Functionalized proline with double hydrogen bonding potential: highly enantioselective Michael addition of carbonyl compounds to β-nitrostyrenes in brine

Simple synthetic manipulation of S-proline allows access to prolinamides 5-7 as organocatalysts capable of double hydrogen bonding for enantioselective Michael addition reactions of carbonyl compounds to β-nitrostyrenes. It is shown that prolinamide catalyst 7 leads to addition products with a high diastereo- as well as enantioselectivity. The transition state structure involving the binding of electrophilic nitrostyrene via two H-bonds is believed to be further stabilized by π,π stacking interactions mediated by the tosyl ring.     

Rational Design of Simple Organocatalysts for the HSiCl3 Enantioselective Reduction of (E)-N-(1-Phenylethylidene)aniline

Prolinamides are well-known organocatalysts for the HSiCl₃ reduction of imines; however, custom design of catalysts is based on trial-and-error experiments. In this work, we have used a combination of computational calculations and experimental work, including kinetic analyses, to properly understand this process and to design optimized catalysts for the benchmark (E)-N-(1-phenylethylidene)aniline. The best results have been obtained with the amide derived from 4-methoxyaniline and the N-pivaloyl protected proline, for which the catalyzed process is almost 600 times faster than the uncatalyzed one. Mechanistic studies reveal that the formation of the component supramolecular complex catalyst-HSiCl₃-substrate, involving hydrogen bonding breaking and costly conformational changes in the prolinamide, is an important step in the overall process.     

N-(heteroarenesulfonyl)prolinamides-catalyzed aldol reaction between acetone and aryl trihalomethyl ketones

Enantiomerically enriched trihalomethyl-substituted alcohols having a quaternary chiral carbon center can be prepared by the catalytic enantioselective cross-aldol reaction of acetone with trihalomethyl ketones by using N-(8-quinolinesulfonyl)prolinamide as an organocatalyst. The MO calculations elucidate that the hydrogen bonding between the sulfonimide proton and the 8-quinolyl nitrogen atom plays an important role in exerting the enantioselectivity of the reaction.     

LCAO-MO-SCF-Calculations on the stability and Sterochernistry of hydrogen bonds

CNDO and INDO calculations were performed on numerous structures with hydrogen bonds of different strength. An almost linear relationship is found between the strength of weak hydrogen bonds and the amount of charge transfered.π-electrons and lone pairs are nearly equivalent in hydrogen bonding. The stereochemistry of hydrogen bonds is determined largely by additional interactions betweenσ-bonds of the two molecules. Since proton affinities are calculated too large by the CNDO method, an error is introduced in the potential curves for proton transfer in weak hydrogen bonds. In systems with strong hydrogen bonds both structures with the proton on the right and left have almost the same energy and hence the potential curves for proton transfer are free of the errors mentioned above.     

C2-symmetric bisprolinamide as a highly efficient catalyst for direct aldol reaction

[reaction: see text] The catalytic activity of the prolinamide-type catalysts may be improved by introducing additional prolinamide moiety into the catalyst, while the enantioselectivity can still be maintained or further improved. A C2-symmetric bisprolinamide with two prolinamide moieties has been found to be an excellent catalyst for direct aldol reaction with more than doubled reactivity and better asymmetric induction than its monoprolinamide counterpart.     

Statistical theory for hydrogen bonding fluid system of A a D d type (I): The geometrical phase transition

The influence of hydrogen bonds on the physical and chemical properties of hydrogen bonding fluid system of A _a D _d type is investigated from two viewpoints by the principle of statistical mechanics. In detail, we proposed two new ways that can be used to obtain the equilibrium size distribution of the hydrogen bonding clusters, and derived the analytical expression of a relationship between the hydrogen bonding free energy and hydrogen bonding degree. For the nonlinear hydrogen bonding systems, it is shown that the sol-gel phase transition can take place under proper conditions, which is further proven to be a kind of geometrical phase transition rather than a thermodynamic one. Moreover, several problems associated with the geometrical phase transition and liquid-solid phase transition in nonlinear hydrogen bonding systems are discussed.     

