Direct structural identification of polysaccharides from red algae by FTIR microspectrometry II: Identification of the constituents ofGracilaria verrucosa

The use of the infrared microspectrometry analytical technique as a new tool for the identification of the polysaccharides contained in the red algaeGracilaria verrucosa has demonstrated that in addition to agar spectra, features of the other coexisting constituents can also be obtained. Indeed, the infrared spectra recorded previously, all exhibit two important bands at about 1645 and 1530cm^–1. These two bands were not present in the infrared spectra of the extracted agars and they are expected to be due to the amide I and amide II protein vibrations. In order to confirm this supposition, we have applied some enzymatic treatments, firstly on the whole algae and secondly on the ground algae (the algae has been previously depigmented and then dehydrated). Agarase, xylanase and cellulase were successively carried out on the algae. The last resulting spectrum, i.e. the spectrum obtained from the fraction which has undergone the three treatments, has been identified to be characteristic of proteins. This spectrum contained, both the amide I and II vibrations and in addition, weak absorption at 1230 cm^–1 due probably to the amide III, was observed. Additional weak bands in the 1400–1300 cm^–1 due to the different skeletal modes of the proteins were also present in this spectrum.The infrared spectra also revealed that the use of the enzymatic treatments on the ground algae is more efficient than when it is carried out on the whole algae.     

Far-infrared spectra of lanthanide complexes with 8-hydroxyquinoline

Summary Vibrational spectra of lanthanide oxines have been measured in the far-infrared region. In addition, the similar yttrium complex was investigated for further experimental evidence for the proposed band assignments. The most important metal-oxygen and metal-nitrogen bond vibrations have been attributed to absorptions between 390–350 cm^–1 and 210–170 cm^–1, respectively.

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Ferne IR-Spektren von Lanthanidenkomplexen mit 8-Hydroxychinolin

Zusammenfassung Es wurden die Vibrationsspektren von Lanthanid-Oxinen im fernen IR-Bereich gemessen. Zusätzlich wurde der analoge Yttrium-Komplex untersucht, um die Bandenzuordnungen experimentell zu stützen. Die wichtigsten Metall-Sauerstoff- und Metall-Stickstoff-Bindungsschwingungen wurden den Absorptionen zwischen 390–350 cm^–1 und 210–170 cm^–1 zugeordnet.

     

Calculations of silicooxygen ring vibration frequencies

In the work model calculations of the vibrations of ideally isolated silicooxygen rings (using PM3 method) have been carried out. three-, four-, and six-membered rings have been considered. It has been found that that the three-membered silicooxygen rings are flat and practically undeformed showing D_3h symmetry. The rings of higher number of ring members (i.e. n>3) are deformed to some extent. The deformation reveals itself most significantly in the Si–O–Si bond angles distribution. In the case of all the rings the bridging Si–O–Si bonds are ca. 0.02–0.04 Å shorter than the non-bridging Si–O⁻ bonds. Hypothetical IR spectra for all the rings considered have been also calculated. Analysis of these hypothetical spectra leads to the conclusion that the whole spectrum can be divided into four wavenumbers regions, 1200–1100 cm⁻¹ stretching Si–O(Si) vibrations; 1000–800 cm⁻¹ stretching Si–O⁻ vibrations; 800–600 cm⁻¹; the region in which a band characteristic of silicooxygen rings appears, and below 600 cm⁻¹ bending ⁻O–Si–O⁻ and (Si)O–Si–O(Si). It has been also found that as the number of ring members increases the ‘ring band’ shifts to lower wavenumbers: 725 cm⁻¹ for three-membered rings, 650 cm⁻¹ for four-membered rings and 610 cm⁻¹ for six-membered rings. Calculated spectra have been compared with the experimental spectra of cyclosilicates. They showed good agreement in the 1200–600 cm⁻¹ region. In the experimental spectra as well as in the calculated ones, with increasing the number of ring members the ‘ring band’ shifts towards lower wavenumbers.     

