Phosphorus heterocycles: synthesis,spectroscopic study and X-ray crystallography of some new diazaphosphorinanes

New diazaphosphorinanes with formula R=C₆H₅O (2), 4-CH₃-C₆H₄NH (3), 4-NO₂-C₆H₄NH (4), R=Cl (5), 4-CH₃-C₆H₄O (6), and C₆H₅NH (7) were synthesized and characterized by ¹H, ¹³C, ³¹P NMR and IR spectroscopy and elemental analysis. The crystal structures of compounds 1 and (8) were determined using X-ray crystallography. In these structures, the P=O bond is placed in an equatorial position and the aliphatic six-membered rings show chair conformations. These compounds form two-dimensional polymeric chains via intermolecular P=O…H–N hydrogen bonds. ¹H NMR spectrum of compound 1 shows a ddd splitting pattern for the coupling of H_equatorial proton with phosphorus atom, H_axial atom, and NH proton with a high-value ³ J(PNCH) coupling constant = 26.1 Hz. But, H_axial indicates a dd splitting pattern because of the coupling with H_equatorial and NH protons. ¹³C NMR spectra of compounds 5–7, indicated high values for ³ J(P,C)_aromatic = 11.9, 11.3 and 10.2 Hz due to the coupling of the aromatic carbon atom of naphthalene moiety with the phosphorus atom. ³¹P NMR spectra indicate that the δ(³¹P) of compounds 1–4 and 8 containing NH groups connected to the aliphatic carbon atoms appear downfield relative to those of compounds 5–7 that containing NH groups connected to the aromatic naphthalene group.

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Graphical abstract

     

Structural diversity in phosphoramidate’s chemistry: Syntheses,spectroscopic and X-ray crystallography studies

Novel phosphorus compounds of bisphosphoramidate, phosphoramidate and phosphoric triamide derivatives were synthesized using the starting materials PCl₅ and POCl₃. The products were then characterized by ¹H, ¹³C, ³¹P, ¹⁹F NMR, IR spectroscopy and CHN elemental analysis. It is noticeable that the reaction of 4-aminobenzamide with PCl₅ in different molar ratios yields different products, bisphosphoramides and phosphoric triamides. Moreover, we were taken by surprise that the interaction of POCl₃ with the first-type aromatic amines gave bisphosphoramidates with P–N–P linkages that exhibited ²J(P,P) ≈ 20.0 Hz in the ³¹P NMR spectra. In fact, two simple one-pot pathways are presented here for the synthesis of new bisphosphoramidates, and to the best of our knowledge these are the first instances of bisphosphoramidates that have been obtained up until now. The structures of compounds I (4-OCH₃–C₆H₄–CH₂–C₉H₁₃–NH₂Cl), 34 and 44 were further determined by X-ray crystallography. All of these structures produced three dimensional polymeric chains through strong- and weak hydrogen bonds. The presence of chiral aminoacidester moieties in the phosphoric triamides lead to chiral molecules that showed two sets of signals for the two groups. Interestingly, in phosphoric triamides containing cyanoacetamide moieties, the existence of aromatic amine substituents on the P atoms created central chiral phosphorus atoms, i.e. the two aromatic groups revealed two sets of peaks in the ¹H and ¹³C NMR spectra, while compounds with aliphatic moieties did not display this effect.     

Syntheses,spectroscopic study and crystal structures of some new <Emphasis Type="Italic">N</Emphasis>-benzoylphosphoric triamides

The reaction of N-benzoylphosphoramidic dichloride with amines afforded some new N-benzoylphos-phoric triamides with formula C₆H₅C(O)NHP(O)(X)₂, X=NH–CH(CH₃)₂ (1), NH–CH₂–CH(CH₃)₂ (2), NH–CH₂–CH(OCH₃)₂ (3), N(CH₃)[CH₂CH(OCH₃)₂] (4) and N(CH₃)(C₆H₁₁) (5) that were characterized by ¹H,¹³C,³¹P NMR, IR spectroscopy and elemental analysis. The structures have been determined for compounds 4 and 5 by X-ray crystallography. These compounds contain one amidic hydrogen atom and form centrosymmetric dimmers via intermolecular –P–O⋯H–N–hydrogen bonds besides weak C–H⋯O hydrogen bonds that lead to three-dimensional polymeric clusters in the crystalline lattice.     

