Quantum versus classical electron transfer energy as reaction coordinate for the aqueous Ru2+/Ru3+ redox reaction

Applying density functional theory (DFT)-based molecular dynamics simulation methods we investigate the effect of explicit treatment of electronic structure on the solvation free energy of aqueous Ru²⁺ and Ru³⁺.Our approach is based on the Marcus theory of redox half reactions, focussing on the vertical energy gap for reduction or oxidation of a single aqua ion. We compare the fluctuations of the quantum and classical energy gap along the same equilibrium ab initio molecular dynamics trajectory for each oxidation state. The classical gap is evaluated using a standard point charge model for the charge distribution of the solvent molecules (water). The quantum gap is computed from the full DFT electronic ground state energies of reduced and oxidized species, thereby accounting for the delocalization of the electron in the donor orbital and reorganization of the electron cloud after electron transfer (ET). The fluctuations of the quantum ET energy are well approximated by gaussian statistics giving rise to parabolic free energy profiles. The curvature is found to be independent of the oxidation state in agreement with the linear response assumption underlying Marcus theory. By contrast, the diabatic free energy curves evaluated using the classical gap as order parameter, while also quadratic, are asymmetric reflecting the difference in oxidation state. The response of these two order parameters is further analysed by a comparison of the spectral density of the fluctuations and the corresponding reorganization free energies.     

Diabatic free energy curves and coordination fluctuations for the aqueous Ag+Ag2+ redox couple: a biased Born-Oppenheimer molecular dynamics investigation

Biased Born-Oppenheimer molecular dynamics simulations are performed to compute redox potential and free energy curves for the redox half reaction Ag(+)-->Ag(2+)+e(-) in aqueous solution. The potential energy surfaces of reactant and product state are linearly coupled and the system transferred from the reduced state to the oxidized state by variation of the coupling parameter from 0 to 1. The redox potential is obtained by thermodynamic integration of the average ionization energy of Ag(+). Diabatic free energy curves of reduced (R) and oxidized (O) states are obtained to good statistical accuracy by reweighting and combining the set of biased distributions of the ionization energy. The diabatic free energy curves of Ag(+) and Ag(2+) are parabolic over a wide range of the reaction coordinate in agreement with the linear response assumption that underlies Marcus theory. However, we observe deviations from parabolic behavior in the equilibrium region of Ag(+) and find different values for the reorganization free energy of R (1.4 eV) and O (0.9 eV). The computed reorganization free energy of Ag(2+) is in good agreement with the experimental estimate of 0.9-1.2 eV obtained from photoelectron spectroscopy. As suggested by our calculations, the moderate deviation from linear response behavior found for Ag(+) is likely related to the highly fluxional solvation shell of this ion, which exhibits water exchange reactions on the picosecond time scale of the present molecular dynamics simulation.     

Flash-quench technique employed to study the one-electron reduction of triiodide in acetonitrile: evidence for a diiodide reaction product

The one-electron reduction of triiodide (I(3)(-)) by a reduced ruthenium polypyridyl compound was studied in an acetonitrile solution with the flash-quench technique. Reductive quenching of the metal-to-ligand charge-transfer excited state of [Ru(II)(deeb)(3)](2+) by iodide generated the reduced ruthenium compound [Ru(II)(deeb(-))(deeb)(2)](+) and diiodide (I(2)(?-)). The subsequent reaction of [Ru(II)(deeb(-))(deeb)(2)](+) with I(3)(-) indicated that I(2)(?-) was a product that appeared with a second-order rate constant of (5.1 ± 0.2) × 10(9) M(-1) s(-1). After correction for diffusion and some assumptions, Marcus theory predicted a formal potential of -0.58 V (vs SCE) for the one-electron reduction of I(3)(-). The relevance of this reaction to solar energy conversion is discussed.     

