Time-dependent wavepacket calculations of atom scattering from surfaces with impurities

Exact quantum-mechanical calculations are reported on atom scattering from a crystalline surface with isolated impurities. The calculations are for He scattering from a one-dimensional model of a Cu surface with adsorbed Ar atoms. The difficulties of carrying out calculations on scattering from extended but non-periodic structures are overcome by using a time-dependent wavepacket approach. A recently developed method for solving the time-dependent Schrödinger equation is employed. Scattering intensities are given for several energies and incidence angles. Detailed insight is obtained on impurity effects on surface scattering. The main features are: (1) Broad intensity tails are superimposed on each diffraction spike. The width of the tails decreases with increasing diffraction order; (2) Shallow rainbow peaks arise, due to impurity induced local corrugation; (3) Weak intensity maxima arise due to interference between surface and impurity scattering. The intensities are somewhat sensitive to the position of the impurity within the surface unit cell. Physical interpretation of the effects is provided from exact calculations, and from a simple sudden approximation for the scattering intensities. It is argued that He scattering can be used to determine impurity locations on surfaces.     

Photoisomerization and thermal isomerization of arylazoimidazoles

Photoisomerization and thermal isomerization behaviors of an extensive series of arylazoimidazoles are investigated. Absorption spectra are characterized by a structured pipi* absorption band around 330-400 nm with a tail on the lower energy side extending to 500 nm corresponding to an npi* transition. The trans-to-cis photoisomerization occurs on excitation into these absorption bands. The quantum yields are dependent on the excitation wavelength, as observed for azobenzene derivatives, but are generally larger than those of azobenzene. The thermal cis-to-trans isomerization rates are also generally larger than that of azobenzene and are comparable to those of 4-N,N-dimethylaminoazobenzene and 4-nitroazobenzene. Arylazoimidazoles with no substituent on the imidazole nitrogen are unique in that the quantum yield for the trans-to-cis photoisomerization and the rate of thermal cis-to-trans isomerization are particularly large. It is proposed that the fast thermal isomerization is due to an involvement of self-catalyzed and protic molecule-assisted tautomerization to a hydrazone form.     

Photoionization dynamics of glycine adsorbed on a silicon cluster: "on-the-fly" simulations

Dynamics of glycine chemisorbed on the surface of a silicon cluster is studied for a process that involves single-photon ionization, followed by recombination with the electron after a selected time delay. The process is studied by "on-the-fly" molecular dynamics simulations, using the semiempirical parametric method number 3 (PM3) potential energy surface. The system is taken to be in the ground state prior to photoionization, and time delays from 5 to 50 fs before the recombination are considered. The time evolution is computed over 10 ps. The main findings are (1) the positive charge after ionization is initially mostly distributed on the silicon cluster. (2) After ionization the major structural changes are on the silicon cluster. These include Si-Si bond breaking and formation and hydrogen transfer between different silicon atoms. (3) The transient ionization event gives rise to dynamical behavior that depends sensitively on the ion state lifetime. Subsequent to 45 fs evolution in the charged state, the glycine molecule starts to rotate on the silicon cluster. Implications of the results to various processes that are induced by transient transition to a charged state are discussed. These include inelastic tunneling in molecular devices, photochemistry on conducting surfaces, and electron-molecule scattering.     

A miniaturized electrode configuration for isoelectric focusing

An electrode configuration is described which allows fast isoelectric focusing (IEF) with conventional IEF systems. The equipment, which can be fixed on the cooling plate of a conventional IEF system, consists of a base plate on which flappable electrode holders are fastened. The handling is simple and needs only little time. Graphite rods are used as electrodes, thus avoiding the use of buffer strips. Samples are applied with special applicator strips--permitting the analysis of up to 19 samples on a 50 x 40 mm polyacrylamide gel and up to 44 samples on a 100 x 70 mm gel. Only 30 min are needed for one IEF run.     

Reaction path as a gradient line on a potential energy surface

The reaction path is shown to be always a gradient line on a potential energy surface (PES ) of a molecule. The properties of gradient lines on the PES are elucidated. Correct symmetry conservation rules along the gradient line are derived. The behavior of the gradient line on a PES with different topologies are considered. © 1994 John Wiley & Sons, Inc.     

