Sample handling in surface sensitive chemical and biological sensing: A practical review of basic fluidics and analyte transport

This paper gives an overview of the advantages and associated caveats of the most common sample handling methods in surface-sensitive chemical and biological sensing. We summarize the basic theoretical and practical considerations one faces when designing and assembling the fluidic part of the sensor devices. The influence of analyte size, the use of closed and flow-through cuvettes, the importance of flow rate, tubing length and diameter, bubble traps, pressure-driven pumping, cuvette dead volumes, and sample injection systems are all discussed. Typical application areas of particular arrangements are also highlighted, such as the monitoring of cellular adhesion, biomolecule adsorption–desorption and ligand–receptor affinity binding. Our work is a practical review in the sense that for every sample handling arrangement considered we present our own experimental data and critically review our experience with the given arrangement. In the experimental part we focus on sample handling in optical waveguide lightmode spectroscopy (OWLS) measurements, but the present study is equally applicable for other biosensing technologies in which an analyte in solution is captured at a surface and its presence is monitored. Explicit attention is given to features that are expected to play an increasingly decisive role in determining the reliability of (bio)chemical sensing measurements, such as analyte transport to the sensor surface; the distorting influence of dead volumes in the fluidic system; and the appropriate sample handling of cell suspensions (e.g. their quasi-simultaneous deposition). At the appropriate places, biological aspects closely related to fluidics (e.g. cellular mechanotransduction, competitive adsorption, blood flow in veins) are also discussed, particularly with regard to their models used in biosensing.     

Molecular tubes for lipid sensing: tube conformations control analyte selectivity and fluorescent response

Two fluorescent sensors for lipids have been prepared and tested for detection of a number of hydrophobic compounds of varying shape and size. The data suggest that the two sensors have a different mode of fluorescent response. Yet, the two sensors are only different in the bridging group--one having a flexible amide and one having a rigid allyl bridge. The fluorescence data are explained based on a difference in conformation of the two sensors in aqueous solution.     

Boronic acid building blocks: tools for sensing and separation

In this feature article the use of boronic acids to monitor, identify and isolate analytes within physiological, environmental and industrial scenarios is discussed. Boronic acids recognise diol motifs through boronic ester formation and interact with anions generating boronates, as such they have been exploited in sensing and separation protocols for diol appended molecules such as saccharides and anions alike. Therefore robust molecular sensors with the capacity to detect chosen molecules selectively and signal their presence continues to attract substantial attention, and boronic acids have been exploited with some success to monitor the presence of various analytes. Reversible boronic acid-diol interactions have also been exploited in boron affinity chromatography realising new separation domains through the same binding events. Boronic acid diol and anion interactions pertaining to sensing and separation are surveyed.     

A collaborative environment for developing and validating predictive tools for protein biophysical characteristics

The exchange of information between experimentalists and theoreticians is crucial to improving the predictive ability of theoretical methods and hence our understanding of the related biology. However many barriers exist which prevent the flow of information between the two disciplines. Enabling effective collaboration requires that experimentalists can easily apply computational tools to their data, share their data with theoreticians, and that both the experimental data and computational results are accessible to the wider community. We present a prototype collaborative environment for developing and validating predictive tools for protein biophysical characteristics. The environment is built on two central components; a new python-based integration module which allows theoreticians to provide and manage remote access to their programs; and PEATDB, a program for storing and sharing experimental data from protein biophysical characterisation studies. We demonstrate our approach by integrating PEATSA, a web-based service for predicting changes in protein biophysical characteristics, into PEATDB. Furthermore, we illustrate how the resulting environment aids method development using the Potapov dataset of experimentally measured ΔΔG_fold values, previously employed to validate and train protein stability prediction algorithms.     