Theoretical study of O--O single bond formation in the oxidation of water by the ruthenium blue dimer

The first key step in the oxidation of water to O(2) by the oxidized species [(bpy)(2)(O)Ru(V)ORu(V)(O)(bpy)(2)](4+) of the Ru blue dimer is studied using density functional theory (DFT) and an explicit solvent treatment. In the model reaction system [L(2)(O)Ru(V)ORu(V)(O)L(2)](4+)·(H(2)O)(4)·W(76), the surrounding water solvent molecules W are described classically while the inner core reaction system is described quantum mechanically using smaller model ligands (L). The reaction path found for the O--O single bond formation involves a proton relay chain: direct participation of two water molecules in two proton transfers to yield the product [L(2)(HOO)Ru(IV)ORu(IV)(OH)L(2)](4+)·(H(2)O)(3)·W(76). The calculated ～3 kcal/mol reaction free energy and ～15 kcal/mol activation free energy barrier at 298 K are consistent with experiment. Structural changes and charge flow along the intrinsic reaction coordinate, the solvent's role in the reaction barrier, and their significance for water oxidation catalysis are examined in detail.     

Photoinduced electron transfer from tryptophan to Ru(II)TAP complexes: the primary process for photo-cross-linking with oligopeptides

The photoreaction mechanism of [Ru(TAP)(2)(phen)](2+) and [Ru(TAP)(3)](2+) (TAP = 1,4,5,8-tetraazaphenanthrene) with tryptophan (Trp), N-acetyl-Trp, and Lys-Trp-Lys is examined. The existence of a photoelectron-transfer process from the amino acid unit is demonstrated by laser flash photolysis experiments. The back electron transfer (BET) from the reduced complex to the oxidized amino acid, occurring at the microsecond time scale, corresponds approximately to an equimolecular-bimolecular process; however, it is disturbed by another reaction, originating from the oxidized Trp. Moreover, in competition with the BET, the reduced and oxidized intermediates give rise to an adduct. The latter is clearly detected by gel electrophoresis experiments in denaturing conditions, with a system composed of an oligonucleotide derivatized at the 3' end by the Ru(II)TAP complex and hybridized with the complementary sequence functionalized at the 5' end by the tripeptide Lys-Trp-Lys. Thus, upon illumination, a cross-linking between the two strands is observed, which originates from the presence of a Trp residue.     

Activation energy for a model ferrous-ferric half reaction from transition path sampling

Activation parameters for the model oxidation half reaction of the classical aqueous ferrous ion are compared for different molecular simulation techniques. In particular, activation free energies are obtained from umbrella integration and Marcus theory based thermodynamic integration, which rely on the diabatic gap as the reaction coordinate. The latter method also assumes linear response, and both methods obtain the activation entropy and the activation energy from the temperature dependence of the activation free energy. In contrast, transition path sampling does not require knowledge of the reaction coordinate and directly yields the activation energy [C. Dellago and P. G. Bolhuis, Mol. Simul. 30, 795 (2004)]. Benchmark activation energies from transition path sampling agree within statistical uncertainty with activation energies obtained from standard techniques requiring knowledge of the reaction coordinate. In addition, it is found that the activation energy for this model system is significantly smaller than the activation free energy for the Marcus model, approximately half the value, implying an equally large entropy contribution.     

Reactivity and spectroscopy of the {Ru(DMAP)5} fragment: an {Ru(NH3)5} analogue

Reaction of trans-Ru(DMSO)4Cl2 with DMAP (DMAP = 4-dimethylaminopyridine) yields the yellow [Ru(DMAP)6](2+) cation in good yield. The crystal and molecular structure of [Ru(DMAP)6]Cl2.6CH3CH2OH was determined by X-ray diffraction methods. The complex crystallizes in the trigonal R3 space group with a = b = 16.373(1), c = 20.311(1) A, gamma = 120 degrees , and Z = 3 molecules per unit cell. The reaction of [Ru(DMAP)6](2+) in aerobic water gives the red [Ru(III)(DMAP)5(OH)](2+) cation. This complex shows a chemical behavior similar to [Ru(III)(NH3)5Cl](2+) and allows the preparation of a family of [Ru(DMAP)5L](n+) complexes. Their electronic properties indicate that the {Ru(II)(DMAP)5} fragment is a weaker pi-donor than {Ru(II)(NH 3)5}. Our density functional theory (DFT) calculations show that in {Ru(II)(DMAP)5} the DMAP ligands can compete for the pi electron density of the ruthenium making the fragment a weaker pi-donor.     

