Intra- and intermolecular hydrogen bonds in alkyl and silyl ethers: experimental and theoretical analysis

We have investigated the electronic impact of the R protecting group (TBS or PMB) in the conformational equilibrium of alpha-methyl substituted alcohols 1 (R = TBS) and 2 (R = PMB). The conformational analysis and (1)H NMR experiments for alcohols 1 and 2 reflect the tendency for the existence of hydrogen-bonded conformations. The intrinsic low basicity of silyl ethers does not affect the capacity of the oxygen attached to the silicon atom in forming intramolecular hydrogen bonds. We showed that the extents of the hydrogen bonds in silyl and alkyl ethers are determined by several properties, such as orbital interactions, lone pair hybridizations, and lone pair energies, and not just by the electronic occupancy of the donor atom. The populational analysis of NBO allowed understanding the intra- and intermolecular hydrogen bonds between the OH group and oxygen bonded to silicon as well as to alkyl ethers, concluding that there are distinct lone pair contributions.     

Amidation of syndiotactic poly(2-methylallyl hydrogen carboxylate)

The amidation of syndiotactic polyacids and the ¹H- and ¹³C-NMR spectroscopic characterization of the resulting polyamides are described. The polyacids have been derived from syndiotactic poly(2-methylallyl alcohol) by esterification with cyclic dicarboxylic acid anhydrides, including N^α-protected aspartic acid anhydrides and glutamic acid anhydrides. The poly(hydrogen carboxylate) were in turn condensed with a series of amines, some of which possessed additional functional groups, e.g. (L)-1-phenylethylamine, histamine, and glycine methylester.     

Chiral discrimination in lithium complexes of bis(5H-pyrroles) and bis(oxazolines)

The 1:1 and 2:1 complexes of chiral bis(5H-pyrroles) and bis(oxazolines) with the lithium cation have been studied by means of DFT methods (B3LYP/6-31G and B3LYP/6-311+G). The energetic, geometric, electronic, and orbital properties of the complexes have been analyzed. The chiral discrimination in the 2:1 complexes (homo vs heterochiral ones) indicate that in all the cases the heterochiral complexes are more stable than the homochiral ones, except for the tert-butyl derivatives. The chiral discrimination energies will be discussed on the basis of different parameters related to the lithium atom such as the N-Li distance, the orbital interaction between the lone pair of the nitrogen and an empty orbital of the lithium, and its atomic contribution to the total energy of the complexes.     

Matrix-isolation infrared studies of 1:1 molecular complexes containing chloroform (CHCl3) and Lewis bases: seamless transition from blue-shifted to red-shifted hydrogen bonds

The infrared spectra of molecular complexes containing chloroform (CHCl(3)) and Lewis bases (N(2), CO, H(2)O, and CH(3)CN) have been observed in an Ar matrix, and vibrational peaks for the 1:1 complexes have been assigned. The C-H stretching band of chloroform in the complexes showed a seamless transition from a blue shift (for N(2) and CO) to a red shift (H(2)O and CH(3)CN), in accord with the proton affinity of the base molecules. Density functional calculations predicted that the C-H··(σ-type lone pair) isomer is the most stable, which is consistent with the observed vibrational peak shift upon complex formation. The underlying mechanisms of the C-H hydrogen bond were explored using the topological properties of the electronic charge density and natural orbital analyses.     

Density functional study of the sigma and pi bond activation at the Pd=X (X = Sn, Si, C) bonds of the (H2PC2H4PH2)Pd=XH2 complexes. Is the bond cleavage homolytic or heterolytic?

The mechanism for the activation of the sigma bonds, the O-H of H2O, C-H of CH4, and the H-H of H2, and the pi bonds, the C[triple bond]C of C2H2, C=C of C2H4, and the C=O of HCHO, at the Pd=X (X = Sn, Si, C) bonds of the model complexes (H2PC2H4PH2)Pd=XH2 5 has been theoretically investigated using a density functional method (B3LYP). The reaction is significantly affected by the electronic nature of the Pd=X bond, and the mechanism is changed depending on the atom X. The activation of the O-H bond with the lone pair electron is heterolytic at the Pd=X (X = Sn, Si) bonds, while it is homolytic at the Pd=C bond. The C-H and H-H bonds without the lone pair electron are also heterolytically activated at the Pd=X bonds independent of the atom X, where the hydrogen is extracted as a proton by the Pd atom in the case of X = Sn, Si and by the C atom in the case of X=C because the nucleophile is switched between the Pd and X atoms depending on the atom X. In contrast, the pi bond activation of C[triple bond]C and C=C at the Pd=Sn bond proceeds homolytically, and is accompanied by the rotation of the (H2PC2H4PH2)Pd group around the Pd-Sn axis to successfully complete the reaction by both the electron donation from the pi orbital to Sn p orbital and the back-donation from the Pd dpi orbital to the pi orbital. On the other hand, the activation of the C=O pi bond with the lone pair electron at the Pd=Sn bond has two reaction pathways: one is homolytic with the rotation of the (H2PC2H4PH2)Pd group and the other is heterolytic without the rotation. The role of the ligands controlling the activation mechanism, which is heterolytic or homolytic, is discussed.     

