Quantum-mechanical study of lead coordination in sulfur-rich proteins: mode and structure recognition in UV resonance Raman spectra

Resonance Raman spectra are computed applying the weighted gradient methodology with CIS and DFT gradients to determine the characteristic spectral patterns for Hg(II) and Pb(II) loaded sulfur-rich proteins while excited to a characteristic LMCT electronic transition band. A framework of structure-spectrum relationships is established to assess lead coordination modes via vibrational spectroscopy. Illustrative calculations on Hg(II) complexes agree with experimental data demonstrating reliability and accuracy of the applied methodology. In contrast to Hg(II) complexes, a unique 3-center-4-electron hypervalent C(β)H···S interaction present in lead-sulfur complexes was established and suggested to play a key role in the strong preference for lead versus other metal ions in lead specific proteins such as PbrR691. The characteristic Pb-S symmetric stretching bands, predicted without additional refinements such as scaling of a force field or frequencies, are found around 238 cm(-1) for 3-coordinated lead-sulfur domains and around 228 cm(-1) for 4-coordinated lead-sulfur domains. These results present an experimental challenge for clear detection of lead coordination via solely UVRR spectroscopy. In addition to predicted UVRR spectra, UVRR excitation profiles for relevant vibrational bands of lead-sulfur domains are presented.     

Theoretical Study of Electronic Structures and Spectra of Chalcogenido Complexes of Molybdenum, trans-Mo(Q)(2)(PH(3))(4) (Q = O, S, Se, Te)

Electronic structures of the title complexes have been studied using quantum chemical computations by different methods. It is shown that the results of Xalpha calculations agree well with expectations from classical ligand-field theory, but both are far from being in agreement with the results given by ab initio calculations. The HOMO in the ab initio Hartree-Fock molecular orbital diagrams of all these complexes is a chalcogen p(pi) lone pair orbital rather than the metal nonbonding d(xy)() orbital previously proposed. Electronic transition energies were calculated by CASSCF and CI methods. The results suggest that in the cases when Q = S, Se, and Te the lowest energy transitions should be those from the p(pi) lone pair orbitals to the metal-chalcogen pi orbitals. The calculated and observed electronic spectra of the oxo complex are in good agreement and very different from the spectra of the other complexes, and the lowest absorptions were accordingly assigned to transitions of different origins.     

Determining relative f and d orbital contributions to M-Cl covalency in MCl6(2-) (M = Ti, Zr, Hf, U) and UOCl5(-) using Cl K-edge X-ray absorption spectroscopy and time-dependent density functional theory

Chlorine K-edge X-ray absorption spectroscopy (XAS) and ground-state and time-dependent hybrid density functional theory (DFT) were used to probe the electronic structures of O(h)-MCl(6)(2-) (M = Ti, Zr, Hf, U) and C(4v)-UOCl(5)(-), and to determine the relative contributions of valence 3d, 4d, 5d, 6d, and 5f orbitals in M-Cl bonding. Spectral interpretations were guided by time-dependent DFT calculated transition energies and oscillator strengths, which agree well with the experimental XAS spectra. The data provide new spectroscopic evidence for the involvement of both 5f and 6d orbitals in actinide-ligand bonding in UCl(6)(2-). For the MCl(6)(2-), where transitions into d orbitals of t(2g) symmetry are spectroscopically resolved for all four complexes, the experimentally determined Cl 3p character per M-Cl bond increases from 8.3(4)% (TiCl(6)(2-)) to 10.3(5)% (ZrCl(6)(2-)), 12(1)% (HfCl(6)(2-)), and 18(1)% (UCl(6)(2-)). Chlorine K-edge XAS spectra of UOCl(5)(-) provide additional insights into the transition assignments by lowering the symmetry to C(4v), where five pre-edge transitions into both 5f and 6d orbitals are observed. For UCl(6)(2-), the XAS data suggest that orbital mixing associated with the U 5f orbitals is considerably lower than that of the U 6d orbitals. For both UCl(6)(2-) and UOCl(5)(-), the ground-state DFT calculations predict a larger 5f contribution to bonding than is determined experimentally. These findings are discussed in the context of conventional theories of covalent bonding for d- and f-block metal complexes.     