Molecular dynamics investigation of ferrous-ferric electron transfer in a hydrolyzing aqueous solution: calculation of the pH dependence of the diabatic transfer barrier and the potential of mean force

We present a molecular model for ferrous-ferric electron transfer in an aqueous solution that accounts for electronic polarizability and exhibits spontaneous cation hydrolysis. An extended Lagrangian technique is introduced for carrying out calculations of electron-transfer barriers in polarizable systems. The model predicts that the diabatic barrier to electron transfer increases with increasing pH, due to stabilization of the Fe3+ by fluctuations in the number of hydroxide ions in its first coordination sphere, in much the same way as the barrier would increase with increasing dielectric constant in the Marcus theory. We have also calculated the effect of pH on the potential of mean force between two hydrolyzing ions in aqueous solution. As expected, increasing pH reduces the potential of mean force between the ferrous and ferric ions in the model system. The magnitudes of the predicted increase in diabatic transfer barrier and the predicted decrease in the potential of mean force nearly cancel each other at the canonical transfer distance of 0.55 nm. Even though hydrolysis is allowed in our calculations, the distribution of reorganization energies has only one maximum and is Gaussian to an excellent approximation, giving a harmonic free energy surface in the reorganization energy F(DeltaE) with a single minimum. There is thus a surprising amount of overlap in electron-transfer reorganization energies for Fe(2+)-Fe(H2O)6(3+), Fe(2+)-Fe(OH)(H2O)5(2+), and Fe(2+)-Fe(OH)2(H2O)+ couples, indicating that fluctuations in hydrolysis state can be viewed on a continuum with other solvent contributions to the reorganization energy. There appears to be little justification for thinking of the transfer rate as arising from the contributions of different hydrolysis states. Electronic structure calculations indicate that Fe(H2O)6(2+)-Fe(OH)n(H2O)(6-n)(3-n)+ complexes interacting through H3O2- bridges do not have large electronic couplings.     

Marcus电子转移理论的科学性探讨

利用科学原理对Marcus电子转移理论的科学性进行了考察, 结果表明Marcus电子转移理论违背了能量守恒定律.     

Relativistic DFT study on the reaction mechanism of second-row transition metal Ru with CO2

To estimate the importance of relativistic effects on the reaction mechanisms between Ru and CO2, the potential energy surfaces have been performed in the triplet and quintet electronic states using quasi-relativistic (Pauli), zero-order regularly approximated (ZORA), and nonrelativistic (NR) density functional theory (DFT) at the PW91/TZP level. The results demonstrate that there are two rival reaction mechanisms: one is an addition mechanism and the other is an insertion mechanism in the triplet state. The only mechanism in the quintet state is the insertion mechanism. The most favored reaction mechanism in Ru + CO2 is that the Ru atom in its ground state first attacks the CO bond of CO2, forming q-Ru(CO)O (5A') with the insertion mechanism, and then undergoes an intersystem crossing to t-Ru(CO)O (3A'). Then it crosses t-TS3 to produce t-ORuCO molecule. The relativistic effects are important for reactivity of the second-row transition metal to CO2. In the key step of t-Ru(CO)O via t-TS3 to t-ORuCO, relativistic effects reduce the barrier energy by 10.3 kcal/mol, which is nearly half the nonrelativistic barrier energy.     

