共查询到20条相似文献,搜索用时 15 毫秒
1.
Jiří Drábek Michaela Smolíková Ruslan Kalendar Fernando A. Lopes Pinto Pavel Pavloušek Karel Klepárník Ivo Frébort 《Electrophoresis》2016,37(23-24):3059-3067
Although the analysis of length polymorphism at STR loci has become a method of choice for grape cultivar identification, the standardization of methods for this purpose lags behind that of methods for DNA profiling in human and animal forensic genetics. The aim of this study was thus to design and validate a grapevine STR protocol with a practically useful level of multiplexing. Using free bioinformatics tools, published primer sequences, and nucleotide databases, we constructed and optimized a primer set for the simultaneous analysis of six STR loci (VVIi51, scu08vv, scu05vv, VVMD17, VrZAG47, and VrZAG83) by multiplex PCR and CE with laser‐induced fluorescence, and tested it on 90 grape cultivars. The new protocol requires subnanogram quantities of the DNA template and enables automated, high‐throughput genetic analysis with reasonable discriminatory power. As such, it represents a step toward further standardization of grape DNA profiling. 相似文献
2.
Endika Prieto‐Fernández Miriam Baeta Carolina Núñez María T. Zarrabeitia Rene J. Herrera Juan José Builes Marian M. de Pancorbo 《Electrophoresis》2016,37(12):1651-1658
Currently, two of the most widely used X‐chromosome STR (X‐STR) multiplexes are composed by ten (GHEP‐ISFG decaplex) and 12 markers (Investigator Argus X‐12 Kit). The number of markers included is a drawback for complex relative testing cases, likewise the large size of some amplicons difficult their application to degraded samples. Here, we present a new multiplex of 17 X‐STRs with the aim of increasing both the resolution power and forensic applicability. This newly proposed set includes the X‐STRs of the GHEP‐ISFG decaplex, four X‐STRs from the Investigator Argus X‐12 Kit, three of them also included in the decaplex, and six additional more. In order to ensure the allele designation, an allelic ladder was developed. The validation of the present multiplex was carried out according to the revised guidelines by the SWGDAM (Scientific Working Group on DNA Analysis Methods). A total of 488 unrelated individuals from four different continents were analyzed. The forensic efficiency evaluation showed high values of combined power of discrimination in males (≥0.999999996) and females (≥0.999999999999995) as well as combined paternity exclusion probabilities in trios (≥0.99999998) and duos (≥0.999996). The results presented herein have demonstrated that the new 17 X‐STR set constitutes a high‐resolution alternative to the current X‐STR multiplexes. 相似文献
3.
Maria Luisa A. Gonçalves Deusa Angélica da Mota Pinto Ana Maria R. F. Teixeira M. A. G. Teixeira 《Journal of Thermal Analysis and Calorimetry》2008,91(2):341-346
Dynamic kinetic analyses were performed on different Brazilian petroleum fractions by thermogravimetry. The data were treated
by a multiple heating rate methodology. The apparent activation energies for the light and middle fractions within the range
of 62–74 kJ mol−1 and for heavy distillation residues were within the range of 80–100 kJ mol−1 at lower conversions and 100–240 kJ mol−1 at higher conversions. The kinetic study can be a criterion for tells apart the main phenomena involved in the thermal behavior
of the refinery feedstock. 相似文献
4.
Abdulla Albastaki Mohammed Naji Reem Lootah Reem Almheiri Hanan Almulla Afra Alreyami Iman Almarri Zailiang Yu Yueke Zhang Chang Shu Rashed Alghafri 《Electrophoresis》2022,43(18-19):1911-1919
This article details the development of a single multiplex system amplifying 26 rapidly mutating Y-STR markers. A sequenced allelic ladder, constructed for calling alleles of all loci, is introduced. The multiplex system shows the ability to address the limitations of Y-STRs commercial kits in differentiating closely related males. The multiplex performed well in the prevalidation tests and showed great potential to be used in forensic casework. 相似文献
5.
The novel three-component Fe3O4/TiO2/Ag composite mircospheres were prepared via a facile chemical deposition route. The Fe3O4/TiO2 mircospheres were first prepared by the solvothermal method, and then Ag nanoparticles were anchored onto the out-layer of TiO2 by the tyrosine-reduced method. The as-prepared magnetic Fe3O4/TiO2/Ag composite mircospheres were applied as photocatalysis for the photocatalytic degradation of methylene blue. The results indicate that the photocatalytic activity of Fe3O4/TiO2/Ag composite microspheres is superior to that of Fe3O4/TiO2 due to the dual effects of the enhanced light absorption and reduction of photoelectron–hole pair recombination in TiO2 with the introduction of Ag NPs. Moreover, these magnetic Fe3O4/TiO2/Ag composite microspheres can be completely removed from the dispersion with the help of magnetic separation and reused with little or no loss of catalytic activity. 相似文献
6.