Infrared spectra of cyclic ethers and their derivatives

The IR spectra of six monosubstituted and of four 2,6-disubstituted 1,4-dioxanes have been studied in the 650–1800cm^–1 region. The assignment of the bands due to the vibrations of the 1,4-dioxane ring and to the deformation vibrations of the methylene groups of the ring is given. The appearance of a whole series of new absorption bands on passing from unsubstituted 1,4-dioxane to its derivatives is explained by the change in the symmetry of the molecule and the removal of the prohibition from the vibrations previously inactive in the IR spectra connected with this reduction in symmetry. It is proposed to use, in order to confirm the presence of a 1,4-dioxane ring in a molecule from the results of IR spectroscopy, not only the 1126-cm^–1 band but the whole group of bands lying in the frequency ranges 800–950, 1000–1150, and 1200–1300 cm^–1.For part I, see [3].     

A spectroscopic investigation of the carrageenans and agar in the 1500-100 cm−1 spectral range

Fourier transform infrared (FTIR) and Raman spectra in the 1600-100 cm⁻¹ range have been employed in a structural analysis of biopolymers of the polygalactane type. In spite of the complexity of the spectra in this region, precise assignments have been made, first on the basis of previously calculated frequencies of the basic unit (d-galactose) and secondly by comparing the spectra of kappa-, iota-, and lambda-carrageenans, as well as agar and appropriate disaccharides. The results of this work provide confirmation of previous assignments of IR absorptions at 930, 820, 805 and 845 cm ⁻¹ and the interpretation of several other bands, notably those due to bending vibrations of the glycosidic linkages and those between 1040 and 1010 cm⁻¹. The latter are associated with the OSO symmetrical stretch. Assignments are also presented for the 700-100 cm⁻¹ region, on which there are no previous reports. The present analysis may provide a basis for further studies of the conformational changes accompanying gelation, a process which is different from one polygalactane to another.     

Conformational Stability, Raman and Infrared Spectra, Vibrational Assignment, and Ab Initio Calculations of Allyltrifluorosilane

The Raman spectra (3500 to 30 cm^–1) of allyltrifluorosilane, CH₂CHCH₂SiF₃, in the liquid with quantitative depolarization ratios and solid states, and the infrared spectra (3500 to 30 cm^–1) of the gas and solid have been recorded. Additionally, the mid-infrared spectra of the sample dissolved in liquified xenon as a function of temperature (–100° to –55°C) have been recorded. All of these data indicate there are two conformers, the more stable gauche rotamer and a very small amount of the cis conformer in the fluid states, but only the gauche form remains in the polycrystalline solid. The variable temperature studies of the infrared spectrum of the xenon solution indicate a relatively large enthalpy difference of 354±30 cm^–1 (4.23±0.36 kJ/mol) between the conformers. The fundamental frequencies for the asymmetric (54 cm^–1) and SiF₃ (48 cm^–1) torsions for the gauche conformer were observed in the far infrared spectrum, and from the SiF₃ torsional frequency the barrier to internal rotation is calculated to have a value of 525 cm^–1 (6.28 kJ/mol). A complete vibrational assignment is presented for the gauche conformer that is consistent with the predicted wavenumbers utilizing the force constants from ab initio MP2/6-31G* calculations. The optimized geometries, conformational stabilities, harmonic force fields, infrared intensities, Raman activities, depolarization ratios, and vibrational wavenumbers have been obtained from RHF/6-31G* and/or MP2/6-31G* ab initio calculations. These quantities are compared to the corresponding experimental quantities when appropriate as well as with corresponding results for some similar molecules.Taken in part from the dissertation of Y. E. Nashed, which will be submitted to the Department of Chemistry in partial fulfillment of the Ph.D. degree     

Far-infrared spectrum,barrier to internal rotation,ro structure,and ab initio calculations for acetylacetylene

