Biocatalytic Self‐Assembly of Supramolecular Charge‐Transfer Nanostructures Based on n‐Type Semiconductor‐Appended Peptides

The reversible in situ formation of a self‐assembly building block (naphthalenediimide (NDI)–dipeptide conjugate) by enzymatic condensation of NDI‐functionalized tyrosine ( NDI‐Y ) and phenylalanine‐amide ( F‐NH₂ ) to form NDI‐YF‐NH₂ is described. This coupled biocatalytic condensation/assembly approach is thermodynamically driven and gives rise to nanostructures with optimized supramolecular interactions as evidenced by substantial aggregation induced emission upon assembly. Furthermore, in the presence of di‐hydroxy/alkoxy naphthalene donors, efficient charge‐transfer complexes are produced. The dynamic formation of NDI‐YF‐NH₂ and electronic and H‐bonding interactions are analyzed and characterized by different methods. Microscopy (TEM and AFM) and rheology are used to characterize the formed nanostructures. Dynamic nanostructures, whose formation and function are driven by free‐energy minimization, are inherently self‐healing and provide opportunities for the development of aqueous adaptive nanotechnology.     

Hierarchical Organization of Ferrocene–Peptides

Hierarchical self‐assembly of disubstituted ferrocene (Fc)–peptide conjugates that possess Gly‐Val‐Phe and Gly‐Val‐Phe‐Phe peptide substituents leads to the formation of nano‐ and micro‐sized assemblies. Hydrogen‐bonding and hydrophobic interactions provide directionality to the assembly patterns. The self‐assembling behavior of these compounds was studied in solution by using ¹H NMR and circular dichroism (CD) spectroscopies. In the solid state, attenuated total reflectance (ATR) FTIR spectroscopy, single‐crystal X‐ray diffraction (XRD), powder X‐ray diffraction (PXRD), and scanning electron microscopy (SEM) methods were used. Spontaneous self‐assembly of Fc–peptides through intra‐ and intermolecular hydrogen‐bonding interactions induces supramolecular assemblies, which further associate and give rise to fibers, large fibrous crystals, and twisted ropes. In the case of Fc[CO‐Gly‐Val‐Phe‐OMe]₂ ( 1 ), molecules initially interact to form pleated sheets that undergo association into long fibers that form bundles and rectangular crystalline cuboids. Molecular offsets and defects, such as screw dislocations and solvent effects that occur during crystal growth, induce the formation of helical arrangements, ultimately leading to large twisted ropes. By contrast, the Fc–tetrapeptide conjugate Fc[CO‐Gly‐Val‐Phe‐Phe‐OMe]₂ ( 2 ) forms a network of nanofibers at the supramolecular level, presumably due to the additional hydrogen‐bonding and hydrophobic interactions that stem from the additional Phe residues.     

Structural Diversity in the Self‐Assembly of Pseudopeptidic Macrocycles

The self‐assembling abilities of several pseudopeptidic macrocycles have been thoroughly studied both in the solid (SEM, TEM, FTIR) and in solution (NMR, UV, CD, FTIR) states. Detailed microscopy revealed large differences in the morphology of the self‐assembling micro/nanostructures depending on the macrocyclic chemical structures. Self‐assembly was triggered by the presence of additional methylene groups or by changing from para to meta geometry of the aromatic phenylene backbone moiety. More interestingly, the nature of the side chain also plays a fundamental role in some of the obtained nanostructures, thus producing structures from long fibers to hollow spheres. These nanostructures were obtained in different solvents and on different surfaces, thus implying that the chemical information for the self‐assembly is contained in the molecular structure. Dilution NMR studies (chemical shift and self‐diffusion rates) suggest the formation of incipient aggregates in solution by a combination of hydrogen‐bonding and π–π interactions, thus implicating amide and aryl groups, respectively. Electronic spectroscopy further supports the π–π interactions because the compounds that lead to fibers show large hypochromic shifts in the UV spectra. Moreover, the fiber‐forming macrocycles also showed a more intense CD signature. The hydrogen‐bonding interactions within the nanostructures were also characterized by attenuated total‐reflectance FTIR spectroscopy, which allowed us to monitor the complete transition from the solution to the dried nanostructure. Overall, we concluded that the self‐assembly of this family of pseudopeptidic macrocycles is dictated by a synergic action of hydrogen‐bonding and π–π interactions. The feasibility and geometrical disposition of these interactions finally render a hierarchical organization, which has been rationalized with a proposal of a model. The understanding of the process at the molecular level has allowed us to prepare hybrid soft materials.     

