IR spectra and structure of 4-thiobarbituric acid derivatives

On the basis of data from the IR spectra of 4-thiobarbituric acid derivatives, and their deutero analogs, and similarly constructed model compounds, it was established that the investigated substances exist in the thione lactam form and form two types of associates through intermolecular hydrogen bonds.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 10, pp. 1416–1419, October, 1977.     

Density functional theory study on molecular structure and vibrational IR spectra of isocytosine

Density functional theory with the combined Becke3-LYP exchange-correlation energy functional [DFT(B3-LYP) method] using the 6-31G(d, p) basis set is applied to predict molecular parameters (geometries, rotational constants, dipole moments) and vibrational IR spectra (harmonic wavenumbers, absolute intensities) of six tautomers of the isocytosine molecule. The results are compared with the corresponding data calculated at the conventional ab initio Hartree-Fock (HF) level using the same basis set and with available experimental data. Calculations show that (a) three amino tautomers are slightly nonplanar species with, evidently, a distorted amino group, (b) the DFT (B3-LYP)/6-31G(d, p) method predicts better molecular parameters, than do the HF calculations, and (c) the DFT(B3-LYP)-calculated vibrational IR spectra of isocytosine agree well with the available recorded IR spectra, and they show marked improvement over the IR spectra predicted at the HF/6-31G(d, p) level. Tautomeric stabilities of isocytosine are discussed on the basis of computed electronic energies by the DFT(B3-LYP) and ab initio approaches [including the MP2 and MP4(SDQ) calculations of electronic energies] and predicted zero-point vibrational energies by DFT(B3-LYP) and HF methods. This relative energies at 0 K of the tautomeric forms of isocytosine predicted by both conventional ab initio and DFT(B3-LYP) methods correlate well with the experimental data, showing the predominance of the aminohydroxy tautomer of isocytosine for an isolated molecule. © 1997 John Wiley & Sons, Inc.     

Effect of molecular and crystal structure ofN-naphthylurethanes (carbamates) on their IR spectra

A comparative analysis of the IR spectra in the region of 3000–400 cm⁻¹ of four urethanes (methyl-(N-(1-naphthyl) carbamate, ethyl-N-(1-naphthyl) carbamate, dimethyl-N,N′-(1,5-naphthylene) dicarbamate, and diethyl-N,N′-(1,5-naphthylene) dicarbamate) with known molecular and crystal structures was carried out. The assignment of the bands related to the vibrations of the urethane and naphthyl fragments was refined on the basis of the study of the crystalline samples, melts, solutions, and deuterated analogs. The effect of the degree of conjugation of the urethane group with the naphthalene ring on the Amide II vibration frequency in the crystals was shown. It was suggested that the stretching vibrations of the C(Ar)−N bond in naphthylurethanes (unlike aliphatic derivatives) make a considerable contribution to the Amide II vibration, while the planar deformation vibration of the N−H bond was proved to be more significant for Amide III than for Amide II. In addition, strong nonspecific intermolecular interactions in the crystal can weaken valent bonds. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 2, pp. 300–303, February, 1998.     

阿魏酸分子结构和振动光谱的理论研究

阿魏酸是一种有效的天然油脂抗氧化剂.采用密度泛函理论(DFT) B3LYP方法和从头算HF两种方法,在6-311++G**基组水平上对阿魏酸分子的几何结构进行全优化,得到其几何结构参数,进一步计算得到阿魏酸的红外和拉曼振动光谱.计算结果表明,采用B3LYP和HF 2种方法优化得到的几何结构及频率值是一致的,对在B3LYP方法下计算得到的红外和拉曼振动频率进行合理的理论归属并与SDBS数据库实验数据进行比较,发现计算得到的红外和拉曼振动频率与实验测定结果符合较好.阿魏酸分子结构和振动光谱的研究,为研究阿魏酸及其衍生物的化学结构与生理活性之间的构效关系提供依据.     