Optical fibre gratings as tools for chemical and biochemical sensing

Optical fibre gratings have recently been suggested as optical platforms for chemical and biochemical sensing. On the basis of the measurement of refractive index changes induced by a chemical and biochemical interaction in the transmission spectrum along the fibres, they are proposed as a possible alternative to the other label-free optical approaches, such as surface plasmon resonance and optical resonators. The combination of the use of optical fibres with the fact that the signal modulation is spectrally encoded offers multiplexing and remote measurement capabilities which the other technology platforms are not able to or can hardly offer. The fundamentals of the different types of optical fibre gratings are described and the performances of the chemical and biochemical sensors based on this approach are reviewed. Advantages and limitations of optical fibre gratings are considered, with a look at new perspectives for their utilization in the field.     

Electrokinetic analyte transport assay for alpha-fetoprotein immunoassay integrates mixing, reaction and separation on-chip

A rapid and highly sensitive CE immunoassay method integrating mixing, reaction, separation, and detection on-chip is described for the measurement of alpha-fetoprotein (AFP), a liver cancer marker in blood. Antibody-binding reagents, consisting of 245-bp DNA coupled anti-AFP WA1 antibody (DNA-WA1) and HiLyte dye-labeled anti-AFP WA2 antibody (HiLyte-WA2), and AFP-containing sample were filled into adjacent zones of a chip channel defined by the laminar flow lines of the microfluidic device using pressure-driven flow. The channel geometry was thus used to quantitatively aliquot the reagents and sample into the chip. DNA-WA1 was electrokinetically concentrated in the channel and sequentially transported through the AFP-sample zone and HiLyte-WA2 zone by ITP in such a manner that the AFP sandwich immune complex formation took place in the sample and HiLyte-WA2 zones. The sandwich AFP immune complex was then detected by LIF after CGE in a separation channel that was arranged downstream of the reaction channel. AFP was detected within 136 s with a detection sensitivity of 5 pM. The on-chip immunoassay described here, applying ITP concentration, in-channel reaction, and CGE separation, has the potential of providing a rapid and sensitive method for both clinical and research applications.     

Optical sensing based on analyte recognition by enzymes,carriers and molecular interactions

Despite the tremendous variety of methods suitable for sensing applications, we face the fact that chemical sensors displaying sensitivity, selectivity and reversibility are still scarce and are mostly confined to low-molecular-weight species. Obviously, it is not the lack of optical (or other) transduction methods that limit the performance of present day sensor desingns, but rather the insufficient selectivity of the recognition process, particularly in the field of sensors for organic and bioorganic species. The use of enzymes, ion carriers and natural or synthetic receptor/carriers which can under go specific interactions with the species to be recognized (such as through hydrogen bonding or charge-transfer interaction) can result in specific recognition and, consequently, sensing. Examples for optical sensing schemes for clinically or biologically important species including enzyme substrates, metabolites, drugs, alkali and ammonium ions and other will be given. In enzyme-based sensors various options exist: depending on which species is immobilized, assays for substrates (such as glucose, ethanol, lactate or creatine), enzymes (such as esterases) or inhibitors (such as organophosphates) can be designed. In addition, the intrinsic optical properties of certain enzymes, coenzymes or metabolites can be utilized for sensing purposes, a fact that presents an interesting alternative to enzyme sensors with chemical transducers.Notwithstanding the selectivity of biocatalytic sensors, their stability and sensitivity is moderate. Bioorganic synthetic molecules which can recognize and reversibly bind other species offer an attractive alternative, particularly in terms of stability. However, quite a different situation is found in such cases because receptors, in contrast to enzymes, do not “digest” their substrates. Hence, while the steady-state response in enzyme-based sensors is a result of kinetic equilibration, substrate binding in non-metabolizing receptors results in thermodynamic equilibration. However, most existing receptors (except antibodies) lack the unique specificity of enzymes. On the other side, new bioorganic molecules and stable receptor/carriers along with polymer materials of proper permeation selectivity can help to overcome current limitations of protein-based systems. Neutral ion carriers, which may be considered as ion receptors, are a useful example of sometimes highly specific recognition/carrier molecules with excellent stability. Unfortunately, no receptor /carrier molecules of similar specificity do exist yet for most other organic and clinical parameters of interest. There is an obvious need for new and stable molecules suitable for specific recognition of low-molecular weight organic species.We will report on the use of such new receptor/carrier molecules, the respective sensor materials, and how the process of recognition can be coupled to optical transduction. Such receptors/carriers also allow other kinds of discriminations: if, for instance, it is enantio-selective (i.e. preferably binds one species out of a pair of optical isomers), a fairly specific recognition of enantiomers of biogenic amines (such as some drugs and biogenic amines) will become possible. Specific examples will also be given of new types of sensors based on recognition by charge-transfer interaction, through-space interaction and hydrogen bonding, with fair specificity for thiamine, penicilline, nitrate, salicylate and cholic acids. Finally, current problems and the significant challenges for sensors research in the 1990s will be discussed.     