Hydrogel Formation Using New L‐Lysine‐Based Low‐Molecular‐Weight Compounds with Positively Charged Pendant Chains

Low‐molecular‐weight compounds based on L ‐lysine with alkylpyridinium or ‐imidazolium groups have been synthesized and studied for their gelation behavior in H₂O. Most compounds formed gels below a concentration of 2.5 weight‐%, the pyridinium bromide 2a and the 1‐methyl‐1H‐imidazolium bromide 3 even at 0.1 weight‐%. The minimum gel concentration (MGC) necessary for hydrogelation increased with increasing length of the Lys N^α‐alkanoyl chain, but the gelation ability concomitantly decreased. Electron‐microscopic images demonstrated that these hydrogelators create a three‐dimensional network in H₂O by entanglement of self‐assembled nanofibers. A fluorescence study with 8‐anilinonaphthalene‐1‐sulfonic acid (ANS) proved that some hydrophobic aggregates are formed at hydrogelator concentrations below an MGC of less than 50 μM (0.004%). FT‐IR, ¹H‐NMR, and Fluorescence studies indicated that the driving forces for the self‐assembly into nanofibers are mainly hydrophobic interactions and H‐bonding between amide groups.     

Supramolecular Self‐Assembly of Histidine‐Capped‐Dialkoxy‐Anthracene: A Visible‐Light‐Triggered Platform for Facile siRNA Delivery

Supramolecular self‐assembly of histidine‐capped‐dialkoxy‐anthracene (HDA) results in the formation of light‐responsive nanostructures. Single‐crystal X‐ray diffraction analysis of HDA shows two types of hydrogen bonding. The first hydrogen bond is established between the imidazole moieties while the second involves the oxygen atom of one amide group and the hydrogen atom of a second amide group. When protonated in acidic aqueous media, HDA successfully complexes siRNA yielding spherical nanostructures. This biocompatible platform controllably delivers siRNA with high efficacy upon visible‐light irradiation leading up to 90 % of gene silencing in live cells.     

Effect of the Bulkiness of the End Functional Amide Groups on the Optical,Gelation, and Morphological Properties of Oligo(p‐phenylenevinylene) π‐Gelators

Herein, we describe the role of end functional groups in the self‐assembly of amide‐functionalized oligo(p‐phenylenevinylene) (OPV) gelators with different end‐groups. The interplay between hydrogen‐bonding and π‐stacking interactions was controlled by the bulkiness of the end functional groups, thereby resulting in aggregates of different types, which led to the gelation of a wide range of solvents. The variable‐temperature UV/Vis absorption and fluorescence spectroscopic features of gelators with small end‐groups revealed the formation of 1D H‐type aggregates in CHCl₃. However, under fast cooling in toluene, 1D H‐type aggregates were formed, whereas slow cooling resulted in 2D H‐type aggregates. OPV amide with bulky dendritic end‐group formed hydrogen‐bonded random aggregates in toluene and a morphology transition from vesicles into fibrous aggregates was observed in THF. Interestingly, the presence of bulky end‐group enhanced fluorescence in the xerogel state and aggregation in polar solvents. The difference between the aggregation properties of OPV amides with small and bulky end‐groups allowed the preparation of self‐assembled structures with distinct morphological and optical features.     