Electronic spectral studies of molybdenyl complexes. 2. MCD spectroscopy of [MoOS4]- centers

Magnetic circular dichroism (MCD) and absorption spectroscopies have been used to probe the electronic structure of [PPh4][MoO(p-SC6H4X)4] (X = H, Cl, OMe) and [PPh4][MoO(edt)2] complexes (edt = ethane-1,2-dithiolate). The results of density functional calculations (DFT) on [MoO(SMe)4]- and [MoO(edt)2]- model complexes were used to provide a framework for the interpretation of the spectra. Our analysis shows that the lowest energy transitions in [MoVOS4] chromophores (S4 = sulfur donor ligand) result from S-->Mo charge transfer transitions from S valence orbitals that lie close to the ligand field manifold. The energies of these transitions are strongly dependent on the orientation of the S lone-pair orbitals with respect to the Mo atom that is determined by the geometry of the ligand backbone. Thus, the lowest energy transition in the MCD spectrum of [PPh4][MoO(p-SC6H4X)4] (X = H) occurs at 14,800 cm-1, while that in [PPh4][MoO(edt)2] occurs at 11,900 cm-1. The identification of three bands in the absorption spectrum of [PPh4][MoO(edt)2] arising from LMCT from S pseudo-sigma combinations to the singly occupied Mo 4d orbital in the xy plane suggests that there is considerable covalency in the ground-state electronic structures of [MoOS4] complexes. DFT calculations on [MoO(SMe)4]- reveal that the singly occupied HOMO is 53% Mo 4dxy and 35% S p for the equilibrium C4 geometry. For [MoO(edt)2]- the steric constraints imposed by the edt ligands result in the S pi orbitals being of similar energy to the Mo 4d manifold. Significant S pseudo-sigma and pi donation may also weaken the Mo identical to O bond in [MoOS4] centers, a requirement for facile active site regeneration in the catalytic cycle of the DMSO reductases. The strong dependence of the energies of the bands in the absorption and MCD spectra of [PPh4][MoO(p-SC6H4X)4] (X = H, Cl, OMe) and [PPh4][MoO(edt)2] on the ligand geometry suggests that the structural features of the active sites of the DMSO reductases may result in an electronic structure that is optimized for facile oxygen atom transfer.     

Correlation between the 6Li,15N coupling constant and the coordination number at lithium

The 6Li,15N coupling constants of lithium amide dimers and their mixed complexes with n-butyllithium, formed from five different chiral amines derived from (S)-[15N]phenylalanine, were determined in diethyl ether (Et2O), tetrahydrofuran (THF) and toluene. Results of NMR spectroscopy studies of these complexes show a clear difference in 6Li,15N coupling constants between di-, tri- and tetracoordinated lithium atoms. The lithium amide dimers with a chelating ether group exhibit 6Li,15N coupling constants of approximately 3.8 and approximately 5.5 Hz for the tetracoordinated and tricoordinated lithium atoms, respectively. The lithium amide dimers with a chelating thioether group show distinctly larger 6Li,15N coupling constants of approximately 4.4 Hz for the tetracoordinated lithium atoms, and the tricoordinated lithium atoms have smaller 6Li,15N coupling constants, approximately 4.9 Hz, than their ether analogues. In diethyl ether and tetrahydrofuran, mixed dimeric complexes between the lithium amides and n-butyllithium are formed. The tetracoordinated lithium atoms of these complexes have 6Li,15N coupling constants of approximately 4.0 Hz, and the 6Li,15N coupling constants of the tricoordinated lithium atoms differ somewhat, depending on whether the chelating group is an ether or a thioether; approximately 5.1 and approximately 4.6 Hz, respectively. In toluene, mixed trimeric complexes are formed from two lithium amide moieties and one n-butyllithium. In these trimers, two lithium atoms are tricoordinated with 6Li,15N coupling constants of approximately 4.6 Hz and one lithium is dicoordinated with 6Li,15N coupling constants of approximately 6.5 Hz.     

Structures, energetics, and spectra of hydrated hydroxide anion clusters

The structures, energetics, electronic properties, and spectra of hydrated hydroxide anions are studied using density functional and high level ab initio calculations. The overall structures and binding energies are similar to the hydrated anion clusters, in particular, to the hydrated fluoride anion clusters except for the tetrahydrated clusters and hexahydrated clusters. In tetrahydrated system, tricoordinated structures and tetracoordinated structures are compatible, while in pentahydrated systems and hexahydrated systems, tetracoordinated structures are stable. The hexahydrated system is similar in structure to the hydrated chloride cluster. The thermodynamic quantities (enthalpies and free energies) of the clusters are in good agreement with the experimental values. The electronic properties induced by hydration are similar to hydrated chloride anions. The charge-transfer-to-solvent energies of these hydrated-hydroxide anions are discussed, and the predicted ir spectra are used to explain the experimental data in terms of the cluster structures. The low-energy barriers between the conformations along potential energy surfaces are reported.     

