Cyanine dyes as protectors of K562 cells from photosensitized cell damage

Several cyanine dyes were found to protect K562 leukemia cells against toxicity mediated by cis-di(4-sulfonatophenyl)diphenylporphine (TPPS2) and light. Most cyanine dyes derived from dimethylindole were better photoprotectors than cyanine dyes with other structures. This correlated with the fact that cyanine dyes derived from dimethylindole were predominately monomeric at millimolar concentrations within K562 cells, while other cyanine dyes formed aggregates. For cyanine dyes that are derived from dimethylindole and have absorption band wavelengths greater than 700 nm, fluorescence-energy transfer from TPPS2 to the cyanine dye was the most important mechanism for photoprotection. There was no spectroscopic evidence for complex formation between the cyanine dyes and TPPS2. The dimethylindole derivative, 1,1',3,3,3',3'-hexamethylindodicarbocyanine, was an excellent photoprotector, but a poor quencher of TPPS2 fluorescence and a relatively poor singlet-oxygen quencher. This cyanine dye may act by quenching excited triplet TPPS2. Singlet-oxygen quenching may contribute to the photoprotection provided by cyanine dyes not derived from dimethylindole. Differences in the subcellular distribution of the various cyanine dyes studied may have contributed to the different apparent mechanisms of photoprotection.     

Synthesis of cyanine dyes derived from benzotellurazo‐15‐crown‐5

A series of crown ether cyanine dyes including crown ether styryl cyanine dyes, crown ether merocyanine dyes and crown ether squarylium cyanine dyes (unsymmetric and symmetric) derived from key intermediate 2‐methyl‐5,6(15‐crown‐5)benzotellurazole ( 1 ) were prepared.     

Combination of Cyanine Behaviour and Giant Hyperpolarisability in Novel Merocyanine Dyes: Beyond the Bond Length Alternation (BLA) Paradigm

Merocyanine dyes that exhibit antithetic cyanine‐like behaviour and giant first‐order hyperpolarisability (β) values have been designed. These cyanine‐type dyes open up an intriguing route towards molecular‐based electro‐optic materials as well as new second‐harmonic generation dyes for imaging.     

Adsorption of cyanine dyes on gold nanoparticles and formation of J-aggregates in the nanoparticle assembly

This paper describes the results of an investigation of the interparticle interactions and reactivities in the assembly of gold nanoparticles mediated by cyanine dyes. The combination of the positively charged indolenine cyanine dyes and the negatively charged gold nanoparticles is shown to form a J-aggregate bridged assembly of nanoparticles, in addition to hydrophobic interparticle and electrostatic dye-particle interactions. Such interparticle interactions and reactivities are studied by probing the absorption of J-aggregates and fluorescence from the dyes and the surface plasmon resonance absorption from the nanoparticles. The J-aggregation of the dyes adsorbed on the nanoparticles is shown to play an important role in the assembly of nanoparticles. The spectral evolution of the J-band of the dyes and the surface plasmon resonance band of the nanoparticles was found to be sensitive to the nature of the charge and the structure of the dyes. The fluorescence quenching for the dyes was shown to be quantitatively related to the surface coverage of the dyes on the nanocrystal surfaces. These findings have provided important information for assessing a two-step process involving a rapid adsorption of the dyes on the nanoparticles and a subsequent assembly of the nanoparticles involving a combination of interparticle J-aggregation and hydrophobic interactions of the adsorbed dyes. The results are discussed in terms of the structural effects of the dyes, and the interparticle molecular interactions and reactivities, which provide important physical and chemical insights into the design of dye-nanoparticle structured functional nanomaterials.     