Chiral self‐discrimination of the enantiomers of α‐phenylethylamine derivatives in proton NMR

Two types of chiral analytes, the urea and amide derivatives of α‐phenylethylamine, were prepared. The effect of inter‐molecular hydrogen‐bonding interaction on self‐discrimination of the enantiomers of analytes has been investigated using high‐resolution ¹H NMR. It was found that the urea derivatives with double‐hydrogen‐bonding interaction exhibit not only the stronger hydrogen‐bonding interaction but also better self‐recognition abilities than the amide derivatives (except for one bearing two NO₂ groups). The present results suggest that double‐hydrogen‐bonding interaction promotes the self‐discrimination ability of the chiral compounds. Copyright © 2009 John Wiley & Sons, Ltd.     

Photoreversible Supramolecular Polymerisation and Hierarchical Organization of Hydrogen‐Bonded Supramolecular Co‐polymers Composed of Diarylethenes and Oligothiophenes

Diarylethene 1 equipped with two monotopic melamine hydrogen‐bonding sites and oligothiophene‐functionalized ditopic cyanurate (OTCA) were mixed in a nonpolar solvent to form AA‐BB‐type supramolecular co‐polymers (SCPs) bearing photoswitchable moieties in their main chains and extended π systems as side chains. UV/Vis, fluorescence, dynamic light scattering (DLS), TEM, and AFM studies revealed that the two functional co‐monomers formed flexible quasi‐one‐dimensional SCPs in solution that hierarchically self‐organized into helical nanofibers through H‐aggregation of the oligothiophene side chains. Upon irradiating the SCPs with UV light, a transition occurred from the H‐aggregated state to non‐aggregated monomeric oligothiophene side chains, as shown by spectroscopic studies, which indicates the formation of small oligomeric species held together only by hydrogen‐bonding interactions. TEM and AFM visualized unfolded fibrils corresponding to elongated single SCP chains formed upon removal of solvent. The helical nanofibers were regenerated upon irradiating the UVirradiated solution with visible light. These results demonstrated that the supramolecular polymerisation followed by hierarchical organization can be effectively controlled by proper supramolecular designs using diarylethenes and π‐conjugated oligomers.     

N‐Annulated Perylene Bisimides to Bias the Differentiation of Metastable Supramolecular Assemblies into J‐ and H‐Aggregates

The unique self‐assembling features of N‐annulated perylene bisimides (PBIs) 1 and 2 are reported. The stability of the aggregates of diester 1 , in which no H‐bonding interactions are operative, corroborates the significance of long‐range van der Waals and dipole–dipole electrostatic interactions in the construction of stable supramolecular assemblies. The incorporation of amide functional groups within the N‐annulated PBI in 2 stimulates pathway differentiation to achieve up to three J‐type aggregates and a fourth H‐type aggregate depending on the experimental conditions. The results presented demonstrate unprecedented levels of control over synthetic supramolecular self‐assembly and the rich differentiation that N‐annulated PBIs exhibit, opening the door to new, complex, functional supramolecular materials.     

From Nongelating to Gelating: Synthesis and Structural Self‐Assembling Property Relationships of a Homologous Series of Oligo(amide–triazole)s

A homologous series of oligo(amide–triazole)s (OAT) [ OAT‐CO₂H‐2 n and OAT‐COPrg‐(2 n +1) ] with an increasing number of primary amide (CONH) and triazole hydrogen‐bonding functionalities was prepared by an iterative synthetic procedure. It was found that their self‐assembly and thermoreversible gelation strength had a strong correlation to the number of hydrogen‐bonding moieties in the oligomers. There also existed a threshold value of the number of CONH units, above which all the oligomers became organogelators. Hence, oligomers with ≤4 CONH units are devoid of intermolecular hydrogen bonding and also non‐organogelating, whereas those that contain >4 CONH units show intermolecular association and organogelating properties. For the organogelators, the T_gel value increases monotonically with increasing number of CONH units. On the basis of FTIR measurements, both the CONH and triazole C? H groups were involved in the hydrogen‐bonding process. A mixed xerogel that consisted of a 1:1 weight ratio of two oligomers of different lengths ( OAT‐CO₂H‐6 and OAT‐CO₂H‐12 ) was found to show microphase segregation according to differential scanning calorimetry, thus indicating that oligomers that bear a different number of hydrogen‐bonding units exhibited self‐sorting to maximize the extent of intermolecular hydrogen bonding in the xerogel state.     