Monitoring automotive oil degradation: analytical tools and onboard sensing technologies

Engine oil experiences a number of thermal and oxidative phases that yield acidic products in the matrix consequently leading to degradation of the base oil. Generally, oil oxidation is a complex process and difficult to elucidate; however, the degradation pathways can be defined for almost every type of oil because they mainly depend on the mechanical status and operating conditions. The exact time of oil change is nonetheless difficult to predict, but it is of great interest from an economic and ecological point of view. In order to make a quick and accurate decision about oil changes, onboard assessment of oil quality is highly desirable. For this purpose, a variety of physical and chemical sensors have been proposed along with spectroscopic strategies. We present a critical review of all these approaches and of recent developments to analyze the exact lifetime of automotive engine oil. Apart from their potential for degradation monitoring, their limitations and future perspectives have also been investigated.     

Electric field control and analyte transport in Si/SiO2 fluidic nanochannels

This article presents an analysis of the electric field distribution and current transport in fluidic nanochannels fabricated by etching of a silicon chip. The channels were overcoated by a SiO2 layer. The analysis accounts for the current leaks across the SiO2 layer into the channel walls. Suitable voltage biasing of the Si substrate allows eliminating of the leaks or using them to modify the potential distribution of the fluid. Shaping the potential in the fluid can be utilized for solute focusing and separations in fluidic nanochannels.     

A Eu/Gd-mixed metal-organic framework for ultrasensitive physiological temperature sensing

A stable and biocompatible MOF-based thermometer utilizing back energy transfer has been developed, which exhibits ultrasensitive temperature sensing performance in the physiological temperature range.     

Magnetic nanoparticles in microfluidic and sensing: From transport to detection

Superparamagnetic nanoparticles are attracting significant attention. Therefore, being explored in microsystems for a wide range of applications. Typical examples include lab-on-a-chip and microfluidics for synthesis, detection, separation, and transportation of different bioanalytes, such as biomolecules, cells, and viruses to develop portable, sensitive, and cost-effective biosensing systems. Particularly, microfluidic systems incorporated with magnetic nanoparticles and, in combination with magnetoresistive sensors, shift diagnostic and analytical methods to a microscale level. In this context, nanotechnology enables the miniaturization and integration of a variety of analytical functions in a single chip for manipulation, detection, and recognition of bioanalytes reliably and flexibly. In consideration of the above, recent development and benefits are elaborated herein to discuss the role of magnetic nanoparticles inside the microchannels to design highly efficient disposable point-of-care applications from transportation to the detection of bioanalytes.     

Nonlinear optical metal-organic frameworks for ratiometric temperature sensing in physiological range

The precise and real-time sensing of the temperature within the physiological range is of great significance in biology and medicine. Here, a Zn-based metal-org...     

Calix[4]phyrin based redox architectures: towards new molecular tools for electrochemical sensing

New redox active molecular macrocyclic architectures characterized by a direct connection between dipyrrin, tripyrrin and ferrocenyl fragments have been synthesized and characterized. Contrarily to fully conjugated porphyrins, in which four pyrrole moieties contribute to the overall aromatic pi-electronic system and behave as a unique electroactive species, calixphyrins can be regarded as an assembly of independent redox active pyrrole and conjugated oligopyrrole fragments linked through sp(3) hybridized meso carbon atoms. The disruption of the conjugation pathway not only multiplies the number of redox centres throughout the molecule but also leads to a large variety of molecular architectures with specific physico-chemical properties. These novel ferrocene containing hybrid macrocycles exhibit especially attractive electronic and structural features suited for use as molecular sensing tools. An efficient voltammetric sensing of exogenic electron rich anionic species could especially be performed using a metallo-calix[4]phyrin-(1.1.1.1) through the displacement of the labile axial binding site, the perturbation of the Fc(0/+) redox couple being directly related to complexed species features.     