Stereoregularity of radically polymerized poly(alkyl acrylates) and poly(trimethylsilyl acrylates) and the preparation of syndiotactic poly(methyl acrylate)

Nuclear magnetic resonance (NMR) spectroscopy was used to determine the stereoregularity of radically polymerized poly(ethyl acrylates), poly(trimethylsilyl acrylates), and poly(isopropyl acrylate-α,β-d₂). The ethyl acrylate polymers consisted of a random configuration having about 50% of isotactic diads, and their stereoregularities were independent of the polymerization temperature (40 to ?78°C). Poly(trimethylsilyl acrylates) and poly(isopropyl acrylate-α,β-d₂) prepared at low temperatures had a syndiotactic configuration. Syndiotactic poly(methyl acrylate) was derived from syndiotactic poly(trimethylsilyl acrylate). For poly(methyl acrylate), an approximate estimation of the stereoregularity by infrared spectroscopy was proposed.     

CH3SH…HOO开壳型氢键复合物的结构及其电子密度拓扑性质

在DFT-B3LYP/6-311++G**水平下求得CH3SH…HOO复合物势能面上的稳定构型. 计算结果表明, 在HOO以其O8—H7作为质子供体与CH3SH分子中的S5原子为质子受体形成的氢键复合物1和2中, O8—H7明显被“拉长”, 且其伸缩振动频率发生显著的红移, 红移值分别为330.1和320.4 cm-1; 在CH3SH分子以其S5—H6作为质子供体与HOO的端基O9原子为质子受体形成的氢键复合物3和4中, 也存在类似的情况, 但S5—H6伸缩振动频率红移不大. 经MP2/6-311++G**水平计算的4种复合物含BSSE校正的相互作用能分别为-20.81, -20.10, -4.46和-4.52 kJ/mol. 自然键轨道理论(NBO)分析表明, 在CH3SH…HOO复合物1和2中, 引起H7—O8键长增加的因素包括两种电荷转移, 即孤对电子n1(S5)→σ*(H7—O8)和孤对电子n2(S5)→σ*(H7—O8), 其中后者为主要作用. 在复合物3和4中也有相似的电荷转移情况, 但轨道间的相互作用要弱一些. AIM理论分析结果表明, 4个复合物中的S5…H7间和O9…H6间都存在键鞍点, 且其Laplacian量▽2ρ(r)都是很小的正值, 说明这种相互作用介于共价键和离子键之间, 偏静电作用为主.     

The synthesis of poly(acrylic acid hydrazide) and poly(methylacrylic acid hydrazide) and their reaction products with ribonucleoside dialdehydes

Atactic and syndiotactic poly(acrylic acid hydrazide) and atactic, syndiotactic and isotactic poly(methylacrylic acid hydrazide) have been reacted with the di-aldehydes derived from adenosine, guanosine, inosine, cytidine and uridine to give polymers each containing a single type of base residue. Not all of the hydrazide residues of the polymeric hydrazides reacted; guanosine dialdehyde gave the most reaction and inosine dialdehyde the least. Isotactic poly(methylacrylic acid hydrazide) was much less reactive than the other polymeric hydrazides. The adenine-containing and the cytosine-containing polymers with atactic backbones had a low solubility in water whereas those with syndiotactic backbones had a relatively high solubility. For a given polymeric hydrazide backbone the adenine-containing polymers were always the least soluble in water. Most of the ribonucleoside dialdehyde-containing polymers, with the exception of those containing uridine dialdehyde, had only a low solubility in salt solution (0.3M sodium chloride, 0.03M trisodium citrate). No evidence could be obtained for any interaction of these polymers with polynucleotides.     