Luminescence and Stability of 1,4,5-Triaryl-1,2,3-Triazoles

The fluorescence, phosphorescence, and photochemical properties of di- and triaryl-substituted-1,2,3-triazoles are reported in this work. The ease of synthesis of regioisomers of substituted triazoles enables a systematic study on the correlation between regiochemistry and excited state properties, which include the solvent dependence of fluorescence, energy gap between singlet and triplet emitters, and propensity to photon-triggered transformations. The triazoles that carry electron (e)-donor and e-acceptor aryl substituents show high fluorescence quantum yields in weakly polar solvents and exhibit solvent-dependent fluorescence. The luminescence properties of these compounds in glass matrices at 77 K are characterized. The thermal and photo-stability, two parameters that are crucial to their potential utilities in optical devices, of these compounds are determined. The position of the e-donor substituent has a significant impact on the fluorescence emission energy and solvent sensitivity, singlet-triplet energy gap, and photochemical reactivity and stability. The experimental observations on the structural correlation with the photophysical and photochemical properties are explained by quantum chemical calculations. This study provides a rationale on the placement of substituent on a donor-acceptor type fluorophore to maneuver a range of photo-related properties.     

Monte Carlo simulation studies of polymer systems

Polymers molecules in solution or melt are more or less flexible and continuously change their shape and size. Thus, characteristic properties of the system fluctuate around statistical mean values which are dependent on the concentration of the solution, on the quality of the solvent used, and on the specific structure of the molecules, e.g. linear or star-branched. The most direct approach to these quantities on a molecular level are computer simulations. Due to restrictions of computer power fully atomistic simulations of macromolecules are presently still at the beginning but several arguments justify the use of simplified models. The most efficient way dealing with polymer systems are Monte Carlo simulations based on lattice chains, at least as long as static properties are of interest only. In the present paper a short introduction to the field is given and selected examples are presented in order to demonstrate the usefulness of these methods.     

Methyl formate and its mono and difluoro derivatives: conformational manifolds, basicity, and interaction with HF theoretical investigation

The conformational manifolds, scenarios of protonation, and hydrogen bond propensity of methyl formate and its mono and difluoro derivatives, which possess two oxygen atoms with different basicities, are studied at the B3LYP/6-311++G(3df,3pd) computational level. The optimized geometries of the title molecules, their energetics, and relevant harmonic vibrational frequencies, mainly of the ν(CH) mode of the H-C═O group, are of a primary focus. The Natural Bond Orbital analysis is invoked to obtain the second-order intra- or intermolecular hyperconjugation energies, occupations of antibonding orbitals, and hybridization of the carbon atoms. It is demonstrated that the Z conformers (and their rotamers) of the three title molecules are characterized by a higher stability compared to the E ones. The stabilities depend on the intramolecular hyperconjugative interaction and on the attraction or repulsion nonbonded interaction. The proton affinity of the carbonyl oxygen exceeds, by 15-20 kcal·mol(-1), that of the methoxy oxygen. Fluorine substitution causes a moderate lowering of the proton affinity of the oxygens. Protonation on the oxygen atoms yields a contraction of the C-H bond and large concomitant blue shift of the ν(CH) vibration. These changes are mainly determined by a lowering of the occupation of the corresponding σ*(CH) orbitals. The esters under consideration are probed on the interaction with the HF molecule. The complexes that are formed under this interaction on the oxygen of the H-C═O group are stronger than those formed on the oxygen belonging to the methoxy one. It is deduced that the hydrogen bond energies show a linear dependence on the proton affinities of the corresponding oxygen atoms. Hydrogen-bonded complexes of moderate strength are also formed, while HF interacts with the fluorine atoms of the fluorinated esters.     

The surface energy of hydrophilic and hydrophobic adsorbents

Water vapor adsorption and heats of water wetting are studied for hydrophilic quartz, hydrophobic-hydrophilic talc, and hydrophobized Silochrom samples. Water contact angles on the materials under examination are found. The surface thermodynamic parameters of the sorbents are calculated from the data obtained. It is shown that boundary water layers on hydrophilic quartz surface are ordered to a higher extent, while those on hydrophobic basal surfaces of talc particles and hydrophobic surfaces of modified Silochrom samples are ordered to a lower extent relative to liquid water. An empirical equation relating the surface pressure of water films adsorbed on hydrophilic high-energy surfaces with the surface free energy of the latter is proposed. The values of surface free energy are estimated from this equation for a number of important hydrophilic adsorbents.     

Enumeration of digraphs with a given automorphism group

Four methods are described for enumerating digraphs with a given automorphism group: (1) a generating-function method based on subduced cycle indices, (2) a generating-function method based on partial cycle indices, (3) a method based on the elementary superposition theorem, and (4) a method based on the partial superposition theorem. All of these methods are based on the concept of unit subduced cycle indices and construct a set of versatile tools for combinatorial enumeration. They are applied to the enumeration of five-vertex digraphs with a given automorphism group. The table of marks and its inverse for the symmetric group of degree 5 are recalled. The table of USCIs of this roup is obtained.Dedicated to Professor Frank Harary.     