Insights into analyte electrolysis in an electrospray emitter from chronopotentiometry experiments and mass transport calculations

Insights into the electrolysis of analytes at the electrode surface of an electrospray (ES) emitter capillary are realized through an examination of the results from off-line chronopotentiometry experiments and from mass transport calculations for flow through tubular electrodes. The expected magnitudes and trends in the interfacial potential in an ES emitter under different solution conditions and current densities, using different metal electrodes, are revealed by the chronopotentiometry data. The mass transport calculations reveal the electrode area required for complete analyte electrolysis at a given volumetric flow rate. On the basis of these two pieces of information, the design of ES emitters that may maximize and those that may minimize analyte electrolysis during ES mass spectrometry are discussed.     

Focal length variability and protein leakage as tools for measuring photooxidative damage to the lens

Hypericin is the ingredient used to standardize the popular over-the-counter antidepressant medication St. John's Wort. Because hypericin readily produces singlet oxygen and other excited state intermediates, it is a very efficient phototoxic agent in the eye that can potentially induce the development of the cataract photooxidative mechanism. Hypericin absorbs in the UV and visible ranges, binds to the lens crystallins (alpha, beta and gamma) and damages these proteins through a photooxidative mechanism. Effects were measured previously using fluorescence, UV and mass spectrometry. We report here two additional methods to monitor lens damage: (1) measuring focal length variability using a ScanTox instrument and (2) measuring protein leakage from the damaged lens. Because nonenzymic glycation results in free radical production, we chose to use elevated glucose concentrations as a convenient model for studying oxidative stress. To compare and contrast photooxidative damage against oxidative damage to the lens, we also measured the focal length variability and protein leakage induced by the presence of elevated glucose concentrations. We found that the total accumulated protein leakage was positively correlated (r = 0.9) with variability in focal length. Lenses treated with hypericin and irradiated with UVB had an increase in focal length variability as compared with the lenses that were only UVB-irradiated. Lenses without UVB irradiation had much lower focal length variability than irradiated lenses. For non-hypericin-treated lenses, UVB-irradiated lenses had a larger variability (4.58 mm) than the unirradiated lenses (1.78 mm). The lenses incubated in elevated glucose concentrations had a focal length variability (3.23 mm) equivalent to that of the unirradiated hypericin-treated lenses (3.54 mm). We conclude that photooxidative damage by hypericin results in changes in the optical properties of the lens, protein leakage and finally cataract formation. In contrast to this, high concentrations of glucose induced protein leakage but not changes in optical properties or the opacity associated with a cataract. This work provides further evidence that people should protect their eyes from intense sunlight when taking St. John's Wort.     

Fast,efficient capillary electrophoresis method for measuring nucleotide degradation and metabolism

Oxolinic acid and flumequine were analysed by reversed-phase liquid chromatography after extraction from the sample matrix with dichloromethane and partitioning with NaOH. The detection system consisted of a fast-scanning fluorescence detector, which provides the full spectra of the eluting peaks and can thus be used to confirm the identity of analytes. Determination was performed by partial least squares (PLS) and three-way PLS over the three-dimensional data, i.e. fluorescence intensity versus retention time and excitation wavelength. In both cases, similar results, with prediction errors around 4%, were obtained. The method was successfully applied to the analysis of salmon, pork and chicken muscle spiked up to 300 ng g(-1).     

