMAB) group tethered to a chiral bicyclic guanidinium subunit, was synthesized and applied to the probe for sulfate anion. Host 1 showed typical successive 1:1 and 2:1 host:guest complexation behavior toward the divalent sulfate anion, as revealed by UV-vis, CD, fluorescence, and 1H NMR spectroscopic studies. The DMAB chromophore was shown to be a sensitive CD spectral probe for assessing not only the complexation behavior but also complex stoichiometry and structure. The stepwise 1:1 and 2:1 complexation constants (K1 and K2) were determined as 1.53 x 10(6) and 4.84 x 10(4) M(-1), respectively, by NMR titration in CD3CN. The CD exciton chirality method allowed us to determine the chiral sense (spatial arrangement) of the two DMAB moieties in the 2:1 complex as negative (counterclockwise). The dual fluorescence behavior of DMAB was employed for elucidating the role of the countercation upon complexation of host 1 with sulfates possessing lipophilic countercation(s) such as tetrabutylammonium.     

Direct reactions of tellurium tetrahalides with chelating nitrogen ligands. Trapping of TeL2 by a 1,2-bis(arylimino)acenaphthene (aryl-BIAN) ligand and C-H activation of an alpha,alpha'-diiminopyridine (DIMPY) ligand

The reaction of TeI4 with the 2,6-diisopropylphenyl-substituted 1,2-bis(arylimino)acenaphthene ligand dpp-BIAN results in two-electron reduction of tellurium and formation of the complex (dpp-BIAN)TeI2, while treatment of TeCl4 with the alpha,alpha'-diiminopyridine ligand dpp-DIMPY causes C-H activation of an imino methyl group.     

Phenylselenenylalkanes,their adducts with the dirhodium complex Rh2(MTPA)4 and ligand exchange mechanisms in solution as studied by 1H, 13C and 77Se NMR spectroscopy

Twelve secondary phenylselenenylalkanes and ‐cycloalkanes were studied by ¹H, ¹³C and ⁷⁷Se NMR spectroscopy in the presence of the chiral dirhodium complex Rh₂[(R)‐MTPA]₄ [Rh–Rh; MTPA‐H = (R)‐(+)‐methoxytrifluoromethylphenylacetic acid, Mosher's acid]. The 1 : 1 and 2 : 1 adducts were identified in solution at low temperatures. Two different mechanisms of ligand exchange, ‘switch’ and ‘replacement,’ were characterized and their energy barriers estimated and steric congestion during the exchange transitions is discussed. Coordination‐induced shifts Δδ(⁷⁷Se) are generally negative (shielding). For menthone bis(phenylselenoacetal) (7), these values indicate that a selection of the two selenium atoms occurs showing that 7 prefers complexation at the equatorial selenium atom whereas the axial selenium atom is hardly involved. Copyright © 2003 John Wiley & Sons, Ltd.     

A highly efficient synthesis of antiobestic ligand GW501516 for the peroxisome proliferator-activated receptor δ through in situ protection of the phenol group by reaction with a Grignard reagent

A new synthesis of an agonist for the peroxisome proliferator-activated receptor δ (PPARδ) GW501516 as a potential antiobesity drug is described. The synthetic route involves the in situ protection of the phenol group with a Grignard reagent and a regio-controlled one-pot reaction for the formation of a sulfide bond as the key step. Starting from commercially available 4-iodo-2-methylphenol, this approach affords GW501516 with an overall yield of 87%.     

Structural characterization of four members of the electron-transfer series [PdII(L)2)2]n (L = o-Iminophenolate derivative; n = 2-, 1-, 0, 1+, 2+). ligand mixed valency in the monocation and monoanion with S = (1)/(2) ground states

The reaction of the ligand 2-(2-trifluoromethyl)anilino-4,6-di-tert-butylphenol, H(2)((1)L(IP)), and PdCl(2) (2:1) in the presence of air and excess NEt(3) in CH(2)Cl(2) produced blue-green crystals of diamagnetic [Pd(II)((1)L(ISQ))(2)] (1), where ((1)L(ISQ))(*)(-) represents the o-iminobenzosemiquinonate(1-) pi radical anion of the aromatic ((1)L(IP))(2-) dianion. The diamagnetic complex 1 was chemically oxidized with 1 equiv of Ag(BF(4)), affording red-brown crystals of paramagnetic (S = (1)/(2)) [Pd(II)((1)L(ISQ))((1)L(IBQ))](BF(4)) (2), and one-electron reduction with cobaltocene yielded paramagnetic (S = (1)/(2)) green crystals of [Cp(2)Co][Pd(II)((1)L(ISQ))((1)L(IP))] (3); ((1)L(IBQ))(0) represents the neutral, diamagnetic quinone form. Complex 1 was oxidized with 2 equiv of [NO]BF(4), affording green crystals of diamagnetic [Pd(II)((1)L(IBQ))(2)](3)(BF(4))(4){(BF(4))(2)H}(2).4CH(2)Cl(2) (5). Oxidation of [Ni(II)((1)L(ISQ))(2)] (S = 0) in CH(2)Cl(2) solution with 2 equiv of Ag(ClO(4)) generated crystals of [Ni(II)((1)L(IBQ))(2)(ClO(4))(2)].2CH(2)Cl(2) (6) with an S = 1 ground state. Complexes 1-5 constitute a five-membered complete electron-transfer series, [Pd((1)L)(2)](n) (n = 2-, 1-, 0, 1+, 2+), where only species 4, namely, diamagnetic [Pd(II)((1)L(IP))(2)](2-), has not been isolated; they are interrelated by four reversible one-electron-transfer waves in the cyclic voltammogram. Complexes 1, 2, 3, 5, and 6 have been characterized by X-ray crystallography at 100 K, which establishes that the redox processes are ligand centered. Species 2 and 3 exhibit ligand mixed valency: [Pd(II)((1)L(ISQ))((1)L(IBQ))](+) has localized ((1)L(IBQ))(0) and ((1)L(ISQ))(*)(-) ligands in the solid state, whereas in [Pd(II)((1)L(ISQ))((1)L(IP))](-) the excess electron is delocalized over both ligands in the solid-state structure of 3. Electronic and electron spin resonance spectra are reported, and the electronic structures of all members of this electron-transfer series are established.