Stability of [Ru(II)(tpy)(bpy)(OH(2))](2+)-modified graphite electrodes during indirect electrolyses

The stability of a graphite felt electrode modified by covalent attachment of [Ru(II)(tpy)(bpy)(OH(2))](2+) is investigated during the indirect electrolyses of alcohols in a flow cell. The continuous increase of the local potential of the electrode during the electrolyses attests to its degradation. Cyclic voltammetry analyses of the modified electrode after electrolyses show a total decrease of 80-90% of the wave corresponding to the Ru(III/II) couple. The concentration of remaining alcohol measured at the outlet of the cell is almost constant during all the electrolyses but increase when the potential exceeds 0.95 V(SCE). At low potentials, the electrode can be regenerated by reaction with Ru(II)Cl(2)(DMSO)(tpy) and then CF(3)SO(3)H, followed by hydrolysis, showing that the bipyridine ligand remains covalently attached to the electrode. At high potentials, the graphite is oxidized and the catalyst is partly lost in the reaction medium. XPS analyses of Ru core levels reveal that the ruthenium disappeared after electrolysis, showing that the degradation of the modified electrode is due to the demetalation of the oxidized complex.     

In-situ X-ray absorption spectroscopy study of Pt and Ru chemistry during methanol electrooxidation

Methanol electrooxidation in a 0.5 M sulfuric acid electrolyte containing 1.0 M CH3OH was studied on 30% Pt/carbon and 30% PtRu/carbon (Pt/Ru = 1:1) catalysts using X-ray absorption spectroscopy (XAS). Absorption by Pt and Ru was measured at constant photon energy in the near edge region during linear potential sweeps of 10-50 mV/s between 0.01 and 1.36 V vs rhe. The absorption results were used to follow Pt and Ru oxidation and reduction under transient conditions as well as to monitor Ru dissolution. Both catalysts exhibited higher activity for methanol oxidation at high potential following multiple potential cycles. Correlation of XAS data with the potential sweeps indicates that Pt catalysts lose activity at high potentials due to Pt oxidation. The addition of Ru to Pt accelerates the rate of methanol oxidation at all potentials. Ru is more readily oxidized than Pt, but unlike Pt, its oxidation does not result in a decrease in catalytic activity. PtRu/carbon catalysts underwent significant changes during potential cycling due to Ru loss. Similar current density vs potential results were obtained using the same PtRu/carbon catalyst at the same loading in a membrane electrode assembly half cell with only a Nafion (DuPont) solid electrolyte. The results are interpreted in terms of a bifunctional catalyst mechanism in which Pt surface sites serve to chemisorb and dissociate methanol to protons and carbon monoxide, while Ru surface sites activate water and accelerate the oxidation of the chemisorbed CO intermediate. PtRu/carbon catalysts maintain their activity at very high potentials, which is attributed to the ability of the added Ru to keep Pt present in a reduced state, a necessary requirement for methanol chemisorption and dissociation.     

Electrostatic bubbles and supramolecular assistance of photosensitization by carboxylated Ru(II) complexes

The paper examines the supramolecular effects at play during photosensitization by carboxylated Ru(II) sensitizers, both by experiment and by modeling. Experimentally, twelve Ru(II) complexes of pyrazolylpyridine and polypyridine ligands, including two benchmark complexes and two new species, were assessed as photosensitizers by measurement of the kinetics of methyl viologen cation radical (MV(*)(+)) generation through an oxidative, photoinduced electron transfer (PET) to methyl viologen (MV(2+)) under continuous irradiation in the presence of a sacrificial reductant. All complexes, luminescent or not, produced measurable amounts of MV(*)(+) in CH(3)CN. The assessment protocol was found to be useful with sensitizers of widely varying excited-state lifetimes (tau) as well as being easier and faster than conventional approaches. The seven sensitizers bearing peripheral COOH groups were found to be significantly more active than their non-carboxylated analogues, which is consistent with ionization of the COOH groups and electrostatic promotion of PET. Only the luminescent complexes were active in aqueous solvents, where tau appears to be the dominant effector. The benefits are exemplified by the singly carboxylated [Ru(H1)(bpy)(2)](2+) (H1 is 1-(4-carboxyphenyl)-3-(2-pyridyl)-4,5,6,7-tetrahydroindazole), a weakly luminescent sensitizer that was less active in aqueous solvents than [Ru(bpy)(3)](2+) (bpy is 2,2'-bipyridine), but which became the better sensitizer in CH(3)CN. Computationally, electrostatic field and dissociation energy calculations demonstrated that even a single peripheral COO(-) substituent suffices to provide supramolecular assistance: it defines a spheric "bubble" of electrostatically attractive space that is sufficiently large to allow the supramolecular preassociation of MV(2+), which provides an entropic advantage to PET that reduces the importance of tau in organic solvent. Calculations also show that the PET is electrostatically favored over its reverse (BET) even with cationic sensitizers because the "bubble" contracts after PET while the bulk medium becomes more repulsive, and favorable cation exchanges can occur to effect post-PET dissociation. Two peripheral COO(-) groups can define a two-point binding site for MV(2+) in an attractive sector of space that contracts to a kidney-shaped "bubble" after PET. This enables unimolecular PET while the reverse reaction remains bimolecular. The resultant benefits are illustrated with [Ru(Na1)(2)(bpy)](2+), a very weakly luminescent sensitizer that was totally inactive in H(2)O but appreciably active in CH(3)CN, despite the need to displace Na(+) in order to derive any electrostatic benefit. The Marcus free energies of activation for PET and BET corroborate the benefits of carboxylation, solvent, and other factors and correlated with the experimental rate constants.     