Smart nano-architectures as potential sensing tools for detecting heavy metal ions in aqueous matrices

The discharge of heavy metal ions into water resources as a result of human activities has become a global issue. Contamination with heavy metal ions poses a major threat to the environment and human health. Therefore, there is a dire need to probe the presence of heavy metal ions in a more selective, facile, quick, cost-effective and sensitive way. Conventional sensors are being utilized to sense heavy metal ions; however, various challenges and limitations like interference, overlapping of oxidation potential, selectivity and sensitivity are associated with them that limit their in-field applicability. Hence, nanomaterial based chemical sensors have emerged as an alternative substitute and are extensively employed for the detection of heavy metal ions as a potent analytical tool. The incorporation of nanomaterials in sensors increases their sensitivity, selectivity, portability, on-site detection capability and device performance. Nanomaterial based electrodes exhibit enhanced performance because surface of electrode at nano-scale level offers high catalytic potential, large active surface area and high conductivity. Therefore, this review addresses the recent progress on chemical sensors based on different nanomaterials such as carbon nanotubes (CNTs), metal nanoparticles, graphene, carbon quantum dots and nanocomposites for sensing heavy metals ions using different sensing approaches. Furthermore, various types of optical sensors such as fluorescence, luminescence and colorimetry sensors have been presented in detail.     

New tools for molecular imaging of redox metabolism: development of a fluorogenic probe for 3 alpha-hydroxysteroid dehydrogenases

A new fluorogenic substrate was developed for 3alpha-hydroxysteroid dehydrogenases (3alpha-HSD), including the human enzymes implicated in important physiological functions (androgen deactivation, neurosteroid activation). While ketone 5 is nonfluorescent, the corresponding alcohol exhibits high fluorescence with emission maximum at 510 nm, thus constituting a redox optical switch. This study began with a chemical concept of a ketone-alcohol optical switch which guided the synthesis of a focused array of compounds. Subsequently, seven compounds were selected (1-7) on the basis of their optical and chemical (stability) properties and were submitted to a screen against a panel of dehydrogenase enzymes. Probe 5 was found to be highly selective for bacterial, rat, and human 3alpha-HSD enzymes. The kinetic parameters were obtained for human 3alpha-HSD enzyme (type 2 isozyme, AKR 1C3; Km = 2.5 muM, kcat = 8.2 min-1). Remarkably, comparison to 5alpha-dihydrotestosterone (5alpha-DHT, Km = 26 muM, kcat = 0.25 min-1, Figure 4), a likely physiological substrate in prostate, revealed that synthetic probe 5 is in fact a far better substrate for this enzyme. Structure 5 represents an exciting lead for the development of a redox imaging probe.     

Parameterising matrix-assisted laser desorption/ionisation (MALDI): strategy for matrix—analyte selection and effect of radical co-additives on analyte peak intensities

Dihydroxybenzoic acid (DHB) analogues substituted at the 5-position can act as UV matrices at a wavelength of 337 nm, even when their absorption maxima are shifted past this particular wavelength.Modification of a matrix with a chiral ligand γ-(3-carboxy-4-hydroxy-anilide) (GCA) allowed it to differentiate between chiral isomers of tryptophan and also gave different intensities for glucose isomers, including structural dimers of glucose (cellobiose and maltose).An analogue that had one free hydroxyl group at the 2-OH position and a modification at the 5-position (MY10) gave protonated substance P (SP, analyte) peaks, similar in intensity to the not derivatised parent 2,5-dihydroxybenzoic acid indicating that the 5-OH position is not an important structural component.Another analogue that resembled a ‘dendrimeric’ structure of DHB (M552), also acted as a matrix, although its absorption maxima was at 552 nm suggesting the possibility of it being used at other wavelengths in addition to 337 nm.The DHB radical was complexed to a nitrone ‘spin-trap’. On complexion, the peptide (SP) peak intensity decreased. Addition of either radical initiators, such as 2,2-azobis(iso-butyronitrile) AIBN and tert-butylperoxide, or other radicals such as 2,2,6,6-tetramethyl-1-piperidinyloxy free radical (TEMPO) gave rise to higher analyte peak intensities for [SP+Na]⁺.It is thought that the DHB neutral radical is an intermediary in the protonation of the analyte. The photo-fragments of DHB, specifically the m/z 137 species, may also take part in proton transfer since possible mass analogues (hydroquinone, (deoxy)benzoin) can lead to analyte enhancement. Stabilization of or an increase in the matrix radical can also lead to analyte signal enhancement.