Model calculations of STM imaging and manipulation of oxygen on Pt(111)

We study tip-adsorbate–substrate interactions in scanning tunneling microscopy (STM) manipulation and imaging, and the influence of impurities on the images. Thence, we perform molecular dynamics simulations and calculate qualitative STM images for oxygen on Pt(1 1 1) surface. The adsorption site of the oxygen molecule is found to be in accordance with ab initio calculations. The calculated STM image has a good resemblance to the experimental ones. The contamination of the tip by oxygen or water alters the STM image strongly. Molecular dynamics simulations on manipulations of oxygen on the surface reveal several mechanisms of how molecular oxygen can be either produced or decomposed with STM tip. Finally, we find out that transfer of oxygen from the surface to an STM tip is not very probable.     

Phosphorus and hydrogen atoms on the (0 0 1) surface of silicon: A comparative scanning tunnelling microscopy study of surface species with a single dangling bond

We present a comparative scanning tunnelling microscopy (STM) study of two features on the Si(0 0 1) surface with a single dangling bond. One feature is the Si-P heterodimer—a single surface phosphorus atom substituted for one Si atom of a Si-Si dimer. The other feature is the Si-Si-H hemihydride—a single hydrogen atom adsorbed to one Si atom of a Si-Si dimer. Previous STM studies of both surface species have reported a nearly identical appearance in STM which has hampered an experimental distinction between them to date. Using voltage-dependent STM we are able to distinguish and identify both heterodimer and hemihydride on the Si(0 0 1) surface. This work is particularly relevant for the fabrication of atomic-scale Si:P devices by STM lithography on the hydrogen terminated Si(0 0 1):H surface, where it is important to monitor the distribution of single P dopants in the surface. Based on the experimental identification, we study the lateral P diffusion out of nanoscale reservoirs prepared by STM lithography.     

STM manipulation of a subphthalocyanine double-wheel molecule on Au(111)

A new class of double-wheel molecules is manipulated on a Au(111) surface by the tip of a scanning tunneling microscope (STM) at low temperature. The double-wheel molecule consists of two subphthalocyanine wheels connected by a central rotation carbon axis. Each of the subphthalocyanine wheels has a nitrogen tag to monitor its intramolecular rolling during an STM manipulation sequence. The position of the tag can be followed by STM, allowing us to distinguish between the different lateral movements of the molecule on the surface when manipulated by the STM tip.     

Scanning tunnelling microscopy imaging and modification of hydrogen-passivated Ge(100) surfaces

Scanning tunnelling microscopy (STM) study and modification of hydrogen (H)-passivated Ge(100) surfaces have been investigated. Thermal oxidation procedures were used to minimise surface roughness. Ge samples were passivated in HF solution after thermal oxidation. STM and atomic force microscope (AFM) imaging showed that, using HF etching after thermal oxidation, we can obtain a natural H-passivatedtopographically and chemically flat Ge(100) surface. The root-mean-square (rms) roughness ofa H-passivatedGe(100) surface measured both by STM and AFM is less than 2 ?. Electric properties of H-passivatedGe(100) surfaces were studied by scanning tunnelling spectroscopy (STS) in nitrogen ambient. STS showed that the H-passivated Ge surfaces were not pinned. Modification on H-passivated Ge(100) surfaces was carried out using STM by applying an electric voltage between the sample and tip in air. Modified features were characterised by STM and AFM imaging. On the H-passivated Ge(100) surfaces, stable, low-voltage, nanometer-scale modified features can be produced.     

STM图像的理论模拟

本文简要综述了STM基本理论和模拟方法 ,着重介绍了我们的一些工作 ,构造团簇模型和采用第一性原理方法 (DV LDF) ,模拟出不同取向C60 和它吸附在金属和半导体表面的STM图像 ,理论模拟结果都反映出了STM实验图像的主要特征     

简单紧凑高刚性扫描隧道显微镜的研制

本文展示了一台自主研制的扫描隧道显微镜,它的主要特色是利用了一个内壁抛光的蓝宝石导向管作为扫描头的导轨,从而形成了较短的探针到样品的机械回路. 该导向管里面是一个被弹簧片夹持的方形滑杆,而压电扫描头安装在该滑杆上使得扫描隧道显微镜本身结构比较简单、紧凑、刚性. 同时蓝宝石良好的热导率又有利于提高显微镜的热稳定性. 为了证明该扫描隧道显微镜的性能,本文给出了高质量的石墨原子分辨率图像.     