Rose‐Like Microstructures of Polyaniline by Using a Simplified Template‐Free Method under a High Relative Humidity

3‐D rose‐like microstructures of polyaniline (PANI), which are self‐assembled from 2‐D nanosheets consisted of 1‐D nanofibers, were synthesized by a template‐free method in the presence of ammonium peroxydisulfate (APS) as both oxidant and dopant under a high relative humidity of 80% for the first time. When the relative humidity increases from 25 to 80%, not only morphology of the micro/nanostructured PANI undergoes a change from 1‐D nanofibers to 2‐D nanosheets to 3‐D rose‐like microstructures, but also increase in crystallinity. It is proposed that a cooperation effect of the oriented water molecules at the vapor–water interface and difference in hydrogen bonding energies between the interface and the bulk induced by the relative high humidity results in the formation of the 3‐D rose‐like microstructures self‐assembled from 2‐D nanosheets. Moreover, the method reported may provide a simple approach for understanding self‐assembly of complex micro/nanostructures of PANI.

     

Hydrogen‐bonding‐aided synthesis of novel ladderlike organobridged polysiloxane containing side‐chain naphthyl groups

With a hydrogen‐bonding template, a novel soluble aryl amide‐bridged ladderlike polysiloxane, containing naphthyl as the side‐chain group, has been successfully synthesized via a stepwise coupling polymerization. It is proposed that the monomer, N,N′‐di(3‐naphthyldiethoxylsilyl‐propyl)‐[4,4′‐oxybis(benzyl amide)], prepared by Grignard and hydrosilylation reactions, undergoes self‐assembly first via amido hydrogen bonding and then via hydrolysis, followed by condensation under controlled reaction conditions to yield a high molecular weight, soluble, dark yellow polymer. The analytical results (Fourier transform infrared, ¹H NMR, ²⁹Si NMR, X‐ray diffraction, differential scanning calorimetry, and vapor pressure osmometry) show that the polymer possesses an ordered ladderlike architecture. © 2003 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 41: 636–644, 2003     

Reversible assembly of enantiomeric helical polymers: from fibers to gels

A novel class of stereocomplexes is described by the interaction of helically complementary poly(phenylacetylene)s (PPAs) carrying an α-methoxy-α-trifluoromethylphenylacetamide pendant group. The formation of the stereocomplex requires the presence of cis amide bonds on the external crest of the polymer to provide efficient cooperative supramolecular hydrogen bonding between matching enantiomeric helical structures. The interlocking of the chains gives rise to supramolecular fiber-like aggregates that, at higher concentrations, result in gels. The modification of the cis–trans amide conformation at the pendant groups allows the controlled formation and cleavage of the stereocomplex due to a dramatic change between the intermolecular and intramolecular hydrogen bond interactions.     

Self‐Assembly and Gelation of Poly(aryl ether) Dendrons Containing Hydrazide Units: Factors Controlling the Formation of Helical Structures

Self‐assembly of AB₂ and AB₃ type low molecular weight poly(aryl ether) dendrons that contain hydrazide units were used to investigate mechanistic aspects of helical structure formation during self‐assembly. The results suggest that there are three important aspects that control helical structure formation in such systems with acyl hydrazide/hydrazone linkage: i) J‐type aggregation, ii) the hydrogen‐bond donor/acceptor ability of the solvent, and iii) the dielectric constant of the solvent. The monomer units self‐assemble to form dimer structures through hydrogen‐bonding and further assembly of the hydrogen‐bonded dimers leads to macroscopic chirality in the present case. Dimer formation was confirmed by NMR spectroscopy and by mass spectrometry. The self‐assembly in the system was driven by hydrogen‐bonding and π–π stacking interactions. The morphology of the aggregates formed was examined by scanning electron microscopy, and the analysis suggests that aprotic solvent systems facilitate helical fibre formation, whereas introduction of protic solvents results in the formation of flat ribbons. This detailed mechanistic study suggests that the self‐assembly follows a nucleation–elongation model to form helical structures, rather than the isodesmic model.     