The far-infrared spectrum has been recorded from 50 to 360 cm^–1 at a resolution of 0.10 cm^–1 for acetyiacetylene (1-butyne-3-one], CH₃C(O)CCH. The fundamental methyl torsion has been observed at 117.94 cm^–1, from which a periodic barrier to internal rotation has been calculated to be 346 cm^–1 (989 cal mol^–1]. Infrared spectra (3500-50 cm^–1] of the gas and solid and the Raman spectra (3500-100 cm^–1) of the gas, liquid, and solid are reported. Utilizing previously reported rotational constants for three isotopic species,r _o structural parameters have been determined for the heavy-atom skeleton. The fundamental vibrational frequencies, barrier to internal rotation, and structural parameters that have been obtained experimentally are compared to those obtained from ab initio Hartree-Fock calculations employing 3-21G, 6-31G, and DZ basis sets and to the corresponding quantities for some similar molecules.     

Raman spectra in the libration region of concentrated aqueous solutions of lithium-6 and lithium-7 halides. Evidence for tetrahedral Li(OH2) 4 +

The Raman spectra of saturated solutions of⁶LiCl and⁷LiCl have been decomposed into Gaussian components, one of which is a polarized band that occurs at 360 cm^–1 when the ion is⁶Li⁺ and shifts to 335 cm^–1 when the ion is⁷Li⁺. Equivalent bands occur in the spectra of saturated solutions of⁶LiBr and⁷LiBr at 343 and 320 cm^–1, respectively. These bands are assigned to solvent-separated ion aggregates. The Raman spectra of 8.0 and 3.5 m solutions of the isotopic lithium chlorides have been decomposed into five Gaussian components, three of which are assigned to water librations. In addition, there is a polarized band at 440 cm^–1 independent of the lithium isotope used, and a depolarized band which occurs at 385 cm^–1 in the⁶LiCl solutions and 360 cm^–1 in the⁷LiCl solutions. We interpret these two additional bands as theA ₁ andF ₂ stretching modes of Li⁺ tetrahedrally solvated by water molecules.     

Instrumental barriers in biological Fourier transform infrared spectroscopy

Biological applications of infrared spectroscopy have pressed for ever greater instrumental capabilities in terms of spectral sensitivity and quantitative exactness. Improved instrumentation has provided measurement of many vibrational modes in biological samples that previously were lost in noise. With highly optimized sampling conditions, useful measurements have been made with a peak-to-peak noise level less than 5 microabsorbance (5×10^–6 absorbance), at 0.5 cm^–1 resolution. However, optical and instrumental instabilities often result in sine waves that are not totally removed by the ratio of sample to reference. These often limit effective spectral sensitivity to 50 or 100 microabsorbance, peak-to-peak, and constitute a non-random noise. Non-atmospheric absorptions, especially one at 1959 cm^–1 with 0.8 cm^–1 band width (FWHM) are reported. The latter is due to a trace impurity in the KBr beam splitter substrate and compensator plate. Improvements in instrumentation and sampling conditions are expected to yield measurements of absorption bands as small as 50 microabsorbance with excellent signal/noise.     

Raman and Infrared Spectra, Ab Initio Calculations, Normal Coordinate Analysis, and Conformational Stability of 2-Methoxypropene

The Raman (3500–40 cm^–1) and infrared (3500–70 cm^–1) spectra of gaseous and solid 2-methoxypropene, CH₃O(CH₃)C=CH₂, and the isotopomers, CD₃O(CH₃)C=CH₂ and CH₃O(CD₃)C=CD₂ have been recorded. In addition, the Raman spectra of the liquids have been recorded with qualitative depolarization measurements. All of these data indicate that only one conformer is present in the fluid phases at ambient temperature and this form is the cis conformer, which remains in the solid. Assignments are provided for the fundamentals of all three isotopomers for the cis conformer with C_s symmetry. The far-infrared spectra of all three isotopic species have been recorded at a resolution of 0.1 cm^–1 in the gas and 1.0 cm^–1 in the solid. The parameters of the potential function governing the asymmetric torsion are determined to be V₃ = 1485 ± 9 cm^–1 and V₆ = –55 ± 4 cm^–1 for the d₀ compound, where only two terms were determined, since a second conformer was not evident. The barrier to internal rotation for the methyl group attached to the oxygen atom is 1370 ± 8 cm^–1 and the C—CH₃ barrier is 772 ± 5 cm^–1. Ab initio calculations with full electron correlation have been carried out by the perturbation method to second order to obtain the equilibrium structural parameters, harmonic force constants, fundamental frequencies, infrared intensities, Raman activities, depolarization values, and conformational stability. The predicted values have been compared to the experimental values where appropriate.     