Evaluation of the individual hydrogen bonding energies in N-methylacetamide chains

The individual hydrogen bonding energies in N-methylacetamide chains were evaluated at the MP2/6-31+G** level including BSSE correction and at the B3LYP/6-311++G(3df,2pd) level including BSSE and van der Waals correction. The calculation results indicate that compared with MP2 results, B3LYP calculations without van der Waals correction underestimate the individual hydrogen bonding energies about 5.4 kJ mol^?1 for both the terminal and central hydrogen bonds, whereas B3LYP calculations with van der Waals correction produce almost the same individual hydrogen bonding energies as MP2 does for those terminal hydrogen bonds, but still underestimate the individual hydrogen bonding energies about 2.5 kJ mol^?1 for the hydrogen bonds near the center. Our calculation results show that the individual hydrogen bonding energy becomes more negative (more attractive) as the chain becomes longer and that the hydrogen bonds close to the interior of the chain are stronger than those near the ends. The weakest individual hydrogen bonding energy is about ?29.0 kJ mol^?1 found in the dimer, whereas with the growth of the N-methylacetamide chain the individual hydrogen bonding energy was estimated to be as large as ?62.5 kJ mol^?1 found in the N-methylacetamide decamer, showing that there is a significant hydrogen bond cooperative effect in N-methylacetamide chains. The natural bond orbital analysis indicates that a stronger hydrogen bond corresponds to a larger positive charge for the H atom and a larger negative charge for the O atom in the N-H?O=C bond, corresponds to a stronger second-order stabilization energy between the oxygen lone pair and the N-H antibonding orbital, and corresponds to more charge transfer between the hydrogen bonded donor and acceptor molecules.     

Intramolecular N-H···O and N-H···N hydrogen bonding patterns in N-benzyl and N-(pyridin-2-ylmethyl) benzamides

This Letter reports the evidences for intramolecular six-membered N-H···O hydrogen bonding in N-benzyl benzamides and five-membered N-H···N hydrogen bonding in N-(pyridin-2-ylmethyl) benzamide. Intramolecular six-membered N-H···X (X = O or F) hydrogen bonding in 2-methoxyl- or 2-fluorobenzamides is used to lock the amide proton from forming strong intermolecular N-H···OC hydrogen bonding. As a result, for the first time the new intramolecular hydrogen bonding patterns are observed in the crystal structures of nine amides, whereas the whole molecules give rise to a new class of three-center hydrogen bonding motif. ¹H NMR study in chloroform-d also supports that this weak intramolecular hydrogen bonding pattern exists in solution.     

Hydrogen bonding nature between calix[6]arene and piperidine/triethylamine

We investigated the binding nature of the 1,2,3-alternate calix[6]arene with one piperidine, two piperidines, and two triethyl amines with a special emphasis on the hydrogen bonding networks by density functional theory calculations. The 1,2,3-alternate calix[6]arene strongly binds with piperidines and triethylamines at two different binding sites, exo and endo sites. In the two binding sites, the hydrogen bonding nature shows a characteristic difference. In the exo site, there formed only one hydrogen bond, while in the endo site, two hydrogen bonds except for the triethylamine. The proton transfer within the hydrogen bonding and the hydrogen bonding types, normal hydrogen bonding (NHB), short strong hydrogen bond (SSHB), and low barrier hydrogen bonding (LBHB), will be discussed in detail.     

FTIR study on molecular structure of poly(N-isopropylacrylamide) in mixed solvent of methanol and water

The intrachain and interchain hydrogen bonding of poly(N-isopropylacrylamide) (PNIPA) and intermolecular hydrogen bonding between PNIPA chains and the solvent molecules in the mixed solvent of methanol and water have been quantitatively investigated by using Fourier transform infrared (FTIR) spectroscopy at 25 °C. In this spectroscopic system with curve fitting program, we found that in the C-H stretching region, both the N-isopropyl group and the backbone underwent conformational change upon the solvent composition. An analysis of the amide I band suggested that the amide groups of PNIPA were mainly involved in intermolecular hydrogen bonding with water molecules, and the polymer chains were flexible and disordered in the mixed solvent when the methanol volume fraction (χ_v) was lower than 15%. While χ_v was in the range of 15-65%, about 30% of these intermolecular hydrogen bonding between the polymer and water were replaced by intrachain and interchain hydrogen bonding, consequently, PNIPA shrinked as aggregates. If χ_v was above 65%, the interchain hydrogen bonding became predominant due to the solubility characteristics of amphiphilic methanol, and the PNIPA system was homogeneous solution again. We believe that the reentrant transition is related to the weaker interaction between PNIPA molecules and methanol-water complexes, (H₂O)_m(CH₃OH)_n (m/n = 5/1, 5/2, 5/3, 5/4, 5/5) as compared to that between PNIPA and free water or free methanol.     