DFT and CI Studies of Electronic Structure and Photoionization of Sc,Ti, V,Cr, and Co Tris-β-diketonate Complexes

Orbital structure calculations were performed in the density functional theory (DFT) approximation for neutral complexes of Sc, Ti, V, Cr, and Co tris-β-diketonates; for the first three compounds, the structures of the ground ionic states and ionization energies were calculated in the CI approximation with decomposition on the orbitals of DFT. The sequence of the highest occupied orbitals found by this procedure coincides with the order of bands in the PES spectrum, while in the SCF-HF ab initio method, it does not. After the electron removal, all orbitals are stabilized by about 4.5 eV; for the vanadium complex, the removal of one d electron leads to the greatest stabilization of the remaining occupied orbital, which is essentially a d orbital. In CI calculations, using the DFT orbitals for decomposition does not lead to significantly better agreement with experiment when compared to the single-determinantal approximation and to the CI method with orbitals of the ab initio approximation.Original Russian Text Copyright © 2004 by I. S. Osmushko and V. I. Vovna__________Translated from Zhurnal Strukturnoi Khimii, Vol. 45, No. 5, pp. 783–791, September–October, 2004.     

Extended charge decomposition analysis and its application for the investigation of electronic relaxation

A general and comprehensive molecular orbital method for the investigation of the electronic relaxation contribution to redox processes is presented. This method is based on the population analysis of the molecular orbitals of the final electronic state in terms of the occupied and unoccupied molecular orbitals of the Koopmans’ state. The DFT calculations for oxidation and reduction of transition-metal species indicate a dramatic magnitude of electronic relaxation in these systems. The passive molecular orbitals play a more significant role in electronic relaxation than the redox-active molecular orbital that directly participates in the redox process. The mechanism of electronic relaxation in the oxidation of Fe^II and Cu^I species varies from the ligand to metal 3d charge transfer (LMCT) interactions to the ligand to metal 4s,4p LMCT. For systems with significant electronic delocalization, electronic relaxation becomes smaller leading to much smaller contributions to the redox processes. Dedication: This contribution is to celebrate Philip Stephen’s seminal contributions to theory and experiment. An erratum to this article can be found at     

Probing lead(II) bonding environments in 4-substituted pyridine adducts of (2,6-Me2C6H3S)2Pb: an X-ray structural and solid-state 207Pb NMR study

The effect of subtle changes in the sigma-electron donor ability of 4-substituted pyridine ligands on the lead(II) coordination environment of (2,6-Me(2)C(6)H(3)S)(2)Pb (1) adducts has been examined. The reaction of 1 with a series of 4-substituted pyridines in toluene or dichloromethane results in the formation of 1:1 complexes [(2,6-Me(2)C(6)H(3)S)(2)Pb(pyCOH)](2) (3), [(2,6-Me(2)C(6)H(3)S)(2)Pb(pyOMe)](2) (4), and (2,6-Me(2)C(6)H(3)S)(2)Pb(pyNMe(2)) (5) (pyCOH = 4-pyridinecarboxaldehyde; pyOMe = 4-methoxypyridine; pyNMe2 = 4-dimethylaminopyridine), all of which have been structurally characterized by X-ray crystallography. The structures of 3 and 4 are dimeric and have psi-trigonal bipyramidal S(3)N bonding environments, with the 4-substituted pyridine nitrogen and bridging sulfur atoms in axial positions and two thiolate sulfur atoms in equatorial sites. Conversely, compound 5 is monomeric and exhibits a psi-trigonal pyramidal S(2)N bonding environment at lead(II). The observed structures may be rationalized in terms of a simple valence bond model and the sigma-electron donor ability of the 4-pyridine ligands as derived from the analysis of proton affinity values. Solid-state (207)Pb NMR experiments are applied in combination with density functional theory (DFT) calculations to provide further insight into the nature of bonding in 4, 5, and (2,6-Me(2)C(6)H(3)S)(2)Pb(py)(2) (2). The lead chemical shielding (CS) tensor parameters of 2, 4, and 5 reveal some of the largest chemical shielding anisotropies (CSA) observed in lead coordination complexes to date. DFT calculations using the Amsterdam Density Functional (ADF) program, which take into account relativistic effects using the zeroth-order regular approximation (ZORA), yield lead CS tensor components and orientations. Paramagnetic contributions to the lead CS tensor from individual pairs of occupied and virtual molecular orbitals (MOs) are examined to gain insight into the origin of the large CSA. The CS tensor is primarily influenced by mixing of the occupied MOs localized on the sulfur and lead atoms with virtual MOs largely comprised of lead 6p orbitals.     