Experimental study of hybrid nematic wetting films

Liquid crystal layers, with thickness less than 1 μm, are deposited on isotropic - solid or liquid - substrates and investigated in the bulk nematic range of temperatures. The boundary conditions at interfaces are antagonist ones, therefore the layers are distorted due to nematic elasticity. These films are referred to as "hybrid nematics". The consequences are complex. First, a forbidden range of film thickness is observed, depending only on temperature. Second, the anisotropy of the elastic response gives rise to striking stripe patterns in the thicker films. This behavior is common to several members of the series of n-cyanobiphenyls deposited on oxidized silicon wafers, water and glycerol. The aim of the study is to collect data, and determine which ones find a place within a common theoretical framework.     

Effects of electric fields on proton transport through water chains

Molecular dynamics simulations on quantum energy surfaces are carried out to study the effects of perturbing electric fields on proton transport (PT) in protonated water chains. As an idealized model of a hydrophobic cavity in the interior of a protein the water molecules are confined into a carbon nanotube (CNT). The water chain connects a hydrated hydronium ion (H3O+) at one end of the CNT and an imidazole molecule at the other end. Without perturbing electric fields PT from the hydronium proton donor to the imidazole acceptor occurs on a picosecond time scale. External perturbations to PT are created by electric fields of varying intensities, normal to the CNT axis, generated by a neutral pair of charges on the nanotube wall. For fields above approximately 0.5 VA, the hydronium ion is effectively trapped at the CNT center, and PT blocked. Fields of comparable strength are generated inside proteins by nearby polar/charged amino acids. At lower fields the system displays a rich dynamic behavior, where the excess charge shuttles back and forth along the water chain before reaching the acceptor group on the picosecond time scale. The effects of the perturbing field on the proton movement are analyzed in terms of structural and dynamic properties of the water chain. The implications of these observations on PT in biomolecular systems and its control by external perturbing fields are discussed.     

Large molecular aggregates: From atmospheric aerosols to drug nanoparticles

Large molecular aggregates with sizes ranging from subnanometers to microns are ubiquitous. As atmospheric aerosols they influence our climate, in interstellar space they are discussed as reactive sites, and in medicine small particles are considered as promising candidates to achieve a targeted drug delivery. The present contribution is focused on the characterization of the physical-chemical properties of these particles and on their targeted generation. One of the greatest challenges is to understand the properties of these aggregates on a molecular level. The latter point is discussed in detail focussing on the vibrational dynamics of these particles.     

Electrostatic calculation of linear and non-linear optical properties of ice Ih,II, IX and VIII

Macroscopic first- and third-order susceptibilities of ice Ih, ice II, ice IX and ice VIII are calculated using static and frequency-dependent electronic and static vibrational molecular (hyper)polarizabilities at the MP2 level. The molecular properties are in good agreement with experiment and with high-level ab initio calculations. Intermolecular electrostatic and polarization effects due to induced dipoles are taken into account using a rigorous local-field theory. The electric field due to permanent dipoles is used to calculate effective in-crystal (hyper)polarizabilities. The polarizability depends only weakly on the permanent field, but the dipole moment and the hyperpolarizabilities are strongly affected. The calculated linear susceptibility is in good agreement with available experimental data for ice Ih, and the third-order susceptibility for a third harmonic generation experiment is in reasonable agreement with experimental values for liquid water. The molecular vibrational contributions have a small effect on the susceptibilities. The electric properties of a water tetramer are calculated and used to estimate the effect of non-dipolar interactions on the susceptibilities of ice Ih, which are found to be small.     

Theoretical calculations of refractive indices and optical effects in spectra of nitric acid and nitric acid monohydrate crystals

The theoretical infrared refractive indices of two systems related to atmospheric research, nitric acid (NA) and nitric acid monohydrate (NAM) crystals, have been computed using a methodology based on first-principles. The effects of lack of coherence in the infrared beam in RAIR and transmission spectra have also been treated using a model based on classical optics. The optical constants of NA crystals are presented for the first time; the results on NAM are compared to empirical values previously published with good general agreement. With the optical constants of NA, polarized reflection-absorption infrared spectra are predicted and compared to experimental spectra recorded also for the first time, for a set of varying film thickness. The global agreement is satisfactory. The effects of a number of experimental factors in transmission spectra of NAM are assessed, in an attempt to explain observed differences among experimental spectra. It is concluded that the spectral disparities are probably due to differences in the nature of the samples.     