CpRu(PPh3)2SSiiPr3与SCNR(R=Ph,1-Naphthyl)反应的结构、成键与机理的理论研究

应用密度泛函理论(DFT), 通过CpRu(PH₃)₂SSiⁱPr₃ (Cp＝环戊二烯负离子; ⁱPr＝异丙基)与SCNH模型化反应, 探讨了CpRu(PPh₃)₂SSiⁱPr₃ 与SCNR (R＝苯基, 萘基)的反应机理, 分析了反应所涉及的各相关化合物的结构与成键特征. 反应中首先失去一个膦配体, 生成一个中间体. 该中间体中, 硫原子采取sp²杂化, 硫原子剩余的一个p轨道与金属中心上的d轨道具有相同的对称性, 因而该p轨道上的孤电子对可与金属中心上的d轨道形成π键, 导致Cp环中心, Ru, S1, P和Si原子在同一平面内, 而不是S1, P和Si原子偏离该平面. 计算结果预测, S＝C双键中的p键打开, 生成含金属中心的四元环螯合物一步为反应的决速步骤. 空间位阻的减小、p共轭体系的生成以及螯合环的存在, 是导致该反应热力学有利的重要原因.     

Trans-hydrogen-bond (h2)J(NN) and (h1)J(NH) couplings in the DNA A-T base pair: natural bond orbital analysis

Natural bond orbital (NBO) analysis described here demonstrates that trans-hydrogen-bond (trans-H-bond) NMR J couplings in the DNA A-T base pair, h2JNN and h1JNH, are determined largely by three terms: two Lewis-type contributions (the single-orbital contribution from the adenine lone pair and the contribution from the sigmaN3H3 natural bond orbital of the thymine ring) and one contribution from pairwise delocalization of spin density (between the lone pair in adenine and the sigma* antibonding orbital linking N3 and H3 of thymine). For h2JNN coupling, all three contributions are positive, whereas for h1JNH coupling, the delocalization term is negative, and the other two terms are positive, resulting in a small net positive coupling constant. This result rationalizes the experimental findings that the two-bond coupling (h2JNN approximately 9 Hz) is larger than the one-bond coupling (h1JNH approximately 3 Hz) and demonstrates that the same hyperconjugative and steric mechanisms that stabilize the H-bond are involved in the transmission of J coupling information. The N1...H3-N3 H-bond of the DNA A-T base pair is found to exhibit significant covalent character, but steric effects contribute almost equally to the trans-H-bond coupling.     

Thermal and dynamic mechanical relaxation behavior of stereoregular poly(2-hydroxyethyl methacrylate)

Thermal, dynamic mechanical, and dielectric relaxation techniques were used to determine the relaxation behavior of isotactic and syndiotactic poly(2-hydroxyethyl methacrylate) (pHEMA). Activation energies E_a were determined for the dielectric γ relaxation and compared with those of poly(2-methoxyethyl methacrylate) (pMEMA) to determine the influence of hydrogen bonding on side-chain relaxation processes. No difference in E_a was observed between syndiotactic pHEMA and atactic (predominantly syndiotactic) pMEMA. Isotactic pHEMA, however, had E_a + 1 kcal/mole higher than that of syndiotactic pHEMA. This was attributed to improved side-chain packing in the isotactic polymer.     

Degradation of vinylidene chloride/phenylacetylene (VDC/PA) copolymers. Effect of internal unsaturation on poly(vinylidene chloride) stability

The thermal degradation of vinylidene chloride/phenylacetylene copolymers containing small but varying amounts of phenylacetylene has been examined in both the solid phase and in bibenzyl solution. Incorporation of phenylacetylene into the poly(vinylidene chloride) structure greatly facilitates degradative dehydrochlorination. Indeed, the presence of phenylacetylene promotes the formation of polyene segments during the polymerization process so that all the copolymers, even at very low phenylacetylene loading, are tan in color. The decreased stability of polymers containing interal unsaturation arises from an increased rate of initiation for degradative dehydrochlorination. The propagation rate is largely unaffected by the level of unsaturation initially present in the polymer. The ratio of hydrogen chloride to stilbene formed for degradation of these copolymers in bibenzyl solution is approximately 35:1. This suggests that the chlorine atom of the initially-formed radical pair preferentially abstracts an adjacent hydrogen atom rather than interacting with solvent, i.e., the chain-carrying radical pair does not dissociate appreciably as the unzipping dehydrochlorination occurs. Thus random double bonds introduced in a variety of ways may be identified as principal defect sites responsible for the initiation of the degradative dehydrochlorination of poly(vinylidene chloride). Species which promote the degradation of poly(vinylidene chloride) probably do so by facilitating the introduction of random double bonds into the structure.     