Electrogenerated chemiluminescence 69: the tris(2,2'-bipyridine)ruthenium(II), (Ru(bpy)3(2+))/tri-n-propylamine (TPrA) system revisited-a new route involving TPrA*+ cation radicals

The reaction occurring on electrooxidation of Ru(bpy)(3)(2+) (bpy = 2,2'-bipyridine) and tri-n-propylamine (TPrA) leads to the production of Ru(bpy)(3)(2+) and light emission. The accepted mechanism of this widely used reaction involves the reaction of Ru(bpy)(3)(3+) and a reduced species derived from the free radical of the TPrA. However, this mechanism does not account for many of the observed features of this reaction. A new route involving the intermediacy of TPrA cation radicals (TPrA(*+)) in the generation of Ru(bpy)(3)(2+) was established, based on results of scanning electrochemical microscopy (SECM)-electrogenerated chemiluminescence (ECL) experiments, as well as cyclic voltammetry simulations. A half-life of approximately 0.2 ms was estimated for TPrA(*+) in neutral aqueous solution. Direct evidence for TPrA(*+) in this medium was obtained via flow cell electron spin resonance (ESR) experiments at approximately 20 degrees C. The ESR spectra of the TPrA(*+) species consisted of a relatively intense and sharp septet with a splitting of approximately 20 G and a g value of 2.0038.     

Electrochemical and spectroscopic characterization of a series of mixed-ligand diruthenium compounds

The electrochemistry and spectroelectrochemistry of a novel series of mixed-ligand diruthenium compounds were examined. The investigated compounds having the formula Ru(2)(CH(3)CO(2))(x)(Fap)(4-x)Cl where x = 1-3 and Fap is 2-(2-fluoroanilino)pyridinate anion were made from the reaction of Ru(2)(CH(3)CO(2))(4)Cl with 2-(2-fluoroanilino)pyridine (HFap) in refluxing methanol. The previously characterized Ru(2)(Fap)(4)Cl as well as the three newly isolated compounds represented as Ru(2)(CH(3)CO(2))(Fap)(3)Cl (1), Ru(2)(CH(3)CO(2))(2)(Fap)(2)Cl (2), and Ru(2)(CH(3)CO(2))(3)(Fap)Cl (3) possess three unpaired electrons with a Ru(2)(5+) dimetal core. Complexes 1 and 2 have well-defined Ru(2)(5+/4+) and Ru(2)(5+/6+) redox couples in CH(2)Cl(2), but 3 exhibits a more complicated electrochemical behavior due to equilibria involving association or dissociation of the anionic chloride axial ligand on the initial and oxidized or reduced forms of the compound. The E(1/2) values for the Ru(2)(5+/4+) and Ru(2)(5+/6+) processes vary linearly with the number of CH(3)CO(2)(-) bridging ligands on Ru(2)(CH(3)CO(2))(x)(Fap)(4-x)Cl and plots of reversible half-wave potentials vs the number of acetate groups follow linear free energy relationships with the largest substituent effect being observed for the oxidation. The major UV-visible band of the examined compounds in their neutral Ru(2)(5+) form is located between 550 and 800 nm in CH(2)Cl(2) and also varies linearly with the number of CH(3)CO(2)(-) ligands on Ru(2)(CH(3)CO(2))(x)(Fap)(4-x)Cl. The electronic spectra of the singly oxidized and singly reduced forms of each diruthenium species were characterized by UV-visible spectroelectrochemistry in CH(2)Cl(2).     