Selective analysis of molecular states by functionalized scanning tunneling microscopy tips

Selective analysis of molecular states in scanning tunneling microscopy (STM) has so far been achieved in a few cases by tuning the bias range of the STM in high-resolution measurements. Correspondingly, perylene adsorbed in a close-packed monolayer on Ag(110) is imaged mainly through the pi states of the molecule. By contrast, functionalizing the STM tip with a perylene molecule leads to a mismatch between the energy levels of the STM tip and the molecule adsorbates and, instead, images only the metal states of the underlying silver surface. The observation opens a route for better energy selectivity in electron transport measurements through organic interfaces.     

Electrochemical behaviour of gold modified with contaminated TMP amine adlayers studied by STM, CV, EPR

Scanning tunnelling microscopy (STM), cyclic voltammetry (CV) and electron paramagnetic resonance spectroscopy (EPR) were used to investigate the influence of the TMP amine derivative on Au (1 1 1). The STM results show that the gold surface covered by the adlayer of the TMP derivative is easily modified (holes formation) after increasing the bias voltage to 0.5 V. The CV and EPR results show the electrochemical origin of observed STM topography changes. It is suggested that TMP could be oxidized to the nitroxyl TEMPO radical which adsorbs on Au in the form of an oxoammonium cation. Such an oxoammonium cation at the potential of 0.5 V forms a permanent complex of gold and the nitroxyl radical which could be easily desorbed during STM imaging.     

Are signal intensity and homogeneity useful parameters for distinguishing between benign and malignant soft tissue masses on MR images?: Objective evaluation by means of texture analysis

Objectives

To objectively identify possible differences in the signal characteristics of benign and malignant soft tissue masses (STM) on magnetic resonance (MR) images by means of texture analysis and to determine the value of these differences for computer-assisted lesion classification.

Method

Fifty-eight patients with histologically proven STM (benign, n=30; malignant, n=28) were included. STM texture was analyzed on routine T1-weighted, T2-weighted and short tau inversion recovery (STIR) images obtained with heterogeneous acquisition protocols. Fisher coefficients (F) and the probability of classification error and average correlation coefficients (POE+ACC) were calculated to identify the most discriminative texture features for separation of benign and malignant STM. F>1 indicated adequate discriminative power of texture features. Based on the texture features, computer-assisted classification of the STM by means of k-nearest-neighbor (k-NN) and artificial neural network (ANN) classification was performed, and accuracy, sensitivity and specificity were calculated.

Results

Discriminative power was only adequate for two texture features, derived from the gray-level histogram of the STIR images (first and 10th gray-level percentiles). Accordingly, the best results of STM classification were achieved using texture information from STIR images, with an accuracy of 75.0% (sensitivity, 71.4%; specificity, 78.3%) for the k-NN classifier, and an accuracy of 90.5% (sensitivity, 91.1%; specificity, 90.0%) for the ANN classifier.

Conclusion

Texture analysis revealed only small differences in the signal characteristics of benign and malignant STM on routine MR images. Computer-assisted pattern recognition algorithms may aid in the characterization of STM, but more data is necessary to confirm their clinical value.     

Scanning tunneling microscopy and molecular orbital calculation of pentacene molecules adsorbed on the Si(100)2×1 surface

Adsorption of the organic molecule pentacene on Si(100)2×1 surfaces was imaged using scanning tunneling microscopy (STM). The molecular images exhibit distinct shapes corresponding to the expected shapes for adsorption configurations. Semi-empirical molecular orbital (MO) calculations reveal a local surface density of states for the adsorbed pentacene on the Si surface. In the cases where the pentacene molecule is adsorbed on an Si dimer row, the calculated MOs are in good agreement with the molecular images observed in STM. In the case of pentacene adsorbed on two or three Si-dimer rows, however, the MOs of the pentacene do not correlate directly with the observed STM images. It is thus considered that the STM images are produced by a combination of Si dimer states and MO.     