System constants for the bis(cyanopropylsiloxane)-co-methylsilarylene HP-88 and poly(siloxane) Rtx-440 stationary phases

The solvation parameter model is used to characterize the retention properties of the bis(cyanopropylsiloxane)-co-methylsilarylene, HP-88, and poly(siloxane), Rtx-440, stationary phases over the temperature range 60-140 degrees C. HP-88 is among the most cohesive, dipolar/polarizable and hydrogen-bond basic of stationary phases for open-tubular column gas chromatography. It has no hydrogen-bond acidity or capacity for electron lone pair interactions. It exhibits similar selectivity to the poly(cyanopropylsiloxane) stationary phase SP-2340. Rtx-440 is a low-polarity, low-cohesion stationary phase with a moderate capacity for dipolar/polarizable and hydrogen-bond base interactions. It has no hydrogen-bond acidity and possesses weak electron lone pair interactions. It has unique selectivity when compared against a system constants database for 28 common stationary phase compositions. Cluster analysis indicated that the poly(cyanopropylphenyldimethylsiloxane) stationary phase containing 6% cyanopropylphenylsiloxane monomer, DB-1301, the poly(dimethyldiphenylsiloxane) stationary phase containing 20% diphenylsiloxane monomer, Rtx-20, the poly(siloxane) stationary phase of unknown composition, DB-624, and DX-1 [a mixture of poly(dimethylsiloxane) and poly(ethylene glycol) 9:1] are the closest selectivity matches in the database. The selectivity of DB-1301 and Rtx-440 are very similar for solutes with weak hydrogen-bond acidity allowing one stationary phase to be substituted for the other with likely success. For strong hydrogen-bond acids, such as phenols, DB-1301 and Rtx-440 exhibit different selectivity.     

Stereoelectronic Effects on the Nucleophilic Addition of Phosphite to the Carbonyl Double Bond: Ab Initio Molecular Orbital Calculations on Reaction Surfaces and the α-Effect

Ah initio molecular orbital calculations have been carried out on adducts of trihydroxy phosphine, P(OH)₃, and formaldehyde, H₂C=0. Stationary points were located and a reaction surface calculated. One stationary point exists as a stable pentacovalent phosphorane, and the other as a 1,3-dipolar transition state. Calculations differing in the conformation about the P-OH bonds of the phosphite reveal that an antiperiplanar (app) lone pair on oxygen to the phosphorus lone pair (acyclic analogue) raises the energy of the molecule by 1.7 kcal/mol relative to a phosphite conformation with no app lone pairs to the phosphorus lone pair (bicyclic analogue). In the transition state, the relative energy between the two conformations reverses with the acyclic analogue transition state 5 kcal/mol lower energy than the bicyclic analogue transition states. The lower energy for the acyclic analogue in the transition state is attributed to the mixing of the app lone pairs on the oxygens of the phosphite mixing with the σ orbital of the newly formed bond between phosphorus and carbon. This kinetic Stereoelectronic effect can explain why acyclic phosphites react much faster in nucleophilic reactions than bicyclic phosphites. This phenomenon suggests that the origin of the α-effect, the enhanced nucleophilicity of a base possessing a heteroatom with an adjacent unshared electron pair arises from the stereoelectronic effect.     

次级键与晶体中锑(III)螯合物配位多面体研究

考虑立体活性孤对电子附近次级键配位原子的贡献, 对文献报道的三十个氨基多羧酸锑(III)螯合物的晶体结构中配位多面体描述进行了全面的修正. 配位多面体的几何构型指定采用了单位球内截多面体的两面角判据及其相关的ANVPDA程序. 所有配位多面体几何构型的修正均得到了键价计算的有力支持.     

次级键与晶体中锑(III)螯合物配位多面体研究

考虑立体活性孤对电子附近次级键配位原子的贡献,对文献报道的三十个氨基多羧酸锑(III)螯合物的晶体结构中配位多面体描述进行了全面的修正.配位多面体的几何构型指定采用了单位球内截多面体的两面角判据及其相关的ANVPDA程序.所有配位多面体几何构型的修正均得到了键价计算的有力支持.     