Chiral and supramolecular model complexes for vanadium haloperoxidases: Host–guest systems and hydrogen bonding relays for vanadate species

Supramolecular interactions and hydrogen bonding play a fundamental role in determining both structure and function of vanadate in enzymatic systems and in particular for the active site of vanadium haloperoxidases. Vanadium complexes with N-salicylidene hydrazide ligands provide a versatile approach towards molecular model systems with hydrogen bonding interactions. The variation of the side chains within these hydrazone ligands provides the ability to introduce chirality in molecular model complexes by the utilization of appropriate carbohydrate fragments. Moreover, the synthetic potential and the transformation reactions found for dioxidovanadium(V) complexes with N-salicylidene hydrazide ligands are reminiscent of what is usually observed for carboxylates and can therefore be regarded as their inorganic counterpart. The anisotropy effect of the oxido groups in vanadium complexes is a valuable tool that allows for the configurational and conformational analysis of structures with corresponding chelate rings. Utilizing appropriate vanadium complexes it is possible to generate inclusion compounds with cyclodextrins. The dependence of solid state and solution structures on the ring size of the cyclodextrin is discussed.     

Preparation of new bis(oxazoline) ligand bearing non-covalent interaction sites and an application in the highly asymmetric Diels-Alder reaction

New asymmetric bis(oxazoline) (Box) ligand bearing amide group at the oxazoline 4-position, (S,S)-2,2′-methylenebis(4-tert-butylcarbamoyl-2-oxazoline) (1S), was designed and synthesized for selective catalytic reaction. The crystal structure of the ternary copper complex, consisting of 1S and N-benzoyl-N-phenyl-hydroxylamine, demonstrated interligand interactions, such as hydrogen bonding and CH-π interaction. Catalytic performance of the copper complex with 1S was investigated for an asymmetric Diels-Alder reaction using benzylidene-2-acetylpyridine and 1,3-cyclohexadiene (CHD). The reaction product was enantio-pure endo-(pyridin-2-yl)(3-phenylbicyclo[2,2,2]oct-5-ene-2-yl)methanone (BPCD), of which crystal structure was analyzed by the X-ray method. No stereo- and enantio-isomer of BPCD was detected by chiral HPLC analysis. Introduction of hydrogen bonding site into 1S can promote the Diels-Alder reaction even though using poor reactive CHD. Without 1S, this reaction did not give any product. Addition of 2-propanol to this reaction system inhibited the formation of BPCD, indicating that the designed interligand interaction sites, especially hydrogen bonding, play an important role for catalytic performance.     

Microsolvation of DMSO: Density functional study on the structure and polaraizabilities

The structure and stability for the association of water with dimethyl sulfoxide (DMSO) are investigated using the density functional M06‐2X level theory. Stable complexes are formed by the formation of hydrogen bonding between water and oxygen atom of DMSO molecule, while the electrostatic force between water and DMSO plays a vital role in deciding the structure. The water‐DMSO interactions are stronger than the interwater hydrogen bonds, which can be inferred from the shorter DMSO‐water bond distance compared with the water–water bond distance. The calculated solvent association energy does not saturate, and it remains favorable to attach additional water molecules to the existing water network. The calculated IR spectra shifts supports the formation stronger hydrogen bonding, while the electrostatic potential (ESP) plot supports the existence of weaker electrostatic interaction in the studied clusters. The polarizabilities for the ground state clusters were found to increase monotonically with the cluster size. The presence of additional electrostatic bonding between water and DMSO, devastates the linear hydrogen‐bonding network. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Raman study of the temperature and pressure effects on the Fermi resonance and hydrogen bonding in liquid ammonia

The Raman bands of ammonia, v₁ and 2v₄ vibrations coupled by Fermi resonance, have been studied at pressures varied from vapour pressure up to 2 kbar and over a temperature range from 0 to 100°C. The Fermi parameters of the uncoupled frequencies Ω_a and Ω_b, the intensity ratios of the bands in resonance, R, and the anharmonic force constant,f₁₄₄, have been obtained by using standard procedures and also by fitting the isotropic spectra to the coupled oscillator functions. The internally consistent results have been compared to the previously published data and discussed in terms of the hydrogen bonding interactions. The spectroscopic results indicate that no additional band due to hydrogen bonding is present in the Raman spectrum.     

Intermolecular-medium and intramolecular-weak hydrogen bonding chains in the crystals of chiral trifluoromethylated amino alcohols

A structural feature of hydrogen bonding chains found in the crystals of trifluoromethylated amino alcohols is reported. Hydrogen bondings of 3-(N,N-dialkylamino)-1,1,1-trifluoro-2-propanols construct chiral spiral hydrogen bonding chains. Lone pairs on the nitrogen atoms of the amino alcohols participate in two hydrogen bondings. Detailed structural analysis of the hydrogen bonds of the 3-(N,N-dimethylamino)-1,1,1-trifluoro-2-propanol suggested that the chain built up with alternating intermolecular-medium and intramolecular-weak hydrogen bonds. The medium intermolecular hydrogen bond, which transfers a proton from the hydroxy group to the amino nitrogen, would make a tentative zwitterionic form of the molecule. Then, electrostatic attraction between the charges in the zwitterion centers induced a weak intramolecular hydrogen bond.     