Zinc(II), cadmium(II) and mercury(II) halide pyrrolidine-2-selone complexes

Summary Reaction of zinc(II), cadmium(II) and mercury(II) halides with Pyrrolidine-2-selone yields complexes of general formula ML₂X₂ (X = Cl, Br or I) which are monomeric, tetrahedral and Se-bonded to the metals. The comparison of their i.r. spectra with the spectrum of the free ligand confirms that the band at 1005 cm^–1 in Pyrrolidine-2-selone arises predominantly from the C=Se stretching vibration. The metalhalogen absorptions above 200 cm^–1 are identified.This work was supported by the National Research Council (C.N.R.) of Italy.     

Water in melts: Raman spectral investigation of the molten Ca(NO3)2·4H2O−KNO3 system

The Raman spectra of molten mixtures of Ca(NO₃)₂\4H₂O–KNO₃ have been examined, covering the concentration range of 0–70 mole% KNO₃. The frequencies in the spectra of the mixtures have been found to change slightly with concentration. Striking variations in the band shapes have been observed in the regions corresponding to the O–H stretching mode (2850–3850 cm^–1) and the v₄-NO ₃ ^– mode (700–750 cm^–). The results are discussed in terms of perturbed quasi-lattice structure for the melt, in which there could be a displacement of water molecules in the first coordination sphere around Ca²⁺ by the NO ₃ ^– ion.     

High resolution infrared spectroscopy of the sun and the earth's atmosphere from space

The atmospheric trace molecule spectroscopy experiment (ATMOS) was designed to obtain high-resolution absorption spectra of the atmosphere from earth orbit, from which the vertical distributions of a large number of minor and trace molecular constituents could be retrieved. The ATMOS instrument is an FFT spectrometer covering the 600 to 5000 cm^–1 frequency range and uses a double-passed, tilt-compensated optical configuration, with the two retroreflectors moving reciprocally. The scan time of 2 s gives spectra with an unapodized resolution of 0.01 cm^–1, spaced 4 km apart, vertically.The first flight of ATMOS was made in April, 1985, as part of the Shuttle Spacelab-3 science payload. A total of 19 sunrise and sunset occultations were observed, which resulted in the acquisition of more than 1000 atmospheric spectra with an equal number of solar only scans. The spectra show absorptions of some 40 different atmospheric constituents, some of which are discernable at altitudes well into the thermosphère (i.e., up to about 150 km). The high signal/noise ratio and repeatability of the spectra have enabled a wealth of new atmospheric data to be retrieved, including the first positive identifications of such key reservoir species as COF₂, HNO₄, and N₂O₅, simultaneous vertical distributions of the minor gases from 5 to 140 km, the entire odd-nitrogen family in the stratosphere, and most of the halogen source gases with their corresponding reservoir and sink species. Measurements of the frequencies of large numbers of spectral lines has yielded Doppler shifts from which zonal winds, having a precision of the order of 2 m/s, have been retrieved throughout the stratosphere and mésosphère.     

Differentiation of solvated spironolactone samples by FT-Raman and FT-IR diffuse reflectance spectroscopy

Summary Five solvates of spironolactone were prepared by crystallization from absolute methanol, acetonitrile, absolute ethanol, ethyl acetate, and benzene, and characterized by diffuse reflectance infrared Fourier transform spectroscopy (DRIFTS) and by FT-Raman spectroscopy. Of these solvates, all were found to be monosolvated except that formed with acetonitrile which gave a spironolactone-acetonitrile (2:1) complex as determined by elemental microanalysis. Distinctive IR and Raman spectral features of the solvates are discussed. Remarkable similarity is seen in the Raman spectra (1800–400 cm^–1) of the solvates obtained from methanol, ethanol, and ethyl acetate. The Raman spectrum of the benzene solvate is particularly useful for showing the presence of benzene because of the very intense band near 1000 cm^–1 which is unique to the Raman effect.Presented at the 36th Canadian Spectroscopy Conference, 1–3 August 1990, at Brock University, St. Catharines, ON, Canada     