Structures and spectroscopic properties of bis(phthalocyaninato) yttrium and lanthanum complexes: theoretical study based on density functional theory calculations

Density functional theory (DFT) calculations were carried out to describe the molecular structures, molecular orbitals, atomic charges, UV-vis absorption spectra, IR, and Raman spectra of bis(phthalocyaninato) rare earth(III) complexes M(Pc)(2) (M = Y, La) as well as their reduced products [M(Pc)(2)](-) (M = Y, La). Good consistency was found between the calculated results and experimental data. Reduction of the neutral M(Pc)(2) to [M(Pc)(2)]- induces the reorganization of their orbitals and charge distribution and decreases the inter-ring interaction. With the increase of ionic size from Y to La, the inter-ring distance of both the neutral and reduced double-decker complexes M(Pc)(2) and [M(Pc)(2)](-) (M = Y, La) increases, the inter-ring interaction and splitting of the Q bands decrease, and corresponding bands in the IR and Raman spectra show a red shift. The orbital energy level and orbital nature of the frontier orbitals are also described and explained in terms of atomic character. The present work, representing the first systemic DFT study on the bis(phthalocyaninato) yttrium and lanthanum complexes sheds further light on clearly understanding structure and spectroscopic properties of bis(phthalocyaninato) rare earth complexes.     

High covalence in CuSO4 and the radicalization of sulfate: an X-ray absorption and density functional study

Sulfur K-edge X-ray absorption spectroscopy (XAS) of anhydrous CuSO(4) reveals a well-resolved preedge transition feature at 2478.8 eV that has no counterpart in the XAS spectra of anhydrous ZnSO(4) or copper sulfate pentahydrate. Similar but weaker preedge features occur in the sulfur K-edge XAS spectra of [Cu(itao)SO(4)] (2478.4 eV) and [Cu[(CH(3))(6)tren]SO(4)] (2477.7 eV). Preedge features in the XAS spectra of transition metal ligands are generally attributed to covalent delocalization of a metal d-orbital hole into a ligand-based orbital. Copper L-edge XAS of CuSO(4) revealed that 56% of the Cu(II) 3d hole is delocalized onto the sulfate ligand. Hybrid density functional calculations on the two most realistic models of the covalent delocalization pathways in CuSO(4) indicate about 50% electron delocalization onto the sulfate oxygen-based 2p orbitals; however, at most 14% of that can be found on sulfate sulfur. Both experimental and computational results indicated that the high covalence of anhydrous CuSO(4) has made sulfate more like the radical monoanion, inducing an extensive mixing and redistribution of sulfur 3p-based unoccupied orbitals to lower energy in comparison to sulfate in ZnSO(4). It is this redistribution, rather than a direct covalent interaction between Cu(II) and sulfur, that is the origin of the observed sulfur XAS preedge feature. From pseudo-Voigt fits to the CuSO(4) sulfur K-edge XAS spectrum, a ground-state 3p character of 6% was quantified for the orbital contributing to the preedge transition, in reasonable agreement with the DFT calculation. Similar XAS fits indicated 2% sulfur 3p character for the preedge transition orbitals in [Cu(itao)SO(4)] and [Cu[(CH(3))(6)tren]SO(4)]. The covalent radicalization of ligands similar to sulfate, with consequent energy redistribution of the virtual orbitals, represents a new mechanism for the induction of ligand preedge XAS features. The high covalence of the Cu sites in CuSO(4) was found to be similar to that of Cu sites in oxidized cupredoxins, including its anistropic nature, and can serve as the simplest inorganic examples of intramolecular electron-transfer processes.     