Identifying the electronic properties of the Ge(111)-(2×1) surface by low-temperature scanning tunneling microscopy

We present the results of our low-temperature scanning tunneling microscopy (STM) investigation of the clean Ge(111) surface. Our experiments enable, for the first time, STM observation of one-dimensional surface screening around surface defects. We identify the dominating role of surface states in the low-temperature STM imaging as well as the important influence of nonequilibrium kinetics on the measured tunneling spectra.     

STM图像的理论模拟

本文简要综述了STM基本理论和模拟方法 ,着重介绍了我们的一些工作 ,构造团簇模型和采用第一性原理方法 (DV LDF) ,模拟出不同取向C60 和它吸附在金属和半导体表面的STM图像 ,理论模拟结果都反映出了STM实验图像的主要特征     

Phosphine dissociation on the Si(001) surface

Density functional calculations are performed to identify features observed in STM experiments after phosphine (PH3) dosing of the Si(001) surface. On the basis of a comprehensive survey of possible structures, energetics, and simulated STM images, three prominent STM features are assigned to structures containing surface bound PH2, PH, and P, respectively. Collectively, the assigned features outline for the first time a detailed mechanism of PH3 dissociation and P incorporation on Si(001).     

Visualization of electron orbitals in scanning tunneling microscopy

Scanning tunneling microscopy (STM) is one of the main techniques for direct visualization of the surface electronic structure and chemical analysis of multi-component surfaces at the atomic scale. This review is focused on the role of the tip orbital structure and tip-surface interaction in STM imaging with picometer spatial resolution. Fabrication of STM probes with well-defined structure and selective visualization of individual electron orbitals in the STM experiments with controlled tunneling gap and probe structure are demonstrated.     

Scanning tunnelling microscopy of charge-density waves in transition metal chalcogenides

We have used scanning tunnelling microscopes (STMs) operating at liquid helium and liquid nitrogen temperatures to image the charge-density waves (CDWs) in transition metal chalcogenides. The layer structure dichalcogenides TaSe₂, TaS₂, NbSe₂, VSe₂, TiSe₂ and TiS₂ have been studied including representative polytype phases such as 1T, 2H and 4Hb. Experimental results are presented for the complete range of CDW amplitudes and structures observed in these materials. In most cases both the CDW and the surface atomic structure have been simultaneously imaged. Results on the trichalcogenide NbSe₃ are also included.

The formation of the CDW along with the associated periodic lattice distortion gaps the Fermi surface (FS) and modifies the local density-of-states (LDOS) detected by the tunnelling process. The tunnelling microscopes have been operated mostly in the constant current mode which maps the LDOS at the position of the tunnelling tip. The relative amplitudes and profiles of the CDW superlattice and the atomic lattice have been measured and confirm on an atomic scale the CDW structures predicted by X-ray, electron and neutron diffraction. The absolute STM deflections are larger than expected for the CDW induced modifications of the LDOS above the surface and possible enhancement mechanisms are reviewed.

In the 2H trigonal prismatic coordination phases the CDWs involve a relatively small charge transfer and the atomic structure dominates the STM images. In the 1T octahedral coordination phases the charge transfer is large and the CDW structure dominates the STM image with an anomalously large enhancement of the STM profile. Systematic comparison of the STM profiles with band structure and FS information is included.

In the case of the 4Hb mixed coordination phases at the lowest temperatures two nearly independent CDWs form in alternate sandwiches. STM studies on 4Hb crystals with both octahedral and trigonal prismatic surface sandwiches have been carried out. The STM scans detect the relative strengths of the two CDWs as well as the interactions between the two types of CDW structure.

The STM scans are also able to detect defects and domain structure in the CDW image. Several examples will be given demonstrating the potential of the STM to detect these local variations in LDOS on an atomic scale. In contrast to the layer structure crystals the linear chain compound NbSe₃ shows a complex surface atomic structure as well as the formation of two CDWs. The surface atomic structure is resolved in the STM scans and profiles have detected the presence of the CDW modulation at 77K and 4.2K. These results demonstrate the feasibility of detecting CDW structure in the presence of complex atomic structure and using materials where dynamical CDW effects can also be studied by STM.