Spiro-Azoles Thiazolidinone in the Synthesis of Polymethine Cyanine Dyes

A series of some spiro azoles (pyrazolone, oxazolone, and/or imidazolone) inconjucton with heterocyclic thiazolidinone derivatives were prepared as starting materials in the synthesis of polymethine cyanine dyes. Reaction of spiro 2-formyl (oxime) azoles thiazolidinone derivatives with equi- and/or molar ratios of 2(4)-methyl substituted heterocyclic quaternary salts afforded the corresponding compound pentamethine, aza-mero cyanine, and azapentamethine cyanine dyes respectively. Elemental analyses, IR, 1 H-NMR, and mass-spectra identified the new spiro heterocyclic compounds and polymethine cyanine dyes. The visible absorption spectra of all new polymethine cyanine dyes were investigated.     

Viscosity dependent radiationless relaxation rate of cyanine dyes. A picosecond laser spectroscopy study

The viscosity dependent radiationless relaxation of several cyanine dyes has been studied by picosecond laser spectroscopy. It was found that the relaxation rate is proportional to η^?α. The value of α, however, is not constant for a certain dye molecule, but is strongly dependent on the kind of solvent used. In n-alcohols for instance α is typically about 1. In glycerol/methanol or glycerol/water mixtures on the other hand α ≈ 0.5. A comparison is made with literature data on orientational relaxation lifetimes of some dyes in similar solvents. It is shown that the radiationless relaxation of cyanine dyes and the orientational relaxation of for instance xanthene dyes changes in roughly the same way as the solvent is changed. This is taken as proof of the proposal that a torsional motion of the heterocyclic quinolyl rings is the main course of the viscosity dependent relaxation of the cyanine dyes studied.     

Studies of 2‐Azaazulenium Derivatives: Unsymmetrical Trimethine Cyanine Dyes Bearing a 2‐Azaazulenium Moiety as One of the Terminal Groups

We report here the synthesis of a series of symmetrical and unsymmetrical trimethine cyanine dyes derived from 2‐azaazulene, combined spectral and quantum‐chemical investigations of their molecular geometry and electron structure, as well as the nature of the lowest electron transitions. Based on the analysis of both calculations and experimental data obtained from absorption and ¹³C NMR spectra, it was concluded that the 2‐azaazulene residue can be treated as a weakly basic terminal group; its donor properties are provided with the participation of the HOMO?1, in contrast to the typical Brooker’s terminal residues with their donor HOMOs. The new classification of the terminal groups of cyanine dyes, and hence the classification of types of unsymmetrical cyanines, is proposed. It is shown that the nature of the higher electron transitions (delocalized or local) in the cyanine dyes depends on their type. In the unsymmetrical trimethine cyanine of the mixed type, negative deviations are observed in their absorption spectra.     

Key Structural Elements of Unsymmetrical Cyanine Dyes for Highly Sensitive Fluorescence Turn‐On DNA Probes

Unsymmetrical cyanine dyes, such as thiazole orange, are useful for the detection of nucleic acids with fluorescence because they dramatically enhance the fluorescence upon binding to nucleic acids. Herein, we synthesized a series of unsymmetrical cyanine dyes and evaluated their fluorescence properties. A systematic structure–property relationship study has revealed that the dialkylamino group at the 2‐position of quinoline in a series of unsymmetrical cyanine dyes plays a critical role in the fluorescence enhancement. Four newly designed unsymmetrical cyanine dyes showed negligible intrinsic fluorescence in the free state and strong fluorescence upon binding to double‐stranded DNA (dsDNA) with a quantum yield of 0.53 to 0.90, which is 2 to 3 times higher than previous unsymmetrical cyanine dyes. A detailed analysis of the fluorescence lifetime revealed that the dialkylamino group at the 2‐position of quinoline suppressed nonradiative decay in favor of increased fluorescence quantum yield. Moreover, these newly developed dyes were able to stain the nucleus specifically in fixed HeLa cells examined by using a confocal laser‐scanning microscope.     