When Are Tricoordinated PdII Species Accessible? Stability Trends and Mechanistic Consequences

The ease of access to Pd(II) tricoordinated species (whether intermediates or transition states) in organometallic and catalytic reactions has been assessed with DFT methods to analyze the relative stability of tricoordinated [PdArXL] complexes versus their tetracoordinated derivatives formed by two most common processes of filling the fourth coordination site: solvent coordination (with tetrahydrofuran), or dimerization to give [Pd2Ar2(micro-X)2L2]. The effect of each ligand (L=PH3, PMe3, PPh3, PtBu3, 1-AdPtBu2; Ar=C6F5, C6H5, C6H4OH, C6H4OCH3, C6H4NH2, C6H2(NH2)3; X=F, Cl, Br, I, OH, SH, NH2, PH2, CH3) on these two processes has been systematically considered, and the results have been compared with the experimental information available. The trends observed, match the experimental results and suggest that: 1) the formation of bridged dimeric complexes is strongly preferred; 2) electronic effects are in general less important compared to steric effects; 3) when steric effects prevent formation of bridges and coordination of a fourth external ligand, intramolecular agostic interactions are established with C--H groups of one ligand; 4) as an exception, for X=NR2 true tricoordinated complexes, not showing agostic interactions, become stable. In the later case NR2 seems to act as pi-donor with its lone pair to the empty orbital at the fourth coordination site of palladium, thus avoiding a true 14e configuration for the tricoordinated PdII complex.     

A time-dependent density functional theory investigation on the nature of the electronic transitions involved in the nonlinear optical response of [Ru(CF3CO2)3T] (T = 4'-(C6H4-p-NBu2)-2,2':6',2'-terpyridine)

We report a theoretical study based on density functional theory (DFT) and time-dependent DFT (TDDFT) calculations on the nature and role of the absorption bands involved in the nonlinear optical response of the complexes [Ru(CF3CO2)3T] (T = T1, T2; T1 = 4'-(C6H4-p-NBu2)-2,2':6',2'-terpyridine, T2 = 4'-(C6H4-p-NMe2)-2,2':6',2'-terpyridine). Geometry optimizations, performed without any symmetry constraints, confirm a twisting of the -C6H4-p-NBu2 moiety with respect to the plane of the chelated terpyridine. Despite this lack of strong pi interaction, TDDFT excited states calculations of the electronic spectrum in solution provide evidence of a relevant role of the NBu2 donor group in the low-energy LMCT band at 911 nm. Calculations also show that the two bands at higher energy (508 and 455 nm) are not attributable only to LMCT and ILCT transitions but to a mixing of ILCT/MLCT and ILCT/pi-pi* transitions, respectively. The 911 nm LMCT band, appearing at lower wavelength of the second harmonic (670 nm) of the EFISH experiment, controls the negative value of the second-order NLO response. This is confirmed by our calculations of the static component beta0(zzz) of the quadratic hyperpolarizability tensor, showing a large positive value. In addition we have found that the increase of the dipole moment upon excitation occurs, in all the characterized transitions, along the dipole moment axis, thus explaining why the EFISH and solvatochromic experimental values of the quadratic hyperpolarizability agree as sign and value.     

异构的蒽乙烯单钌配合物:合成与表征、电化学、光谱性质及理论计算

通过9-蒽乙炔基及2-蒽乙炔基分别与有机金属氢化物羰基氯氢三(三苯基膦)钌(Ⅱ)[Ru HCl(CO)(PPh_3)_3]反应,再使用三甲基膦(PMe_3)交换配体,合成并表征了具有同分异构结构的蒽乙烯单钌配合物1和2,其中配合物2的结构还经X射线单晶衍射的确证,结合理论计算研究了其电学及光学性质。密度泛函理论(DFT)优化配合物1和2的电子结构显示,在两个异构体中钌乙烯基与蒽配体呈现明显不同的构型,前线分子轨道图显示最高已占分子轨道(HOMO)上电子离域于整个分子骨架,其中以配体蒽乙烯基所占比例为90%,表明蒽乙烯基配体参与该配合物氧化进程的比例很大。电化学实验结果表明,配合物1的氧化还原可逆性明显低于配合物2。配合物1和2及前体分子1b和2b的电子吸收光谱结果表明,配合物与前体分子相比光谱性质呈现明显变化,其在紫外区域的强吸收峰明显减弱,而在长波长方向均出现了弱而宽的吸收峰,该吸收峰已经通过含时密度泛函理论(TDDFT)计算将其归属于π→π*以及金属配位电荷转移(MLCT)跃迁吸收,均来自于HOMO→LUMO跃迁产生。荧光发射光谱揭示金属配位之后其荧光强度和荧光量子产率明显降低。CCDC:1488284,2。     