7.
Sara C. Zapico Krizia Crucet Aleksandra Antevska Rosalina Fernandez-Paradas Christina Burns Cassandra DeGaglia Douglas H. Ubelaker 《Electrophoresis》2021,42(1-2):122-125
Recovering appropriate evidence from crime scenes to identify the perpetrator, or in certain cases, the victim, is one of the main goals of forensic investigation. The current practice includes collection of objects from which “trace” or “touch” DNA may be retrieved. Contact lenses, worn by the perpetrator/victim, represent a potentially good source of DNA. This is based on their exposure to touch DNA and the release and regeneration of epithelial cells from the eye. This study takes these premises into account with the objective of analyzing the efficiency of human nuclear and mitochondrial DNA isolation from contact lenses. DNA was collected using a non-destructive technique (double-swab) and subsequently isolated using a silica-based methodology. Although DNA quantification was variable among subjects and contact lenses, it was sufficient to amplify some STRs and successfully sequence mtDNA. The findings from this research provide a proof-of-concept that it is possible to recover, isolate, amplify human nuclear DNA, and characterize mitochondrial DNA from contact lenses left at crime scenes. These results show the potential importance of recovering unusual items from crime scenes as a potential source of DNA to identify the victim and/or suspect. 相似文献
8.
NaI molecules predissociate after excitation with ultrashort pulses at a peak wavelength of 320 nm. In rare gas environments
at higher pressures the process of geminate recombination is likely to occur. We studied the dynamics of these processes under
various pressure conditions and for different collision partners. The calculations were performed within a three-dimensional
statistical model which simulates the NaI wave-packet dynamics with classical trajectories and the collisions via an instantaneous
hard-sphere scattering.
Received: 4 May 1998 / Accepted: 27 July 1998 / Published online: 28 September 1998 相似文献
9.
10.
用气相色谱-质谱和气相色谱-红外联用技术分析热裂解汽油C9馏分中的组成 总被引:6,自引:2,他引:6
采用气相色谱-质谱和气相色谱-红外联用技术对热裂解汽油C9馏分中的组分进行分离和定性分析。实验使用了50m聚甲基硅氧烷毛细管色谱柱,EI电离源,电离能70eV和10eV,红外光谱仪的检测器为MCT。通过分析确定了热裂解汽油C9馏分中52个化合物的结构。降低质谱的电离能有利于确定组分的分子量。质谱可以提供被测组分的裂解碎片离子和分子量的信息,红外在确定官能团和同分异构体时要优于质谱。两种联用技术的使用较好地解决了单一方法测定复杂混合物中组分结构所存在的缺陷。 相似文献
11.
Measurement of the length of DNA fragments plays a pivotal role in genetic mapping, disease diagnostics, human identification and forensic applications. PCR followed by electrophoresis is used for DNA length measurement of STRs, a process that requires labeled primers and allelic ladders as standards to avoid machine error. Sequencing‐based approaches can be used for STR analysis to eliminate the requirement of labeled primers and allelic ladder. However, the limiting factor with this approach is unsynchronized polymerization in heterozygous sample analysis, in which alleles with different lengths can lead to imbalanced heterozygote peak height ratios. We have developed a rapid DNA length measurement method using peptide nucleic acid and dideoxy dNTPs to “tailor” DNA templates for accurate sequencing to overcome this hurdle. We also devised an accelerated “dyad” pyrosequencing strategy, such that the combined approach can be used as a faster, more accurate alternative to de novo sequencing. Dyad sequencing interrogates two bases at a time by allowing the polymerase to incorporate two nucleotides to DNA template, cutting the analysis time in half. In addition, for the first time, we show the effect of peptide nucleic acid as a blocking probe to stop polymerization, which is essential to analyze the heterozygous samples by sequencing. This approach provides a new platform for rapid and cost‐effective DNA length measurement for STRs and resequencing of small DNA fragments. 相似文献
12.