Microimaging FT-IR spectroscopy on pathological breast tissues

Microimaging Fourier transform infrared spectroscopy is able to monitor differentiation between normal and malignant tissues. All the specimens, previously submitted to histological analysis, displayed abnormal spectra compared with the corresponding normal tissues with changes in many diagnostic bands like those arising from phosphate, C–O and CH stretching vibrational modes. The comparison between cancer (K) and connective (C) spectra evidenced the following differences: in the vCH region 3000–2800 cm⁻¹ no hypomethylation effect was evident in K; the convolution of the bands of connective indicated an expected higher membrane fluidity; in the neoplastic zone, Amide I and II modes showed convoluted bands with maxima at 1651 and 1547 cm⁻¹, respectively, indicating an α-helix conformation of proteins due to changes in the secondary structure proteins upon carcinogenesis. Other signature bands, such as the deformation O–P–O phosphate band at 965 cm⁻¹, suggested DNA conformational changes in solid cancer, infiltrating cancer and neoplasia in the region 1350–800 cm⁻¹. These characteristic bands have been monitored as a function of the degree of cancer progression. Chemometric methods, such as principal component analysis (PCA) and hierarchical clustering analysis (HCA) have been used in order to distinguish spectra of neoplastic and normal zones.     

DFT Calculation of the Structure of the Coordination Unit of Chlrophyll-Containing Proteins

In a DFT/B3LYP study (6-31G(d) basis set), the structure, IR spectra, and thermodynamic parameters of Mg-porphin-imidazole and Mg-khlorin-imidazole complexes, serving as models of the coordination unit of chlorophyll in proteins, have been calculated. When an axial ligand is added, the Mg atom goes out of the plane of the tetrapyrrole macrocycle, the deviation being 0.34 Å. The frequency of the out-of-plane vibrations of Mg in the complexes increased by 50 cm⁻¹, and the frequencies of the two in-plane vibrations decreased by 25 cm^{− 1}–30 cm⁻¹. IR vibrational spectra have been simulated.Original Russian Text Copyright © 2004 by M. D. Elkin, O. D. Ziganshina, K. V. Berezin, and V. V. Nechaev__________Translated from Zhurnal Strukturnoi Khimii, Vol. 45, No. 6, pp. 1132–1135, November–December, 2004.     

Surface characterization and heats of adsorption of chromatographic alumina gel

The porous nature of chromatographic alumina gel has been investigated by adsorption/condensation processes and electron microscopy. Having 63% porosity, the gel is very porous. Total pore volume as determined by the fluid-displacement method is 0.497 cm³ g^–1. Its specific surface area, as determined by water vapor adsorption, is 225 m² g^–1. Micropore volume, as determined by utilizing Gurwitsch's rule, turns out to be 0.262 cm³ g^–1. The greater portion of the surface area and pore volume occurs in small and transitional pores, with average pore radii (hydraulic) less than 2.1 nm.Organic vapors, such as methyl ethyl ketone, acetone, methyl acetate, and methyl alcohol, were adsorbed on the gel between 0 and 36°C under vacuum, and the data were recorded on a Cahn-1000 electrobalance device. Isosteric heats of adsorption were calculated by applying the Clausius Clapeyron equation to the adsorption isosters at different surface coverages. Two types of adsorption processes, one with low activation energy and other with high activation energy can be distinguished. The increase in values ofq _st indicates that increasing temperature changes physical adsorption into chemisorption.     