Excess enthalpies of binary mixtures of 2-ethoxyethanol with four hydrocarbons at 298.15, 308.15, and 318.15 K: An experimental and theoretical study

New experimental data are reported for the thermodynamic investigation of the intermolecular and intra-molecular hydrogen bonding in 2-ethoxyethanol + hydrocarbons. The excess enthalpies of the mixtures of 2-ethoxyethanol + n-hexane, or cyclohexane, or benzene, or n-octane at three temperatures (298.15, 308.15, and 318.15 K) were measured. The data are correlated with the statistical thermodynamic model non-random hydrogen bonding (NRHB) which accounts for both types of hydrogen bonds and was recently developed by the authors. A single set of hydrogen bonding parameters is used for all the alkoxyethanol systems and for the recently calculated thermodynamic properties. The results showed a satisfactory agreement between experimental and calculated data and the contributions of all different types of molecular interactions were calculated. The intra-molecular hydrogen bonding contribution to the heats of mixing is exothermic and significant. The calorimetric measurements are combined with dielectric ones and the derived Kirkwood factor is used to interpret the physicochemical behaviour of our systems.     

Crystal Structure of H227A Mutant of Arginine Kinase in Daphnia magna Suggests the Importance of Its Stability

Arginine kinase (AK) plays a crucial role in the survival of Daphnia magna, a water flea and a common planktonic invertebrate sensitive to water pollution, owing to the production of bioenergy. AK from D. magna (DmAK) has four highly conserved histidine residues, namely, H90, H227, H284, and H315 in the amino acid sequence. In contrast to DmAK WT (wild type), the enzyme activity of the H227A mutant decreases by 18%. To identify the structure-function relationship of this H227A mutant enzyme, the crystal 3D X-ray structure has been determined and an unfolding assay using anilino-1-naphthalenesulfonic acid (ANS) fluorescence has been undertaken. The results revealed that when compared to the DmAK WT, the hydrogen bonding between H227 and A135 was broken in the H227A crystal structure. This suggests that H227 residue, closed to the arginine binding site, plays an important role in maintaining the structural stability and maximizing the enzyme activity through hydrogen bonding with the backbone oxygen of A135.     

Proton-driven conformational change in a 2-aryl-p-carborane constrained by an intramolecular C-H?O hydrogen bond

2-(2-Hydroxyphenyl)-p-carborane forms an intramolecular hydrogen bonding based on the results of X-ray, IR, and ¹H NMR studies. The hydrogen bonding is released by the addition of acid in solution. Density functional theory (DFT) calculations on the phenol, phenolate and protonated phenol structures indicated two stable conformational state, hydrogen bonding form for phenol and phenolate, and dihydrogen bonding form for protonated phenol.     

Synthesis, structure, and conformational mobility of a vaulted trans-bis(o-aminophenolato)platinum(II) complex

The synthesis, structure, and conformational mobility of a trans-bis(aminophenolato)platinum(II) complex bearing a dodecamethylene bridge, [Pt(L)] (1) [H ₂ L = N,N′-Dimethyl-N,N′-bis(2-hydroxyphenylmethyl)dodecane-1,12-diamine] are described. The 2D NMR and X-ray diffraction analysis revealed that the complex has a “reversed U”-shaped syn conformation in the solution state, which is mainly due to steric congestion of the vaulted structure and hydrogen bonding at the bis[(o-aminomethyl)phenolato] coordination site, while the complex unit is packed in the crystalline state with “Z-shaped” anti-conformation due to highly regulated molecular arrangement by 3D CH-π and hydrogen bonding interactions.     

N-Prolinylanthranilic acid derivatives as bifunctional organocatalysts for asymmetric aldol reactions

Several N-prolinylanthranilic acid derivatives were prepared and tested as bifunctional organocatalysts in the direct asymmetric aldol reaction of cyclohexanone with p-nitrobenzaldehyde. It was found that methyl substitution ortho to the carboxylic acid improves enantioselectivity, but substitution ortho to the anilide group does not. The catalyst derived from 2-amino-6-methylbenzoic acid was tested over a range of direct asymmetric aldol reactions and its overall performance is equal to or better than many of the known prolinamide catalysts in terms of yield, diastereoselectivity, and enantioselectivity.