New Polyfluorinated Cyanine Dyes for Selective NIR Staining of Mitochondria

In this communication, the synthesis of three unknown polyfluorinated cyanine dyes and their application as selective markers for mitochondria are presented. By incorporating fluorous side chains into cyanine dyes, their remarkable photophysical properties were enhanced. To investigate their biological application, several different cell lines were incubated with the synthesized cyanine dyes. It was discovered that the presented dyes can be utilized for selective near-infrared-light (NIR) staining of mitochondria, with very low cytotoxicity determined by MTT assay. This is the first time that polyfluorinated cyanine fluorophores are presented as selective markers for mitochondria. Due to the versatile applications of polyfluorinated fluorophores in bioimaging and materials science, it is expected that the presented fluorophores will be stimulating for the scientific community.     

Novel Cyanine Dyes: Synthesis,Characterization and Photosensitization‐Structure Correlation

Novel furo, thieno and pyrrolo[2,3‐b]pyrazole cyanine dyes were synthesized. The structure‐photosensitization properties correlation of the dyes were examined in 95% ethanol solution by absorption spectroscopy. The chemical structure of the starting biheterocyclic compounds and their derived cyanine dyes were confirmed by elemental analysis, IR and ¹H NMR spectroscopy.     

Photophysical properties of fluorescent DNA-dyes bound to single- and double-stranded DNA in aqueous buffered solution.

The absorption and fluorescence spectra, fluorescence quantum yields, lifetimes and time-resolved fluorescence spectra are reported for nine different fluorescent DNA-dyes. The work was initiated in search of a quantitative method to detect the ratio of single-to-double stranded DNA (ssDNA/dsDNA) in solution based on the photophysics of dye-DNA complexes; the result is a comprehensive study providing a vast amount of information for users of DNA strains. The dyes examined were the bisbenzimide or indole-derived stains (Hoechst 33342, Hoechst 33258 and 4',6-diamidino-2-phenylindole), phenanthridinium stains (ethidium bromide and propidium iodide) and cyanine dyes (PicoGreen, YOYO-1 iodide, SYBR Green I and SYBR Gold). All were evaluated under the same experimental conditions in terms of ionic strength, pH and dye-DNA ratio. Among the photophysical properties evaluated only fluorescence lifetimes for the cyanine stilbene dyes allowed a convenient differentiation between ssDNA and dsDNA. The bisbenzimide dyes showed multiexponential decays when bound to either form of DNA, making lifetime-based analysis cumbersome with inherent errors. These dyes also presented biexponential decay when free in aqueous buffered solutions at different pH. A mechanism for their deactivation is proposed based on two different conformers decaying with different kinetics. The phenanthridinium dyes showed monoexponential decays with ssDNA and dsDNA, but there was no discrimination between them. High dye-DNA ratios (e.g. 1:1) resulted in multiexponential decays for cyanine dyes, resulting from energy transfer or self-quenching deactivation. Shifts in both absorption and fluorescence maxima for both ssDNA and dsDNA DNA-cyanine dye complexes were small. Broadening of dye-ssDNA absorption and fluorescence bands for the cyanine dyes relative to dye-dsDNA bands was detected and attributed to higher degrees of rotational freedom in the former.     

Specific search for heterocycles for cyanine dyes by means of a computer

A method for the selection by means of a computer of terminal heterocyclic groups for cyanine dyes that absorb over a predesignated spectral range is described. New monoazaheterocycles, the introduction of which into the compositions of cyanine dyes as terminal groups should ensure absorption in the near-IR region of the spectrum, are presented as examples.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 2, pp. 217–222, February, 1984.     