Two conformers in the solid state for a novel organotin(IV) complex of a phosphoramidate: Syntheses, spectroscopic study and crystal structures of several new organotin(IV) complexes of N-benzoylphosphoric triamides

Several novel organotin(IV) complexes with formula SnCl₂(CH₃)₂(X)₂, X = C₆H₅C(O)NHP(O)(NC₄H₈)₂ (1), C₆H₅C(O)NHP(O)(NC₅H₁₀)₂ (2), C₆H₅C(O)NHP(O)[N(CH₃)(C₆H₁₁)]₂ (3), C₆H₅C(O)NHP(O)[NH-C(CH₃)₃]₂ (4) were synthesized and characterized by ¹H, ¹³C, ³¹P NMR, IR spectroscopy and elemental analysis. The structures have been determined for each of the four compounds. Compound 1 exists in the form of two symmetrically independent molecules in the crystalline state due to differences in their similar torsion angles. In all of the four structures there are intramolecular -Sn-Cl?H-N- hydrogen bonds, in addition to weak C-H?O and C-H?Cl hydrogen bonds. Both ¹H and ¹³C NMR spectra show the coupling of ^119/117Sn nuclei with methyl proton and carbon atoms. The δ(³¹P) of these complexes are in upfields with respect to their corresponding reported ligands. The spectroscopic and structural properties of these complexes were compared with those corresponding ligands.     

Complexation,crystallography, and electrochemistry of new chelating nicotinyl and thiazolyl anthraquinone ligands

Chelating anthraquinone ligands that contain nicotinyl and thiazolyl binding units have been synthesized. The complexation chemistry of these new ligands has also been explored using cadmium(II), lead(II), and ruthenium(II). The nicotinic substituted anthraquinone acts as a bidentate ligand, while the thiazolyl substituted anthraquinone binds in a tetradentate arrangement, not previously observed. Due to steric limitations, the number of these ligands that can coordinate to metal centers appears limited to bis-substituted products. Crystallographic data for both the free ligands and the cadmium and lead complexes are reported. Electrochemical data indicate that interaction does not take place between the intraannular carbonyl group and the neighboring metal centers within these complexes.     

New organotin(IV) complexes of nicotinamide, isonicotinamide and some of their novel phosphoric triamide derivatives: Syntheses, spectroscopic study and crystal structures

Three novel phosphoramidate ligands with formula , R = Nicotinamide(nia), R′ = NHC(CH₃)₃(L₁), NH(C₆H₁₁) (L₂); R = isonicotinamide(iso), NH(C₆H₁₁) (L₃) and their new organotin(IV) complexes with formula SnCl₂(CH₃)₂(X)₂, X = L₁ (C₁), L₂ (C₂), L₃ (C₃) plus SnCl₂(CH₃)₂(L₄)₂(C₄), L₄ = isoP(O)[NHC(CH₃)₃]₂, were synthesized and characterized by ¹H, ¹³C, ³¹P,¹¹⁹Sn NMR, IR, UV-Vis spectroscopy and elemental analysis. Two novel complexes of nia and iso with formula SnCl₂(CH₃)₂(X)₂, X = nia (C₅), iso (C₆) were also prepared and all the complexes were spectroscopically studied in comparison to their related ligands and to each other. The crystal structure of complexes C₁, C₃, C₄, and C₅ were determined by X-ray crystallography. -Sn-Cl···H-N- major hydrogen bonds beside other electrostatic interactions produced a three dimensional polymeric cluster in the crystalline lattice of C₁, C₃, C₅ and a two dimensional polymeric chain in C₄. Results showed that coordination of the phosphoramidate ligand (L₄) to Sn in C₄ has been occurred from the nitrogen site of the pyridine ring similar to C_5,C₆ in which there is no PO donor site; however, in C₁ and C₃ the active donor site of corresponding ligands is PO. It seems that in these complexes there is a competition between PO and N_pyridine donor sites and the influential factor which determines the winner site is the type of substituents on phosphorus atom.     

The first ruthenium-based paullones: syntheses, X-ray diffraction structures, and spectroscopic and antiproliferative properties in vitro

Two novel paullone derivatives, namely, 6-(alpha-picolylamino)-7,12-dihydroindolo[3,2-d][1]benzazepine (L1) and 9-bromo-6-(alpha-picolylamino)-7,12-dihydroindolo[3,2-d][1]benzazepine (L2), have been prepared. The reaction of cis-[RuCl2(DMSO)4] (DMSO=dimethyl sulfoxide) with L1 and L2 in a 1:1 molar ratio in dry ethanol at 50 degrees C afforded the complexes trans-[RuIICl2(DMSO)2L1] (1a) and trans-[RuIICl2(DMSO)2L2] (1b) in 26 and 30% yield, respectively. The reaction carried out from the same starting compounds in a 1:2 molar ratio at 75 degrees C led to the formation of [RuIICl(DMSO)(L1)2]Cl (2a) and [RuIICl(DMSO)(L2)2]Cl (2b) in 16 and 23% yield, correspondingly. The products were characterized by elemental analysis, one- and two-dimensional NMR spectroscopy, electrospray ionization mass spectrometry, IR spectroscopy, electronic spectra, cyclic voltammetry, and X-ray crystallography (L1, L2, 1a, and 2b). Complexes 2a and 2b exhibit remarkable antiproliferative activity in three human carcinoma cell lines, A549 (non-small cell lung carcinoma), CH1 (ovarian carcinoma), and SW480 (colon carcinoma). The novel complexes show an intercalative mode of interaction with DNA, which may render them attractive alternatives to metal compounds with a coordinative mode of interaction.     