Theoretical study on electronic and spin structures of [Fe2S2](2+,+) cluster: reference interaction site model self-consistent field (RISM-SCF) and multireference second-order Møller-Plesset perturbation theory (MRMP) approach

Electronic structures of [Fe(2)S(2)(SCH(3))(4)](2-,3-) in DMSO solution are calculated using reference interaction site model complete active space self-consistent field (RISM-CASSCF)/multireference second-order M?ller-Plesset perturbation theory (MRMP) method. For the reduced state, we obtain both the low-spin Fe(3+)Fe(2+) localized and high-spin Fe(2.5+)Fe(2.5+) delocalized forms, which are very close in energy. The spin interaction constants obtained from the energies of states with various spin multiplicities are in good agreement with the available experimental estimates both for the oxidized and for the reduced states. The dynamic electron correlation effect is found to be important in estimating the spin interaction between the Fe ions. The redox potentials are calculated to be 2.87 and 2.78 eV for the localized and delocalized reduced states, respectively, which are close to the experimental values. We devise a simple model for calculating the free energy curves of the reduction process based on the RISM-SCF theory. The activation barrier height is calculated to be 7.4 kcal/mol at the equilibrium geometry of oxidized state, indicating that the reduction reaction will occur efficiently in DMSO solvent. The effect of solvent fluctuation on the free energy profiles is discussed on the basis of the present calculations.     

Electronic modification of the [Ru(II)(tpy)(bpy)(OH(2))](2+) scaffold: effects on catalytic water oxidation

The mechanistic details of the Ce(IV)-driven oxidation of water mediated by a series of structurally related catalysts formulated as [Ru(tpy)(L)(OH(2))](2+) [L = 2,2'-bipyridine (bpy), 1; 4,4'-dimethoxy-2,2'-bipyridine (bpy-OMe), 2; 4,4'-dicarboxy-2,2'-bipyridine (bpy-CO(2)H), 3; tpy = 2,2';6',2'-terpyridine] is reported. Cyclic voltammetry shows that each of these complexes undergo three successive (proton-coupled) electron-transfer reactions to generate the [Ru(V)(tpy)(L)O](3+) ([Ru(V)=O](3+)) motif; the relative positions of each of these redox couples reflects the nature of the electron-donating or withdrawing character of the substituents on the bpy ligands. The first two (proton-coupled) electron-transfer reaction steps (k(1) and k(2)) were determined by stopped-flow spectroscopic techniques to be faster for 3 than 1 and 2. The addition of one (or more) equivalents of the terminal electron-acceptor, (NH(4))(2)[Ce(NO(3))(6)] (CAN), to the [Ru(IV)(tpy)(L)O](2+) ([Ru(IV)=O](2+)) forms of each of the catalysts, however, leads to divergent reaction pathways. The addition of 1 eq of CAN to the [Ru(IV)=O](2+) form of 2 generates [Ru(V)=O](3+) (k(3) = 3.7 M(-1) s(-1)), which, in turn, undergoes slow O-O bond formation with the substrate (k(O-O) = 3 × 10(-5) s(-1)). The minimal (or negligible) thermodynamic driving force for the reaction between the [Ru(IV)=O](2+) form of 1 or 3 and 1 eq of CAN results in slow reactivity, but the rate-determining step is assigned as the liberation of dioxygen from the [Ru(IV)-OO](2+) level under catalytic conditions for each complex. Complex 2, however, passes through the [Ru(V)-OO](3+) level prior to the rapid loss of dioxygen. Evidence for a competing reaction pathway is provided for 3, where the [Ru(V)=O](3+) and [Ru(III)-OH](2+) redox levels can be generated by disproportionation of the [Ru(IV)=O](2+) form of the catalyst (k(d) = 1.2 M(-1) s(-1)). An auxiliary reaction pathway involving the abstraction of an O-atom from CAN is also implicated during catalysis. The variability of reactivity for 1-3, including the position of the RDS and potential for O-atom transfer from the terminal oxidant, is confirmed to be intimately sensitive to electron density at the metal site through extensive kinetic and isotopic labeling experiments. This study outlines the need to strike a balance between the reactivity of the [Ru═O](z) unit and the accessibility of higher redox levels in pursuit of robust and reactive water oxidation catalysts.     