Poly(dimethylsiloxane)‐based polymer organogelators with L‐lysine derivatives as a organogelation‐causing segment

New poly(dimethylsiloxane)‐based polymer organogelators with L ‐lysine derivatives were synthesized on the basis of synthetically simple procedure, and their organogelation abilities were investigated. These polymer organogelators have a good organogelation ability and form organogels in many organic solvents. In the organogels, polymer gelators constructed a mesoporous structure with a pore size of about 1 μm formed by entanglement of the self‐assembled nanofibers. The L ‐lysine derivatives in the polymer gelators functioned as a gelation‐causing segment and the organogelation was induced by self‐assembly of the L ‐lysine segments through a hydrogen bonding interaction. © 2006 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 44: 3817–3824, 2006     

Peptide‐poly(2‐(dimethylamino)ethyl methacrylate) conjugates: Synthesis and aqueous/nonaqueous self‐aggregation into nanostructures of dendritic and spherical morphologies

Peptide–polymer conjugate consisting of a sequence‐defined tripeptide and poly(2‐(dimethylamino)ethyl methacrylate) (PDMAEMA) is synthesized by a simple “grafting from” atom transfer radical polymerization (ATRP) approach. The ATRP of PDMAEMA using peptide‐macroinitiator and CuBr/1,1,4,7,10,10‐hexamethyltriethylenetetramine system in anisole follows pseudo first order kinetics up to a conversion of about 25% within a time span of 125 min. The attachment of peptide moiety at the end of PDMAEMA chain is confirmed from MALDI‐TOF‐MS and circular dichroism analyses. The self‐assembly of as‐synthesized peptide‐PDMAEMA conjugate in organic solvents leads to the formation of spherical nanoparticles as observed through FESEM. Peptide‐PDMAEMA conjugate become soluble in water due to the protonation of the pendent —N(CH₃)₂ moiety of DMAEMA group of the conjugate. Owing to the amphiphilic nature of the protonated conjugate (peptide‐PDMAEMAH), it also undergoes self‐aggregation in water into nanostructures of various morphologies such as dendrite, small sphere and large sphere at pHs of 2, 8, and 10, respectively. Peptide‐PDMAEMA‐IBu conjugate obtained by the post‐modification of —N(CH₃)₂ moiety of DMAEMA group of the conjugate with n‐butylbromide also undergoes self‐aggregation into dendritic nanostructures in water. © 2017 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2017 , 55, 3286–3297     

Charge‐Transfer‐Assisted Supramolecular 1 D Nanofibers through a Cholesteric Structure‐Directing Agent: Self‐Assembly Design for Supramolecular Optoelectronic Materials

Self‐assembly of pyrene butyric acid (PBA) and 2,4,7‐trinitro‐9H‐fluoren‐9‐one (TNF) directed by a pyridine‐linked cholesterol unit resulted in the formation of a conducting material (1.9472×10^?4 S Cm^?1) due to the formation of 1 D nanofibers. X‐ray diffraction, IR, and atomic force microscopic (AFM) techniques were used to establish the mechanism of the self‐assembly of the multicomponent gels. Results indicate efficient charge transfer in the 1 D nanofibers, assisted by hydrogen bonding.     