IR spectra and structure of biologically active carbulose preparation

The structural features of the carbulose preparation were studied by IR spectroscopy. It was shown that its base consists of a stable dimer of pyranose rings with a cellulose matrix, while its biological activity is determined by aprotic carboxylic COO^– groups in the side chains.Kiev Polytechnical Institute. Translated from Teoreticheskaya i Éksperimental'naya Khimiya, Vol. 27, No. 3, pp. 387–390, May–June, 1991. Original article submitted March 4, 1991.     

IR spectra and structure of 2-aryl-3-hydroxypyridines

The IR spectra of methyl, chloro, and phenyl derivatives of 3-hydroxypyridines in CCl₄ solutions and in the crystalline state were studied. A comparison of the frequencies, half widths, and integral intensities of the bands of the stretching vibrations of the hydroxyl groups in the spectra of solutions of the 3-hydroxypyridine derivatives in CCl₄ with the characteristic OH bands in the spectra of phenols demonstrates that 3-hydroxypyridines exist practically completely in the hydroxy form in dilute CCl₄ solutions. The shift in the OH bands in the spectra of 2-phenyl-3-hydroxypyridine derivatives indicates that the OH group forms a -hydrogen bond with the phenyl ring. The presence also of a band of a free OH group is evidence for the existence of s-cis and s-trans conformers relative to the C-O bond.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 2, pp. 187–190, February, 1972.     

Electrical conductivity and IR spectra of molten benzoic acid

Impedance method was used to measure the electrical conductivity of benzoic acid melts, and the concentration of free protons in these melts was estimated. IR spectroscopic data are presented and the existence of benzoic acid in melts in the form of molecules is suggested.     

Complete sets of structure fragments for interpreting IR spectra using IR databases

This paper studies the possibility of revealing various fragments (not given beforehand) in a structure by analyzing the structures selected from the database as a result of a retrieval by the IR spectrum of the compound; the fragments range from those with two nodes (e.g., C=O, C=C) to those with some limited number of connected nodes. It is shown that complete fragment sets reflecting the composition of the selected compound (fragment compositions) contain the information about the set of bonded fragments of the compound. Various factors affecting analysis of the compiled list of fragments are considered using a particular example. Different techniques for revealing structural information are discussed. Scientific and Technical Center of Chemical Informatics, Novosibirsk Institute of Organic Chemistry, Siberian Branch, Russian Academy of Sciences. Translated fromZhurnal Strukturnoi Khimii, Vol. 37, No. 2, pp. 368–378, March–April, 1996. Translated by L. Smolina     

The low-frequency Raman and IR spectra of nitric acid hydrates

The low-frequency region of the infrared and Raman spectra of nitric acid hydrates is analyzed. Theoretical calculations of the vibrational normal modes of the crystals of nitric acid monohydrate and the β-phases of the dihydrate and trihydrate are carried out, focusing the results in the regions below 175 cm⁻¹ and near the symmetric stretch of the nitrate ion NO₃⁻, around 1000–1100 cm⁻¹. A prediction of the corresponding infrared spectra is presented. A joint study is performed of the calculated normal modes, the predicted IR spectra, and the recently published Raman spectra of these compounds, based on symmetry considerations and using the atomic displacements associated to each normal mode as a further source of information. Although most of the modes present a strong mixture of atomic motions, assignments can be proposed for some of the vibrations.     

Raman spectra and molecular structure of silicates

The frequencies of the strong Raman bands of silicates corresponding to the Si₂O ₅ ^2? complex anion and the SiO₂ molecule have been determined. This revealed the presence of these anions in silicates with double rings or double chains and various types of layers and the presence of SiO₂ molecules in silica modifications, feldspars, zeolites, and zircon group orthosilicates. A similarity between the Raman spectra of olivine group orthosilicates and garnet and phenacite group orthosilicates was found. This similarity was attributed to the existence of distorted tetrahedra in all of these groups, having disordered orientation in the garnet and phenacite groups.     