Molecular structure of 2-Amino-5-(1-methyl-5-nitro-2-imidazolyl)-1,3,4-thiadiazol (Megazol) and related compounds: A concerted study using X-ray crystallography,molecular mechanics,and semiempirical methods

A structural study of three nitroimidazoles was carried out using molecular mechanics, semiempirical methods, and X-ray crystallography. Structural features which might account for the high efficiency of1 (Megazol) as an antiparasitic drug and its opposite, the inactivity of its regiomers2 and3 were examined, i.e., coplanarity of the two rings, preferred conformations, and rotational barriers around the pivot bond between the two rings. For the three compounds an antiperiplanar conformation is preferred for the N(CH₃) and C-S bonds. For compounds1 and3, the rings are coplanar, with2 being somewhat twisted. The geometry obtained by molecular mechanics for compound1 is in excellent agreement with the X-ray structure, and greater confidence can be placed in this method than in semiempirical ones. Similarities observed on the LUMO positions, as well as rotational barriers lead to the conclusion that the differences in biological activity of these compounds do not rely on their ground state properties but rather on their subsequent reactions with oxygen. In addition, the calculations revealed significant structural information of a family of biological importance (nitroimidazoles) and constitute a comparative test for the MM2, AM1, and PM3 methods.     

Synthesis,X-ray crystallography,spectroscopy, electrochemistry,thermal and kinetic study of uranyl Schiff base complexes

Uranyl(VI) complexes [UO₂(L)(solvent)], where L denotes an asymmetric N₂O₂ Schiff base (salpyr, 3-MeOsalpyr, 4-MeOsalpyr, 5-MeOsalpyr, 5-Clsalpyr or 5-Brsalpyr; salpyr is N,N′-bis(salicyliden)-2,3-diaminopyridine), were synthesized and characterized in solution (UV–vis, ¹H NMR, cyclic voltammetry) and in the solid-state (X-ray crystallography, IR, TGA, C H N.). X-ray crystallography of UO₂(3-MeOsalpyr) revealed coordination of the uranyl by the tetradentate Schiff base and one disordered solvent, resulting in seven-coordinate uranium. Another disordered solvent was not coordinated. Cyclic voltammetry of [U^VIO₂(L)(solvent)] in acetonitrile was used to investigate the effect of the substituents of the Schiff base ligands on oxidation and reduction potential. The quasi-reversible redox reaction without any successive reactions was accelerated by groups with lesser electron withdrawing. We also investigated the kinetics and mechanism of the exchange reaction of the coordinated solvent with tributylphosphine using spectrophotometric method. The second-order rate constants at four temperatures and activation parameters showed an associative mechanism for all corresponding complexes with the following trend: UO₂(5-Clsalpyr)?>?UO₂(5-Brsalpyr)?>?UO₂(3-MeOsalpyr)?>?UO₂(4-MeOsalpyr)?>?UO₂(salpyr)?>?UO₂(5-MeOsalpyr). It was concluded that the steric and electronic properties of the complexes were important for the reaction rate.     

Conformational studies of N-carbomethoxy-2-alkoxyindolenines by dynamic NMR, crystallography, and molecular mechanics

The synthesis of N-carbomethoxy-2-alkoxyindolenines and the transformation to their tautomeric indoles is reported. Variable-temperature ¹H NMR studies of these 2-alkoxyindolenines evidenced dynamic processes involving two low-energy E and Z equilibrating conformers around the N-C(O) carbamate bond, for which the barriers (ΔG^≠) between the two conformations are in the order of 12.5-13.9 kcal/mol, as deduced from computational NMR line shape simulations. The rotational barrier decreases as the bulkiness of the alkoxyl group increases, with the E conformer being always more stable. Molecular mechanics calculations evidenced a preferred quasi-axial position of the alkoxyl group in the five-membered ring as the steric effect increases, in agreement with X-ray diffraction studies.     

Synthesis and characterization of two cyclic organosiloxanes by multinuclear NMR spectroscopy and X-ray crystallography

1,3-[2′,6′-Pyridinebis(methyleneoxy)]-1,3-bis(diphenyl)cyclodisiloxane (9) and 2,6-pyridinebis(1,1-diphenylethoxy)diphenylsilane (11) were obtained from 2,6-pyridinediol derivatives with dichlorodiphenylsilane. An N→Si interaction is present in 2,6-pyridinebis(1,1-diphenylethoxy)diphenylsilane, which also shows fluxional behavior. The activation energy of 13.2 kcal mol⁻¹ for 11 was obtained for the intramolecular exchange between the phenyl groups from a variable-temperature ¹H-NMR study. The compounds were characterized by ¹H-, ¹³C- and ²⁹Si-NMR and their structures were established by X-ray crystallographic studies.     