The range of STM results presented here show that the STM scans are extremely sensitive to the detail of the CDW structure and its effect on the LDOS. Although much of this structure has been deduced from diffraction studies, the ability to examine the CDW structure on an atomic scale with the STM is new. The sensitivity of the STM method suggests potential applications to a wide range of electronic structures in materials.     

Hydrogen-induced instability of the Ge(105) surface

The structure and stability of the hydrogen-terminated (105) surface of Ge deposited on Si(105) substrates are investigated by scanning tunneling microscopy (STM). Investigations combining STM, electron energy loss spectroscopy, and theory reveal that Si incorporation into the surface Ge layer of hydrogen-terminated Ge/Si(105) drastically destabilizes the surface. The STM images obtained on this surface are well explained by the recently established rebonded-step structure model.     

Study of scanning tunneling microscopy images and probable relaxations of the SrTiO3(100) surface by electronic structure calculations

Partial electron density plots were calculated for a model SrTiO₃(100) surface with √5 × √5 ordered oxygen vacancy to examine why the bright spots of the scanning tunneling microscopy (STM) images of SrTiO₃(100) observed in ultrahigh vacuum (UHV) correspond to the oxygen vacancy sites. Possible dependence of the image on the polarity and magnitude of the bias voltage was also discussed on the basis of partial electron density plot calculations. Our study strongly suggests that the UHV STM imaging involves the lowest-lying d-block level of every two Ti³⁺ centers adjacent to an oxygen vacancy, the tip-sample distance involved in the UHV STM experiments is substantially larger than that involved in typical ambient-condition STM imaging, and the Ti⁴⁺ and Ti³⁺ sites of SrTiO₃(100) are reconstructed.     

Preparing and regulating a bi-stable molecular switch by atomic manipulation

We present a scanning tunneling microscopy (STM) investigation into the influence of the STM tip on the adsorption site switching of polychlorinatedbiphenyl (PCB) molecules on the Si(111)-7?×?7 surface at room temperature. From an initially stable adsorption configuration, atomic manipulation by charge injection from the STM tip prepared a new bi-stable configuration that switched between two bonding arrangements. No switching rate bias dependence was found for +?1.0 to +?2.2?V. Assuming a thermally driven switching process we find that the measured energy barriers to switching are influenced by the exact location of the STM tip by more than 10%. We propose that this energy difference is due the dispersion interaction between the tip and the molecule.     

STM investigation of the adsorption and temperature dependent reactions of ethylene on Pt(111)

The adsorption and reactions of ethylene adsorbed in UHV on Pt(111) have been studied as a function of temperature by STM. The STM images taken at 160K show an ordered structure of adsorbed ethylene. Annealing to 300 K produces ethylidyne (C-CH₃) irreversibly, as has been demonstrated by a wide variety of surface science techniques. The ethylidyne on Pt(111) is not visible to the STM at room temperature. Cooling the sample allows direct observation of the ethylidyne ordered structure by STM. Annealing above 430 K results in further dehydrogenation, eventually leaving only carbon on the surface. The decomposition products appear as small clusters which are localized and uniformly distributed over the surface. Further annealing to temperatures >800 K results in the growth of graphite islands on the Pt(111) surface. The annealed graphite islands exhibit several supersturctures with lattice parameters of up to 22 Å, which are thought to result from the higher order commensurability with the Pt(111) substrate at different relative rotations.     

Manipulation of organic “needles” using an STM operated under SEM control

Nano-sized P4P (para-quaterphenylene) organic crystallites grown on a gold substrate were removed and redeposited using the tip of an STM. The controlled lift-off of the needle-shaped crystallites was imaged by a simultaneously operated SEM. The forces exerted by the metal STM tip on the nano-crystal during this nano-manipulation process could be determined by monitoring the deflection of the STM tip. After the lift-off process the former contact area was imaged using the STM. These STM micrographs clearly demonstrate that the region between the needles is covered by a P4P layer with a thickness of at least 3 nm.