Engineering the Ionic Self‐Assembly of Polyoxometalates and Facial‐Like Peptides

The self‐assembly behavior of polyoxometalates (PMs) and facial‐like cationic peptides carrying lysine residues were systematically investigated. Circular dichroism and UV/Vis spectra demonstrated that the multivalent electrostatic attractions between polyanionic PMs and short peptides with protonated lysine residues initiated the conformational transition of peptide molecules from random‐coil to β‐sheet state, and subsequently the co‐assembly. TEM and atomic force microscopy (AFM) measurements showed that uniform nanofibers formed with decreasing size of the PMs or increasing the intermolecular forces of the peptides, such as through hydrogen‐bonding, hydrophobic, and/or π–π interactions. Additionally, the stability of the nanostructures can be improved by rational suppression of the electrostatic repulsion of the shell peptides covering the surface of the nanostructures. These results provide new insight into understanding the ionic self‐assembly of peptides and PMs and controlling their final morphology.     

Synthon preference in a hydrated β‐resorcylic acid structure and its cocrystal with thymine

Multicomponent crystals or cocrystals play a significant role in crystal engineering, the main objective of which is to understand the role of intermolecular interactions and to utilize such understanding in the design of novel crystal structures. Molecules possessing carboxylic acid and amide functional groups are good candidates for forming cocrystals. β‐Resorcylic acid monohydrate, C₇H₆O₄·H₂O, (I), crystallizes in the triclinic space group P with one β‐resorcylic acid molecule and one water molecule in the asymmetric unit. The cocrystal thymine–β‐resorcylic acid–water (1/1/1), C₅H₆N₂O₂·C₇H₆O₄·H₂O, (II), crystallizes in the orthorhombic space group Pca2₁, with one molecule each of thymine, β‐resorcylic acid and water in the asymmetric unit. All available donor and acceptor atoms in (I) and (II) are utilized for hydrogen bonding. The acid and amide functional groups are well known for the formation of self‐complementary acid–acid and amide–amide homosynthons. In (I), an acid–acid homosynthon is observed, while in (II), an amide–acid heterosynthon is present. In (I), the β‐resorcylic acid molecule exhibits the expected intramolecular S(6) motif between the hydroxy and carbonyl O atoms, and an intermolecular R₂²(8) dimer motif between the carboxylic acid groups; only the former motif is observed in (II). The water solvent molecule in (I) propagates the discrete dimers into two‐dimensional hydrogen‐bonded sheets. In (II), thymine and β‐resorcylic acid molecules do not form self‐complementary amide–amide and acid–acid homosynthons; instead, a thymine–β‐resorcylic acid heterosynthon is observed. With the help of the water molecule, this heterosynthon is aggregated into a three‐dimensional hydrogen‐bonded network. The absence of thymine base pairing in (II) might be linked to the availability of additional functional groups and the preference of the donor and acceptor hydrogen‐bond combinations.     

Controlling the π‐Stacking Behavior of Pyrene Derivatives: Influence of H‐Bonding and Steric Effects in Different States of Aggregation

The performance of opto‐electronic devices built from low‐molecular‐weight dye molecules depends crucially on the stacking properties and the resulting coupling of the chromophoric systems. Herein we investigate the influence of H‐bonding amide and bulky substituents on the π‐stacking of pyrene‐containing small molecules in dilute solution, as supramolecular aggregates, and in the solid state. A set of four pyrene derivatives was synthesized in which benzene or 4‐tert‐butyl benzene was linked to the pyrene unit either through an ester or an amide. All four molecules form supramolecular H‐aggregates in THF solution at concentrations above 1×10^?4 mol L^?1. These aggregates were transferred on a solid support and crystallized. We investigate: the excimer formation rates within supramolecular aggregates; the formation of H‐bonds as well as the optical changes during the transition from the amorphous to the crystalline state; and the excimer to monomer fluorescence ratio in crystalline films at low temperatures. We reveal that in solution supramolecular aggregation depends predominantly on the pyrene chromophores. In the crystalline state, however, the pyrene stacking can be controlled gradually by H‐bonding and steric effects. These results are further confirmed by molecular modeling. This work bears fundamental information for tailoring the solid state of functional optoelectronic materials.