Whispering-gallery mode resonators: Surface enhanced Raman scattering without plasmons

Calculations based on the Mie theory are performed to determine the locally enhanced electric fields due to whispering-gallery mode resonances for dielectric microspheres, with emphasis on electromagnetic "hot spots" that are located along the wavevector direction on the surface of the sphere. The local electric field enhancement associated with these hot spots is used to determine the surface enhanced Raman scattering enhancement factors for a molecule, here treated as a classical dipole, located near the surface of the sphere. Both incident and Raman emission enhancements are calculated accurately using an extension of the Mie theory that includes interaction of the Raman dipole field with the sphere. The enhancement factors are calculated for dielectric spheres in vacuum with a refractive index of 1.9 and radii of 5, 10, and 20 microm and for wavelengths that span the visible spectrum. Maximum Raman scattering enhancement factors on the order of 10(3)-10(4) are found at locations slightly off the propagation axis when the incident excitation but not the Stokes-shifted radiation is coincident with a whispering-gallery mode resonance. The enhancement factors are found to vary inversely with the resonance width, and this determines the influence of the mode number and order on the results. Additional calculations are performed for the case where the Stokes-shifted radiation is also on-resonance and Raman enhancement factors as large as 10(8) are found. These enhancement factors are typically a factor of 10(2) smaller than would be obtained from /E/4 enhancement estimates, as enhancement of the Raman dipole emission is significantly reduced compared to the local field enhancement for micron size particles or larger. Conditions under which single-molecule or few-molecule measurements are feasible are identified.     

Experience of implementing ISO 17025 for the accreditation of a university testing laboratory

The experience of implementing a quality system on ISO 17025, and the accreditation of some tests for a university laboratory, is presented in the example of the Environmental Radiology Laboratory. Such implementation in a university institution is a difficult task, since the setting and environment are both unfavourable. The particularities are the collaboration of many independent units of the university, and the involvement of teachers and young researchers who have to coordinate all these different tasks, which makes the number of people working quite variable. Some specific aspects of the system are discussed. The conclusion is that implementation of a quality system on ISO 17025 and accreditation are completely achievable, and are helpful activities to put university members in touch with the real world and broaden their minds, which in the end has a positive impact on research studies and academic content.     

Synthesis of nonconjugated dendrons with a redox gradient

Macromolecules with built-in redox gradients are of much interest due to their potential in a variety of optoelectronic and energy-harvesting applications. In this paper, the design and synthesis of nonconjugated dendrons with redox gradients to guide the charge flow from the core to the periphery is described. The dendrons reported here are based on benzyl ether connectivities. The repeat units of the dendrons are based on triarylamines, and the periphery units of the dendrons are based on N,N,N',N'-tetraarylbenzidine units. The presence of a redox gradient after incorporation of these charge-transporting units into the dendrons is supported by cyclic voltammetric studies.     

Carbon on transition metal surfaces

The review surveys the conditions of formation and properties of four forms of surface carbon on transition metals, to wit, adsorbed atoms and clusters, surface carbide and graphite, and their role in the physical and chemical processes on the surface. The first-order phase transition in the adlayer, when graphite islands coexist with carbon gas, are considered. The effect of intercalation, when atoms (Cs, K, Na, Ba, Pt, Si) penetrate spontaneously under the graphite islands physisorbed on the metal, and its mechanism are discussed. An analysis is made of the poisoning of platinum-group metal catalysts in the reaction of dissociation, when graphite islands characterized by extreme adsorption and catalytic passivity form in the adlayer. The method of CsCl dissociation to probe the surface carbon is treated. Attention is drawn to the adsorption of a number of atoms (Cs, K, Ba, Pt) on a graphite monolayer on metals, and the properties of such systems are discussed. The effects observed in coadsorption of CsCl molecules with K, Na, Ba, Tm atoms on a graphite monolayer on metals are covered. By analogy with the bulk carbides, surface carbides of fixed stoichiometry and very strong metal-carbon bonding have been revealed to form on the surface of transition metals (W, Re, Mo). The effect of displacement of surface carbon into the bulk of the metal stimulated by the adsorption of some atoms (Si, S, O) is discussed. The carbon clusters adsorbed on metals are considered. The transport of surface carbon, its desorption and diffusion between the surface and the bulk of the metal with a single- and double-phase adlayer are reviewed.