Vibrational spectra of 2-biphenylmethanol. Spectrum simulation and molecular structure

The vibrational spectra of a solid crystalline sample of 2-biphenylmethanol have been measured at room temperature. The IR absorption spectra were recorded in the range 400 cm^–1–3600 cm^–1; Raman spectra were measured in the range 10 cm^–1–1640 cm^–1. The direct mechanical and optoelectronic problems were solved using the fragment method realized as Lev-100 software; the intensity distribution in the IR spectrum of 2-biphenylmethanol was obtained by the same method. The experimental Raman and IR absorption spectra were interpreted by analyzing the calculated data on the frequencies and forms of normal vibrations and their intensities in the IR spectra. IR absorption spectra were simulated for several models of 2-biphenylmethanol conformers that differ in the mutual orientation of fragments. Based on the results of simulation and comparison of the calculated and experimental spectra of conformers we suggested a model for the conformer realized in the solid phase under normal conditions.Original Russian Text Copyright © 2004 by L. M. Babkov, J. Baran, N. A. Davydova, J. I. Kukielskii, and S. V. TrukhachevTranslated from Zhurnal Strukturnoi Khimii, Vol. 45, No. 4, pp. 624–631, July–August, 2004.This revised version was published online in April 2005 with a corrected cover date.     

ATR IR spectra and structure of boundary layers of atactic polystyrene

The ATR IR spectra of solutions of atactic polystyrene in chloroform at the boundary with KRS-5 glass in the ranges 2800?C3100 and 1550?C1650cm^?1 are studied. It is shown that the parameters of orientation ?? and polarizability anisotropy ???? _p ? ???? _s of macromolecules estimated from the absorption and refractive indexes and the average complex polarizability of polystyrene boundary layers on KRS-5 vary in an extremum manner with the concentration of polystyrene in a solution. For dilute polystyrene solutions, a high degree of orientation of chains adsorbed on the glass surface is found. The inversion of the sign of polarizability anisotropy ???? _p ? ???? _s and an increase in orientation parameter ?? of macromolecules in boundary layers on KRS-5 are associated with the compression and interpenetration of coils during the transition from semidilute to concentrated solutions of polystyrene.     

Perturbation approach for frequency shifts in IR spectra of molecular clusters

A second order perturbation approach for the evaluation of the splitting and shifting of the infrared vibrational bands of molecular clusters, based on early publications of Buckingham, is presented. The Hamiltonian of the system comprises harmonic- and anharmonic intramolecular vibration terms, as well as the intermolecular potential. The anharmonic contributions of the intramolecular force field and the intermolecular potential are treated as a perturbation. In order to extend the applicability of the approach to homogeneous molecular clusters, the formalism of degenerate perturbation theory is employed. The new approach is applied to methanol clusters from dimer to hexamer for calculating the frequency shifts of the OH stretching mode (ω₁=3681.5 cm^?1), the CH₃ rocking mode (ω₇=1074.5 cm^?1), and the CO stretching mode (ω₈=1033.5 cm^?1). The numerical results compare favourably with experimental and previous theoretical data (except for ω₁), but with a tendency to overestimate the shifts.     

Infrared spectra and molecular structure: Part II. N-methyl- and N,N-dimethylaminobenzoic acids

Infrared spectra of N-methyl- and N,N-dimethylaminobenzoic acids have been investigated. All the acids except N,N-dimethylanthranilic acid showed neutral structures in the solid state. The N,N-dimethylanthranilic acid, however, exhibited a dipolar structure with strong intramolecular hydrogen bonding in the solid state while in solution it is neutral.     

Interpretation of IR spectra using complete sets of structure fragment compositions and an IR search system. 3. Analysis of large fragments

The results of identification of five-, six-, and seven-node fragments by the IR spectra of compounds are characterized by quantitative parameters: probability, reliability, and types of fragments. This analysis is carried out using the database containing more than 11,000 complete IR spectra and structures of organic compounds. It is analyzed how the fractions of correct fragments in the search result depend on the threshold occurrence and nonrandomness of fragment selection. Examples of statistical reliability of the revealed fragments are given. Translated fromZhumal Struktumoi Khimii, Vol. 38, No. 2, pp. 369–379, March–April, 1997.