含叔丁基吡喃翁方酸菁染料的合成及溶解性能研究

合成了四个对称及不对称含叔丁基吡喃翁方酸的菁染料,通过光谱和元素分析确定其结构,测定了它们的紫外-可见吸收光谱、熔点和溶解性能。结果表明吡喃翁方酸菁染料比一般菁染料具有更长的吸收波长和更好的溶解性能。用Dye2的单晶分子堆积图解释了染料的熔点反常现象。     

菁染料分子中取代基效应的交替现象

本文利用同系线性规律对菁染料的取代基效应进行了研究.提出菁染料的取代基效应与通常的取代基效应不同,在菁染料分子中取代基效应存在较大的交替现象;根据取代基团的内部结构及其所在位置的关系,推导出一套经验公式,并对菁染料的电子吸收光谱进行了定量计算.本文定量地预测了由苯并硫氮茂环、萘并琉氮茂环和苯并硒氮茂环等组成的菁染料及其衍生物(共一百多个化合物)的电子吸收光谱峰值,与实验值相比,峰值偏离在±5nm内的约占70%左右,在±5-±10nm的约占25%,大于±10nm的约占5%.     

菁染料和份菁染料溶液的光降解机理的研究

利用UV-Vis吸收光谱仪和光化学反应器,研究了菁染料和份菁染料溶液的光降解动力学,认为染料在乙腈溶液中的光褪色反应服从假一级或零级动力学.利用GC/MS光谱仪检测了染料的光降解产物.与相应的份菁染料相比,携带正电荷的菁染料具有相对较好的光稳定性.研究结果表明,菁染料光降解反应的中间体可能是染料的半氧化态Dye⁺,并利用纳秒级闪光光解技术研究了Dye⁺的瞬态吸收光谱.     

含叔丁基吡喃鎓方酸菁染料的合成及溶解性能研究

合成了四个对称及不对称含叔丁基吡喃鎓方酸的菁染料,通过光谱和元素分析确定其结构,测定了它们的紫外-可见吸收光谱、熔点和溶解性能。结果表明吡喃鎓方酸菁染料比一般菁染料具有更长的吸收波长和更好的溶解性能。用Dye2的单晶分子堆积图解释了染料的熔点反常现象。     

On the nature of excited electronic states in cyanine dyes: implications for visual pigment spectra

CNDO/S CI calculations are carried out on polyenes and on cyanine dyes. In contrast to polyenes, doubly excited configurations have a strong effect on the first optically allowed excited state in cyanines. Protonated Schiff bases of retinal are closely related to cyanine dyes, with important consequences for models of visual pigment spectra and photochemistry.     

菁染料和份菁染料的合成及其溶液的光稳定性研究

利用UV-Vis吸收光谱仪和光化学反应器,研究了菁染料和份菁染料的光降解动力学.研究结果表明,染料在乙腈溶液中的光褪色反应遵循假一级或零级动力学衰减.与相应的份菁染料相比,携带正电荷的菁染料具有相对较好的光稳定性.     

Long chain heterocyclic dyes. Part Two. Surface active dyes

A series of heterocyclic cyanine dyes were prepared. Unsymmetrical dyes showed self-micellizing properties due to the presence of two positive charges and of a long alkyl chain. Symmetrical dyes, containing three positive charges and not containing the hydrophobic chain, did not give rise to micelles. The physical properties of the dyes and their spectra were briefly discussed. Cationic (HTAB) and anionic (SDS) surfactants gave strong interactions with surface active dyes, leading to deaggregation and solvation phenomena.     

Supra-Cyanines: Ultrabright Cyanine-Based Fluorescent Supramolecular Materials in Solution and in the Solid State

Fluorescent materials with high brightness play a crucial role in the advancement of various technologies such as bioimaging, photonics, and OLEDs. While significant efforts are dedicated to designing new organic dyes with improved performance, enhancing the brightness of existing dyes holds equal importance. In this study, we present a simple supramolecular strategy to develop ultrabright cyanine-based fluorescent materials by addressing long-standing challenges associated with cyanine dyes, including undesired cis-trans photoisomerization and aggregation-caused quenching. Supra-cyanines are obtained by incorporating cyanine moieties in a cyclic peptide-based supramolecular scaffold, and exhibit high fluorescence quantum yields (up to 50 %) in both solution and in the solid state. These findings offer a versatile approach for constructing highly emissive cyanine-based supramolecular materials.