Stereoregularity of poly(isopropyl acrylate) and its racemization during hydrolysis

The diad tacticity of poly(isopropyl acrylate) was measured from the β-proton absorptions of poly(isopropyl acrylate-α,β-d₂) obtained with a 100 MHz NMR spectrometer, and temperature dependence of the tacticity of the polymers obtained by radical polymerization was determined. Enthalpy and entropy differences between isotactic and syndiotactic addition for poly(isopropyl acrylate) were calculated to give the following values: Δ(ΔS) = 0.7 eu; Δ(ΔH) = 0.51 kcal/mole. In the hydrolysis of poly(isopropyl acrylate-α,β-d₂), it was found that the rate of hydrolysis of poly(isopropyl acrylate) was dependent on the molecular weight rather than on the tacticity. As for the rate of racemization during hydrolysis, the rate for syndiotactic polymer was much faster than that for the isotactic polymer. The exchange reaction of deuterium at α-position with hydrogen occurred in all the polymers during hydrolysis reaction.     

Stereoregularity of poly(methyl acrylate)

The stereoregularity of poly(methyl acrylate) and poly(methyl acrylate-αd) was determined from the NMR spectra. A method of quantitative determination of stereoregularity of poly(methyl acrylate) proposed in this paper is based on the fact that in the 100 Mc./sec. NMR spectrum the absorption peaks due to methylene protons in syndiotactic configurations overlap absorptions due to only one of two methylene protons in isotactic configurations. The stereostructure of poly(methy1 acrylates) polymerized with anionic catalysts such as Grignard reagents, n-butyllithium, and LiAlH₄ is generally richer in isotactic diads than in syndiotactic diads. For example, poly(methyl acrylate) polymerized with phenylmagnesium bromide as catalyst at ?20°C. consists of 99% isotactic and 1% syndiotactic diads. In radical polymerization, the isotacticity of poly(methyl acrylate) is independent of polymerization temperature. Poly(methyl acrylates) polymerized with a Ziegler-Natta catalyst consisting of Al(C₂H₅)₂Cl and VCl₄ have configurations similar to those polymerized by radical initiators. The stereoregularity of poly(methyl acrylate-α-d) resembled that of poly(methyl acrylate) polymerized under the same conditions.     

Theoretical Investigation on the Geometries and Properties of Guanine-BX3 （X = F, Cl） Complex

Geometries and binding energies were predicted at the B3LYP/6-311+G* level for the guanine-BX3 (X = F, Cl) systems and four isomers with no imaginary frequencies have been obtained for both guanine-BF3 and guanine-BCl3, respectively. Single energy calculations using much larger basis sets (6-311+G(2df,p) and aug-cc-pVDZ were carried out as well. It was found that the most stable isomer of guanine-BF3 is BF3 connected to N3 of guanine with the stabilization energy of –19.93 kcal/mol (BSSE corrected), while that of guanine-BCl3 is BCl3 connected to O10 of guanine having stabilization energy of –15.02 kcal/mol at the same level. The analyses for the combining interaction between BX3 and guanine with the atom-in-molecules theory (AIM) and natural bond orbital (NBO) methods have been performed. The results indicated that all the isomers are formed with σ-p type interactions between guanine and BX3, in which pyridine-type nitrogen or carbonyl oxygen or nitrogen atom of amino group offers its lone pair electrons to the empty p orbital of boron atom and the concomitance of charge transfer from guanine to BX3 has occurred. Still, one or two hydrogen bonds exist in some isomers of guanine-BX3 system and contribute to the stability of complex systems. Frequency analysis suggested that the stretching vibration of BX3 undergoes a red shift in complexes. Guanine-BF3 complex is more stable than guanine-BCl3 although the B–Y (Y=N, O) bond distance in the latter is shorter.     

Preparation and (13C)NMR spectroscopy of stereoregular poly(methacrylic acid)

Several procedures for synthesis of stereoregular poly(methacrylic acid) have been examined and the polymer characterized by (¹³C)NMR. Using d⁶ DMSO as solvent for spectroscopy gives better spectra than those previously obtained using aqueous solutions and stereochemical splittings can be resolved in the methyl signals. Free-radical polymerization in toluene solution is a Bernouilli process giving mainly heterotactic/syndiotactic polymer. Polymers produced with free-radical initiation in aqueous solution have a higher, and pH dependent, content of syndiotactic triads. A previously described procedure for producing regular polymers by hydrolysis of poly(trimethylsilyl methacrylate) requires modification to produce isotactic contents of above 90% and does not give truly syndiotactic polymer. In contrast, polymerization with γ-radiation can produce polymers with close to 90% of syndiotactic triads.