Synthesis, characterization, protonation studies and X-ray crystal structure of ReH5(PPh3)2(PTA) (PTA = 1,3,5-triaza-7-phosphaadamantane)

The novel rhenium pentahydride complex [ReH₅(PPh₃)₂(PTA)] (2) was synthesized by dihydrogen replacement from the reaction of [ReH₇(PPh₃)₂] with PTA in refluxing THF. Variable temperature NMR studies indicate that 2 is a classic polyhydride (T_1(min) = 133 ms). This result agrees with the structure of 2, determined by X-ray crystallography at low temperature. The compound shows high conformational rigidity which allows for the investigation of the various hydride-exchanging processes by NMR methods. Reactions of 2 with equimolecular amounts of either HFIP or HBF₄ · Et₂O at 183 K afford [ReH₅(PPh₃)₂{PTA(H)}]⁺ (3) via protonation of one of the nitrogen atoms on the PTA ligand. When 5 equivalents of HBF₄ · Et₂O are used, additional protonation of one hydride ligand takes place to generate the thermally unstable dication [ReH₄(η²-H₂)(PPh₃)₂{PTA(H)}]²⁺ (4), as confirmed by ¹H NMR and T₁ analysis. IR monitoring of the reaction between 2 and CF₃COOD at low temperature shows the formation of the hydrogen bonded complex [ReH₅(PPh₃)₂{PTA?DOC(O)CF₃}] (5) and of the ionic pair [ReH₅(PPh₃)₂{PTA(D)?OC(O)CF₃}] (6) preceding the proton transfer step leading to 3.     

A new hydrogen-bonded pseudo-dimer Mn(III) Schiff base complex. The synthesis, X-ray structure and spectroscopic studies

A new hydrogen-bonded pseudo-dimer, [Mn(III)L1(CH₃CH₂OH)]₂(ClO₄) (1) (L1 = N,N′-bis(2-hydroxy-1-naphthalidenato)-1,2-diaminopropane) has been synthesized and characterized by UV–vis, IR, elemental analysis and crystal structure analysis. The single crystal X-ray diffraction reveals that the structure affords an elongated octahedral MnN₂O₄ coordination environment, geometry with the four donor atoms of the tetradentate Schiff base in the equatorial plane and with two ethanol molecule in axial positions with Mn–O = 2.265(2) and 2.266(2) Å.     

Structural and spectroscopic studies of silylated cyclo- and bicyclosilanes

A number of cyclo-and bicyclosilanes have been prepared and structurally characterized by X-ray crystallography and Raman spectroscopy. 1,1,4,4- and 1,1,3,3-tetrakis(trimethylsilyl)octamethylcyclohexasilanes were found to exhibit unusual twist- and twisted boat-conformations. The UV absorption properties of all compounds were studied and found to show absorption maxima red shifted compared to the parent compound dodecamethylcyclohexasilane. Dedicated to Prof. Mitsuo Kira on the occasion of his reception of the Wacker Silicon Award 2005 and in recongnition of his numerous outstanding achievements in organosilicon chemistry.     

X-ray absorption spectroscopic studies on solid oxide fuel cells and proton-conducting ceramic fuel cells

X-ray absorption spectroscopy (XAS) is one of the best techniques to obtain the information on the electronic and local structures of materials. In the last few decades, XAS becomes a common analytical technique for the investigation of solid oxide fuel cells and proton-conducting ceramic fuel cells. In particular, operando and/or advanced XAS measurements can be recently available with the increased accessibility of synchrotron radiation. In this article, recent trends of solid oxide fuel cell and proton-conducting ceramic fuel cell researches using XAS are overviewed.     

Synthesis of platinum-iodo-alkyl/aryl complexes in ligand-exchange reactions: Determination of the structure of Pt{(S,S)-bdpp}(X)I complexes (X = Me, I) by X-ray crystallography

Pt{(S,S)-bdpp}(R)I (bdpp = 2,4-bis(diphenylphosphino)pentane; R = Me, Ph, Bz, 2-Tioph) complexes were formed in alkyl/aryl ligand - iodide ligand-exchange reactions by reacting the corresponding Pt{(S,S)-bdpp}R₂ complexes with methyl iodide. The Pt{(S,S)-bdpp}(Me)I complex was isolated and fully characterised. The influence of the X ligand on the platinum-bdpp chelate conformation was investigated in Pt{(S,S)-bdpp}(X)I (X = I, SnCl₃, Me) complex series by means of X-ray crystallography.