Spektroskopische Studien an O-Heterocyclen

Zusammenfassung An den Infrarot-Spektren von etwa 30 Derivaten des 1,3-Dioxans wird gezeigt, daß diese Spektren genügend Regelmäßigkeiten aufweisen, um 1,3-Dioxan-Abkömmlinge sicher erkennen zu können. Bei 1,3-Dioxanen, die an einer Stelle des Ringes substituiert sind, kommen die Erwartungsbereiche 2730–2795, 1160–1175, 1070–1110 und 1025–1050 cm^–1 in Betracht, innerhalb derer intensive und scharfe Absorptionen zu beobachten sind. Bei den 1,3-Dioxanen, die an zwei Stellen des Ringes substituiert sind, kann man als absolut sichere Bereiche 1100–1120 und 1025–1055 cm^–1 ansehen, während die Absorption zwischen 2730 und 2795 cm^–1 in einigen wenigen Fällen von Substanzen hoher Symmetrie fortfällt bzw. nur in sehr geringer Intensität auftritt.Carbonylgruppen, die von zwei 1,3-Dioxanringen unmittelbar eingeschlossen sind, absorbieren zwischen 1685 und 1692 cm^–1.

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Summary Only little sporadic information is available from the literature on infrared spectroscopy of 1,3-dioxane derivatives. In order to find out any regularities in the infrared spectra which might be suitable for analytical purposes, a major number of 1,3-dioxane derivatives was subjected to spectroscopy, and the spectrograms were interpreted in relation to the structure of each compound.The studies included compounds substituted at one position of the 1,3-dioxane ring; compounds substituted at two or more positions of the 1,3-dioxane ring or rings; and 1,3-dioxane derivatives in which one or several C atoms are common to two ring structures. In a number of spectral regions, more or less narrow expectancy ranges were found to exist in which intensive absorptions could be observed when 1,3-dioxane derivatives were present. The correlation of individual bands of the ring structure is briefly dealt with. Also discussed is the influence of the 1,3-dioxane rings on characteristic absorptions of adjacent functional groups.

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Teil II, Tetrahydropyran-Derivate, in Vorbereitung.     

Raman characterization of amorphous carbon films

Amorphous carbon films, deposited with the LASER-ARC technique, have been characterized using Raman scattering experiments at an excitation wavelength of 633 nm provided by a He-Ne laser. To distinguish between the homogeneous amorphous film and incorporated particles area resolved measurements have been carried out due to the laser spot diameter of 1 m. Typical diamondlike (DLC) films, grown near room temperature, show a broad Raman band between 1000 cm^–1 and 1800 cm^–1 fitted very well by two gaussian distributions. Films deposited at higher substrate temperatures reveal more graphitic features in the spectra. The spectra of particles consists of a graphite-like portion originated from the graphitic structure of the particle and a diamond-like portion caused by the covering DLC film. The degree of disorder and diamond-likeness in the film structure is quantified by the peak position, the full width at half maximum (FWHM) and intensity relation of the fitted D- and G-peaks.     

Vibrational spectra of 2-biphenylmethanol. Spectrum simulation and molecular structure

The vibrational spectra of a solid crystalline sample of 2-biphenylmethanol have been measured at room temperature. The IR absorption spectra were recorded in the range 400 cm^–1–3600 cm^–1; Raman spectra were measured in the range 10 cm^–1–1640 cm^–1. The direct mechanical and optoelectronic problems were solved using the fragment method realized as Lev-100 software; the intensity distribution in the IR spectrum of 2-biphenylmethanol was obtained by the same method. The experimental Raman and IR absorption spectra were interpreted by analyzing the calculated data on the frequencies and forms of normal vibrations and their intensities in the IR spectra. IR absorption spectra were simulated for several models of 2-biphenylmethanol conformers that differ in the mutual orientation of fragments. Based on the results of simulation and comparison of the calculated and experimental spectra of conformers we suggested a model for the conformer realized in the solid phase under normal conditions.Original Russian Text Copyright © 2004 by L. M. Babkov, J. Baran, N. A. Davydova, J. I. Kukielskii, and S. V. TrukhachevTranslated from Zhurnal Strukturnoi Khimii, Vol. 45, No. 4, pp. 624–631, July–August, 2004.This revised version was published online in April 2005 with a corrected cover date.