Photocatalytic activity of the RuO2-dispersed composite p-block metal oxide LiInGeO4 with d10-d10 configuration for water decomposition

The ruthenium oxide-loaded composite p-block metal oxide LiInGeO4 with d10-d10 configuration exhibited high photocatalytic activity for the overall splitting of water to produce H2 and O2 under UV irradiation. Changes in the photocatalytic activity with the calcination temperature of LiInGeO4, the amount of RuO2 loaded, and the states of RuO2 indicated that the combination of highly crystallized LiInGeO4 and a high dispersion of RuO2 particles resulted in high photocatalytic activity. Structurally, LiInGeO4 contained heavily distorted InO6 octahedra and GeO4 tetrahedra, generating a dipole moment inside. The high photocatalytic performance of RuO2-loaded LiInGeO4 supports the existing view that the photocatalytic activity correlates with the dipole moment. The DFT calculation showed that the top of the valence band (HOMO) was composed of the O 2p orbital while the bottom of the conduction band (LUMO) was formed by the hybridized In 5s5p + Ge 4s4p + O 2p orbitals. The highly dispersed conduction band, indicative of a high mobility of photoexcited electrons, was responsible for the high photocatalytic performance.     

[Cu6(NGuaS)6]2+ and its oxidized and reduced derivatives: Confining electrons on a torus

The hexanuclear thioguanidine mixed‐valent copper complex cation [Cu₆(NGuaS)₆]⁺² (NGuaS = o‐SC₆H₄NC(NMe₂)₂) and its oxidized/reduced states are theoretically analyzed by means of density functional theory (DFT) (TPSSh + D3BJ/def2‐TZV (p)). A detailed bonding analysis using overlap populations is performed. We find that a delocalized Cu‐based ring orbital serves as an acceptor for donated S p electrons. The formed fully delocalized orbitals give rise to a confined electron cloud within the Cu₆S₆ cage which becomes larger on reduction. The resulting strong electrostatic repulsion might prevent the fully reduced state. Experimental UV/Vis spectra are explained using time‐dependent density functional theory (TD‐DFT) and analyzed with a natural transition orbital analysis. The spectra are dominated by MLCTs within the Cu₆S₆ core over a wide range but LMCTs are also found. The experimental redshift of the reduced low energy absorption band can be explained by the clustering of the frontier orbitals. © 2017 Wiley Periodicals, Inc.     

Nature of the oxomolybdenum-thiolate pi-bond: implications for Mo-S bonding in sulfite oxidase and xanthine oxidase

The electronic structure of cis,trans-(L-N(2)S(2))MoO(X) (where L-N(2)S(2) = N,N'-dimethyl-N,N'-bis(2-mercaptophenyl)ethylenediamine and X = Cl, SCH(2)C(6)H(5), SC(6)H(4)-OCH(3), or SC(6)H(4)CF(3)) has been probed by electronic absorption, magnetic circular dichroism, and resonance Raman spectroscopies to determine the nature of oxomolybdenum-thiolate bonding in complexes possessing three equatorial sulfur ligands. One of the phenyl mercaptide sulfur donors of the tetradentate L-N(2)S(2) chelating ligand, denoted S(180), coordinates to molybdenum in the equatorial plane such that the OMo-S(180)-C(phenyl) dihedral angle is approximately 180 degrees, resulting in a highly covalent pi-bonding interaction between an S(180) p orbital and the molybdenum d(xy) orbital. This highly covalent bonding scheme is the origin of an intense low-energy S --> Mo d(xy) bonding-to-antibonding LMCT transition (E(max) approximately 16000 cm(-)(1), epsilon approximately 4000 M(-)(1) cm(-)(1)). Spectroscopically calibrated bonding calculations performed at the DFT level of theory reveal that S(180) contributes approximately 22% to the HOMO, which is predominantly a pi antibonding molecular orbital between Mo d(xy) and the S(180) p orbital oriented in the same plane. The second sulfur donor of the L-N(2)S(2) ligand is essentially nonbonding with Mo d(xy) due to an OMo-S-C(phenyl) dihedral angle of approximately 90 degrees. Because the formal Mo d(xy) orbital is the electroactive or redox orbital, these Mo d(xy)-S 3p interactions are important with respect to defining key covalency contributions to the reduction potential in monooxomolybdenum thiolates, including the one- and two-electron reduced forms of sulfite oxidase. Interestingly, the highly covalent Mo-S(180) pi bonding interaction observed in these complexes is analogous to the well-known Cu-S(Cys) pi bond in type 1 blue copper proteins, which display electronic absorption and resonance Raman spectra that are remarkably similar to these monooxomolybdenum thiolate complexes. Finally, the presence of a covalent Mo-S pi interaction oriented orthogonal to the MOO bond is discussed with respect to electron-transfer regeneration in sulfite oxidase and Mo=S(sulfido) bonding in xanthine oxidase.     