Binding to DNA purine base and structure-activity relationship of a series of structurally related Ru(II) antitumor complexes: a theoretical study

The thermodynamics of the binding of a series of structurally related Ru(II) antitumor complexes, that is, alpha-[Ru(azpy)2Cl2] 1, beta-[Ru(azpy)2Cl2] 2, alpha-[Ru(azpy)(bpy)Cl2] 3, and cis-[Ru(bpy)2Cl2] 4 to DNA purine bases (gunine, adenine at N7 site) has been studied by using the DFT method. The binding of imine form of 9-methyladenine (9-MeAde) to the Ru(II) moiety in a didentate fashion via its N6 and N7 atoms was also considered. The geometrical structures of the DNA model base adducts were obtained at the B3LYP/(LanL2DZ + 6-31G(d)) level in vacuo. The following exact single-point energy calculations were performed at the B3LYP/(LanL2DZ(f)+6-311+G(2d, 2p)) level both in vacuo and in aqueous solution using the COSMO model. The bond dissociation enthalpies and free energies, reaction enthalpies and free energies both in the gas phase and in aqueous solution for all considered Ru(II)-DNA model base adducts were obtained from the computations. The calculated bond dissociation enthalpies and free energies allow us to build a binding affinity order for the considered Ru(II)-DNA model base adducts. The theoretical results show that the guanine N7 is a preferred site for this series of complexes and support such an experimental fact that alpha-[Ru(azpy)(bpy)(9-EtGua)H2O](2+) (3-(9-EtGua)) is isomerized to alpha'-[Ru(azpy)(bpy)(9-EtGua)H2O](2+) (3'-(9-EtGua)). On the basis of structural and thermodynamical characteristics, the possible structure-activity relationship was obtained, and the distinct difference in cytotoxicities of this series of structurally related antitumor complexes was explained theoretically.     

DNA biosensor based on the electrochemiluminescence of Ru(bpy)3(2+) with DNA-binding intercalators

This paper reports a novel detection method for DNA hybridization based on the electrochemiluminescence (ECL) of Ru(bpy)(3)(2+) with a DNA-binding intercalator as a reductant of Ru(bpy)(3)(3+). Some ECL-inducible intercalators have been screened in this study using electrochemical methods combined with a chemiluminescent technique. The double-stranded DNA intercalated by doxorubicin, daunorubicin, or 4',6-diamidino-2-phenylindole (DAPI) shows a good ECL with Ru(bpy)(3)(2+) at +1.19 V (versus Ag/AgCl), while the non-intercalated single-stranded DNA does not. In order to stabilize the self-assembled DNA molecules during ECL reaction, we constructed the ECL DNA biosensor separating the ECL working electrode with an immobilized DNA probe. A gold electrode array on a plastic plate was assembled with a thru-hole array where oligonucleotide probes were immobilized in the side wall of thru-hole array. The fabricated ECL DNA biosensor was used to detect several pathogens using ECL technique. A good specificity of single point mutations for hepatitis disease was obtained by using the DAPI-intercalated Ru(bpy)(3)(2+) ECL.