Yu‐Dang Zhang Wen‐Juan Liu Tian‐Ju Wang Jiang‐Wei Yan Jing‐Feng Huang Wei‐An Du Jian‐Xin Guo Hong‐Dan Wang Yu‐Hong Zhang Ru‐Hua Zhou Xing Wei 《Electrophoresis》2014,35(14):2001-2007
X‐chromosomal STRs (X‐STRs) have been used as complements of autosomal STR application in recent years. In this work, we present population genetic data of 12 X‐STRs including DXS101, DXS10159, DXS10162, DXS10164, DXS6789, DXS7133, DXS7423, DXS7424, DXS8378, DXS981, GATA165B12, and GATA31E08 loci in a sample of 231 unrelated healthy individuals from the Hui ethnic group in Ningxia Hui Autonomous Region, China. Allelic frequencies of the 12 X‐STR loci and haplotypic frequencies of the reported linkage groups (DXS7424‐DXS101 and DXS10159‐DXS10164‐DXS10162) were investigated in the group, respectively. No STR loci showed significant deviations from the Hardy–Weinberg equilibriums and no linkage disequilibriums of pairwise loci were found after Bonferroni correction, respectively. A combined power of discrimination in female individuals was 0.999999999985 and that in male individuals was 0.99999967, respectively. The combined mean exclusion chance in deficiency cases, normal trios and duo cases were 0.999934, 0.995754, and 0.999796, respectively. Significant differences were observed from 0 to 8 loci, when making comparisons between the data of Hui ethnic group and previously reported data from other 16 populations. The results indicated the new panel of 12 X‐STR loci might be useful for forensic science application. 相似文献
13.
Photocatalytic reactions are governed by photogenerated charge carriers upon band gap excitation. Therefore, for better understanding of the mechanism, the dynamics of photocarriers should be studied. One of the attractive materials is TiO2, which has been extensively investigated in the field of photocatalysis. This review article summarizes our recent works of time-resolved visible to mid-IR absorption measurements to elucidate the difference of anatase, rutile, and brookite TiO2 powders. The distinctive photocatalytic activities of these polymorphs are determined by the electron-trapping processes at the defects on powders. Powders are rich in defects and these defects capture photogenerated electrons. The depth of the trap is crystal phase dependent, and they are estimated to be < 0.1 eV, ∼0.4 eV and ∼0.9 eV for anatase, brookite, and rutile, respectively. Electron trapping reduces probability to meet with holes and then elongate the lifetime of holes. Therefore, it works negatively for the reaction of electrons but positively works for the reaction of holes. In the steady-state reactions, both electrons and holes should be consumed. Hence, the balance between the positive and negative effects of defects determines the distinctive photocatalytic activities of anatase, rutile, and brookite TiO2 powders. 相似文献
14.
V. F. Kharlamov Sh. L. Izmailov N. Ph. Vasilyev 《Reaction Kinetics and Catalysis Letters》1997,60(1):107-112
Atoms trapped from the vapor phase in the preadsorbed state were found to provide the catalytic activity of semiconductors
in the heterogeneous recombination of hydrogen atoms. 相似文献
15.
Faten Makki‐Rmida Arwa Kammoun Nadia Mahfoudh Adnene Ayadi Abdullah Ahmed Gibriel Bakhta Mallek Leila Maalej Zouheir Hammami Samir Maatoug Hafedh Makni Saber Masmoudi 《Electrophoresis》2015,36(23):2908-2913
Y chromosome STRs (Y‐STRs) are being used frequently in forensic laboratories. Previous studies of Y‐STR polymorphisms in different groups of the Tunisian population identified low levels of diversity and discrimination capacity (DC) using various commercial marker sets. This definitely limits the use of such systems for Y‐STRs genotyping in Tunisia. In our investigation on South Tunisia, 200 unrelated males were typed for the 12 conventional Y‐STRs included in the PowerPlex® Y System. Additional set of nine noncore Y‐STRs including DYS446, DYS456, DYS458, DYS388, DYS444, DYS445, DYS449, DYS710, and DYS464 markers were genotyped and evaluated for their potential in improving DC. Allele frequency, gene diversity, haplotype diversity (HD), and DC calculation revealed that DYS464 was the most diverse marker followed by DYS710 and DYS449 markers. The standard panel of 12 Y‐STRs (DC = 80.5%) and the nine markers were combined to obtain DC of 99%. Among the 198 different haplotypes observed, 196 haplotypes were unique (HD = 99.999). Out of the nine noncore set, six Y‐STRs (DYS458, DYS456, DYS449, DYS710, DYS444, and DYS464) had the greatest impact on enhancing DC. Our data provided putative Y‐STRs combination to be used for genetic and forensic applications. 相似文献
16.