Structure, bonding, and reactivity of Ti and Zr amidate complexes: DFT and X-ray crystallographic studies

Easily prepared and highly modular organic amide proligands have been used to synthesize a series of new bis(amidate)-bis(amido) Ti and Zr complexes via protonolysis. These complexes have been structurally characterized by NMR spectroscopy and X-ray crystallography. The solid-state molecular structures of these complexes indicate that the amidate ligands bind to the metal centers in an exclusively bidentate fashion, resulting in discrete monomeric species. Geometric isomerism in these species is highly dependent upon the steric characteristics of the proligands utilized in the synthesis. In solution, these complexes are observed to isomerize on the NMR time scale, with one isomer being predominant. Bonding in the bis(amidate)-bis(amido) complexes was investigated by DFT calculations. The geometric isomers predicted by theory matched the experimentally observed results, within experimental error. The orbitals associated with amidate-metal bonding are energetically well below the frontier orbitals. The HOMO in these complexes is a pi orbital associated with amido ligand-to-metal bonding character, while the LUMO in all cases is a vacant d orbital on the metal center.     

Electronic structure and ionization energies of palladium and platinum N-heterocyclic carbene complexes

Density functional methods have been used to calculate the geometries, electronic structure and ionization energies (IE) of N-heterocyclic carbene complexes of palladium and platinum, [M(CN2R2C2H2)2](M = Pd, Pt; R = H, Me, Bu t). Agreement with X-ray structures (R = Bu t) was good. Calculated IE agreed well with the photoelectron (PE) spectra (R = Bu t); metal bands were calculated to be within 0.25 eV of the experimental values, whereas the higher lying ligand bands deviated by up to 0.9 eV. Spin-orbit methods were needed to achieve this level of agreement for the Pt complex, but the calculations were found to underestimate the spin-orbit splitting somewhat. The principal metal-ligand bonding is between the carbene lone pair HOMO and a (d(z2)+ s) hybrid on the metal. The metal p(z) orbital contributes very little to the bonding. The metal d(xz,yz) orbitals mix primarily with the filled pi3 orbitals on the ligands and secondarily with the empty pi5 orbitals. Consequently they are little stabilized in comparison to the metal d(xy,x2- y2) orbitals, which are non-bonding in the complex. The first PE band for both the Pd and Pt complexes is from ionization of a (s - d(z2)) hybrid orbital. The IE is greater for Pt than for Pd on account of the post-lanthanide relativistic stabilization of the Pt 6s orbital.     

Physical, photophysical and structural properties of ruthenium(II) complexes containing a tetradentate bipyridine ligand

The focus of this report is the synthesis and properties of two new analogues of ruthenium(ii) tris-bipyridine, a monomer and dimer. The complexes contain the ligand 6,6'-(ethan-1,2-diyl)bis-2,2'-bipyridine (O-bpy) which contains two bipyridine units bridged in the 6,6' positions by an ethylene bridge. Crystal structures of the two complexes formulated as [Ru(bpy)(O-bpy)](PF6)2 and [(Ru(bpy)2)2(O-bpy)](PF6)4 reveal structures of lower symmetry than D3 which affects the electronic properties of the complexes as substantiated by density functional theory (DFT) and time dependent density functional theory (TDDFT) calculations. The HOMO lies largely on the ruthenium center; the LUMO spreads its electron density over the bipyridine units, but not equally in the mixed O-bpy-bpy complexes. Calculated Vis/UV spectra using TDDFT methods agree with experimental spectra. The lowest lying triplet excited state for [Ru(bpy)(O-bpy)](PF6)2 is 3MC resulting in a low emission quantum yield and a large chloride ion photosubstitution quantum yield.