分子陀螺的设计、合成与组装

近来,科学家设计和合成了系列分子水平的陀螺。类似于儿童的玩具陀螺仪,这种分子陀螺由一个转子、一个定子框架和连接定子和转子的轴组成。定子框架通过自身的刚性结构为中心转子的转动提供足够的内在自由度,得以对内部的转子实施保护。并使得分子陀螺成为一个理想的分子转子。当转子上有偶极距时,则可能在外来电、磁、光的刺激下进行定向转动,成为分子马达。化学家们通过X射线晶体衍射技术、动态核磁技术、理论计算化学、热力学分析等方法表征了分子陀螺的各种特征,并积极探索其潜在的应用价值。本文着重介绍分子陀螺,以及超分子陀螺仪的发展历史以及研究进展。     

从分子构造到分子构型和分子构象（中）

我们从(上)文看到,化学家们最初认为物质的性质只决定于物质的分子组成,后来逐渐认识到物质的性质除决定于物质的分子组成外,还决定于分子构造.     

从分子构造到分子构型和分子构象（上）

分子构造(constitution)是指分子中原子相互联结的方式和次序,过去长期以来称为分子结构((structure),根据国际纯粹和应用化学联合会的建议,改为“构造”。“结构”一词应用在广泛的范围,例如物质结构、原子的电子结构等等。     

从分子构造到分子构型和分子构象（下）

范特霍夫和列贝尔分别各自提出碳原子的四个价键指向一个正四面体的四个顶点概念确立后,1885年德国化学家拜尔(Baeyer,Adolphvon 1835-1917)发表价键的张力学说。他根据碳原子四个价键的正四面体模型,任何两个价键之间的正常角度应当是109o28',如图I所示。     

卟啉超分子化合物在分子器件中的应用

分子电子器件已成为近年来的一个研究热点，卟啉类化合物因为光敏性好、性能稳定、易于修饰等优点成为分子器件研究的理想模型化合物。本文着重介绍了它在分子器件中的最新应用进展。     

基于C=O…HN分子间氢键的超分子液晶研究进展

基于C=O…HN的分子间氢键能够自组装形成具有精确分子排列和很好稳定性的有序结构,在设计构造液晶功能材料方面具有重要的不可替代的地位.分子形状是设计小分子热致液晶的一个主要考虑因素,它对液晶态的结构有至关重要的影响.以分子形状与液晶态相互关系为主线,重点介绍了目前文献报道的基于C=O…HN分子间氢键的盘状和楔形分子形成液晶的研究进展,以期为新型液晶材料的分子设计提供一些借鉴.     

分子调控的概念及其意义

在分子识别的基础之上提出了分子调控的新概念，指出分子调控是外界因素对分子某些性质的指令性干预，是超分子体系所持有的功能，通过这种调控作用，可以有意识、有目的地控制分子的行为，并列举若干实例加以说明。     

分子识别在分析化学中的应用

本文概述了分子模板理论的产生和发展，总结了分子模板技术在分析化学领域中的应用和发展趋势，同时对分子印渍技术的理论进行概述，并指出分子印渍技术在分析化学领域中的应用和发展情况，阐述了分子模板和分子印渍技在分子识别分析方面的应用前景，其将为各种物质的超微量分析提供更加讯捷，准确，方便的分析方法。     

药物头孢氨苄分子模板聚合物水中结合性质的研究

采用分子模板技术合成了以头孢氨苄为模板分子以三氟甲基丙烯酸和４－乙烯基吡啶同时为功能单体的分子模板聚合物。将得到的棒状聚合物研磨过筛后,运用平衡结合实验研究了头孢氨苄分子模板聚合物的结合性质,Ｓｃａｔｃｈａｒｄ分析表明,在所研究的浓度范围内,在聚合物中形成了两类不同的结合位点。头孢氨苄分子模板聚合物与其化学组成相同的非模板聚合物相比,有很高的结合容量。底物选择性实验表明,与其它结构相似的药物相比,     

分子逻辑器件研究进展

分子器件具有尺寸小、设计合成可控、存储量大、反应速度快、人工智能等诸多优点,是当今化学、物理和材料等领域研究最为重要的一个交叉领域.综述了近些年来分子逻辑器件领域的研究进展.介绍了各种类型的分子逻辑门、半(加)减法器、分子逻辑线路以及DNA分子和固态分子计算.最后提出了分子器件存在的问题并展望了其应用前景.     

A Modiˉed Molecular Structural Mechanics Method for Analysis of Carbon Nanotubes

A modified molecular structural mechanics method, based on molecular mechanics and similar to the finite element method, was developed. The energy of a system was expressed by the force field functions of the molecular mechanics. Under the small deformation assumption and by the principle of minimum potential energy, the system function was established. The properties of tension and bending of single-walled carbon nanotubes were analyzed. The Young's modulus is about 0.36 TPa nm, which agrees perfectly with the results of previous analysis by other researchers. It is found, for the first time, that the Young's moduli, for Zigzag nanotubes, are different from each other when the system energy was expressed as the sum of two or three individual energy terms in molecular mechanics. Whereas, the Young's moduli were the same for the Armchair nanotubes. It is found, when simulating the bending, that the deflections are closer to the theoretical ones, of the classical elasticity, when the diameter of the carbon nanotube increases.     