《Arabian Journal of Chemistry》2014,7(3):327-334
The proteins of SMC family are characterized by having Walker A and B sites. The Escherichia coli RecN protein is a prokaryotic member of SMC family that involved in the induced excision of Tn10 and the repair of the DNA double strand breaks. In this work, the Walker A nucleotide binding site of the E. coli RecN protein was mutated by changing the highly conserved lysine residue 35 to the aspartic acid (D), designated as recNK35D. Reverse genetics was utilized to delete the entire recN gene (ΔrecN108) or introduce the recNK35D gene into the E. coli chromosomal DNA. The recNK35D cells showed decrease in the frequency of excision of Tn10 from gal76::Tn10 after treatment with mitomycin C compared to recN+ cells. The ΔrecN108 cells showed an un-induced increase in the frequency of Tn10 excision from gal76::Tn10 in rec+ background while, recBC sbcBC ΔrecN108 cells are completely deficient in Tn10 excision. The recombination proficiency is reduced in cells carrying recBC sbcBC cells in addition recNK35D mutation. We observed that the Walker A nucleotide binding site is important for the RecN protein. Strains that deleted recN gene are recombination deficient and more sensitive to mitomycin C than strains carrying recNK35D. 相似文献
17.
Emiliano Giardina Cristina Peconi Raffaella Cascella Cecilia Sinibaldi Valeria Foti Cuzzola Anna Maria Nardone Placido Bramanti Giuseppe Novelli 《Electrophoresis》2009,30(11):2008-2011
Uniparental disomy (UPD) describes the inheritance of both homologues of a pair of chromosomes from only one parent. This condition is often caused by nondisjunction events during meiosis. UPD has been reported as a rare cause of the autosomal recessive disorder and aberrant expression of imprinted genes that are expressed from only one parental allele, either maternal or paternal. Maternal and/or paternal UPD for chromosome 7 is the most frequently observed UPD after UPD15. Here we developed and validated, for the first time, an effective, CE‐based method for a rapid and economic detection based on two‐fluorescent STR multiplexes. 相似文献
18.
The likelihood approach is common in linkage analysis of large extended pedigrees. Various peeling procedures, based on the conditional independence of separate parts of a pedigree, are typically used for likelihood calculations. A peeling order may significantly affect the complexity of such calculations, particularly for pedigrees with loops or when many pedigrees members have unknown genotypes. Several algorithms have been proposed to address this problem for pedigrees with loops. However, the problem has not been solved for pedigrees without loops until now. In this paper, we suggest a new graph theoretic algorithm for optimal selection of peeling order in zero-loop pedigrees with incomplete genotypic information. It is especially useful when multiple likelihood calculation is needed, for example, when genetic parameters are estimated or linkage with multiple marker loci is tested. The algorithm can be easily introduced into the existing software packages for linkage analysis based on the Elston-Stewart algorithm for likelihood calculation. The algorithm was implemented in a software package PedPeel, which is freely available at http://mga.bionet.nsc.ru/nlru/. 相似文献
19.
20.
Fen Luo Liduo Wang Beibei Ma Yong Qiu 《Journal of photochemistry and photobiology. A, Chemistry》2008,197(2-3):375-381
In this study, dye-sensitized TiO2 electrodes were immersed into a solution of aluminum isopropoxide and after hydrolysis quasi-solid-state solar cells were fabricated. The interaction between the dye and the resulting Al2O3 overlayer was investigated by ultraviolet–visible (UV–vis) spectrum, Fourier transform infrared (FTIR) spectrum and X-ray photoelectron spectrum (XPS). The current density–voltage (I–V) characteristics showed that the overlayer increased the photovoltage and decreased the photocurrent under low intensity irradiation, and increased both the photovoltage and photocurrent under AM 1.5 irradiation. The Al2O3 overlayer at the dye/electrolyte interface resulted in a 28% improvement in overall photo-to-electrical conversion efficiency from 2.60 to 3.32%. Dark current measurements showed that Al2O3 acted as an insulator barrier to retard recombination between the TiO2 and dye/quasi-solid-state electrolyte interface. Without encapsulation, dye-sensitized solar cells with Al2O3 coating after sensitization also exhibited improved stability compared to cells without coating. 相似文献