分子力场发展的新趋势

分子模拟中的力场方法是用来精确计算分子结构和能量的计算方法,它通过原子核的位置来计算体系能量。最初的分子力场都是针对某一特定体系的,它们的许多参数要由观测数据拟合得到。当时要建立新的分子力场是十分困难的,因为实验归属振动谱带需要花费大量的时间。所以此后大多数工作者都致力于发展涵盖尽可能多体系的“求全”型分子力场,这种趋势一直延续至今。但是随着各个学科研究的不断深入,所需要研究的体系越来越复杂,要求的精度也越来越高。在保证相当精度的条件下,“求全”型的分子力场要想涵盖所有需要研究的体系常常是十分困难的事情。2003年问世的Direct Force Field软件包能够便捷的建立针对某一特定分子体系,并且有相当精度的分子力场。它的出现为分子力场从“求全”转为向“求精”发展提供了可能。     

Molecular mechanics (MM2) calculations and cone angles of phosphine ligands

Molecular mechanics (MM2) calculations were performed on 54 conformations of 18 phosphines (PH₃; PH_3−nR_n, where n = 1,…3, and R = Me and Et, n = 1 or 2 and R =ⁱPr, and n = 1 and R =^tBu, PMe₂Et, PMeEt₂, and PPhMe₂, and PPh₂R where R = Me, Et, ⁱPr, ^tBu and Ph). The results are compared to those previously obtained from MINDO/3 and MNDO calculations, and to experimental data. Single conformer cone angles and weighted average cone angles were calculated from MM2 optimized geometries employing Tolman's general definition, and they are compared to Tolman's values, MINDO/3 results, and T.L. Brown's E_R values. Of the cone angle definitions used, the weighted average values are suggested as the best single representation of phosphine ligand sizes. The steric parameters (cone angle and E_R values) alone, and in conjunction with electronic parameters, are correlated with experimental data.     

Implementation of the IMOMM methodology for performing combined QM/MM molecular dynamics simulations and frequency calculations

A technique for implementing the integrated molecular orbital and molecular mechanics (IMOMM) methodology developed by Maseras and Morokuma that is used to perform combined quantum mechanics/molecular mechanics (QM/MM) molecular dynamics simulations, frequency calculations and simulations of macromolecules including explicit solvent is presented. Although the IMOMM methodology is generalized to any coordinate system, the implementation first described by Maseras and Morokuma requires that the QM and MM gradients be transformed into internal coordinates before they are added together. This coordinate transformation can be cumbersome for macromolecular systems and can become ill-defined during the course of a molecular dynamics simulation. We describe an implementation of the IMOMM method in which the QM and MM gradients are combined in the cartesian coordinate system, thereby avoiding potential problems associated with using the internal coordinate system. The implementation can be used to perform combined QM/MM molecular dynamics simulations and frequency calculations within the IMOMM framework. Finally, we have examined the applicability of thermochemical data derived from IMOMM framework. Finally, we have examined the applicability of thermochemical data derived from IMOMM frequency calculations. Received: 11 May 1998 / Accepted: 14 August 1998 / Published online: 16 November 1998     

分子力学计算的参数化过程

介绍了如何通过设计模型分子构造参数的方法和过程：首先设计模型分子；在平衡位置附近选择几个点，对模型分子进行分子力学和量子化学的计算；计算出量子化学能量Eqm和分子力学能量Emm的差值；然后对结构参数（健长，键角，二面角）和能量差值进行拟合，得拟合曲线的方程，从方程的系数可求出参数．文章给出了一些实例．     

Molecular Mechanics Calculations in Organic Chemistry: Examples of the Usefulness of this Simple Non-Quantum Mechanical Model

Various problems arising in experimental organic chemistry can be clarified by molecular mechanics or force field calculations: molecular dynamics (conformational analysis and internal rotation), the search for the most stable isomer of various polycyclic hydrocarbons, reactivity calculations, including solvolysis of bridgehead substituted systems. Such calculations are shown to be useful in elucidating the mechanism of multistep carbonium ion rearrangement, for predicting the structure and stability of anti-Bredt olefins, and also offer an explanation for the selectivity observed in the hydrogenolysis of strained polycyclic smallring hydrocarbons, for the identification of long bonds and electronic effects, for the analysis of late transition states, and for the product distribution in complex reactions.     

磺酰胺类常咯啉的分子力学参数的确定

应用量子化学ＭＮＤＯ程序及分子力学ＭＭＰ２程序，确定了一些未知磺酰胺类常咯啉的分子力学参数。应用这些参数计算了几个晶体结构已知的磺酰胺类化合物，与真实结构比较，计算结果令人满意。由此说明确定的分子力学参数用于计算磺酰胺类化合物时的正确性和可行性。     

Pattern recognition in molecular quantum mechanics

It is shown that the classical concept of an open system does not encompass quantal systems but has to be replaced by the non-Boolean notion of an entangled system. Molecular, chemical, or biological phenomena can be considered to be reduced to a fundamental theory like quantum mechanics only if the fundamental and the phenomenological theories are formally and interpretatively connected, and if the classifications used in the empirical sciences are shown to follow from a single set of fundamental dynamical laws. These conditions enforce a non-statistical and ontic interpretation of quantum mechanics, hence a non-Boolean calculus of propositions. In this interpretation the notion of a world state is well-defined, its Schmidt-decomposition defines a background-dependent model state for molecular systems and creates the phenomena we can observe. To any molecular system there is associated in an objective way a nonnegative number which we call the integrity. The integrity measures the inherent fuzziness of the system concept in a holistic theory, and is used to define recognizable molecular patterns.