A centroid molecular dynamics study of liquid para-hydrogen and ortho-deuterium

Centroid molecular dynamics (CMD) is applied to the study of collective and single-particle dynamics in liquid para-hydrogen at two state points and liquid ortho-deuterium at one state point. The CMD results are compared with the results of classical molecular dynamics, quantum mode coupling theory, a maximum entropy analytic continuation approach, pair-product forward- backward semiclassical dynamics, and available experimental results. The self-diffusion constants are in excellent agreement with the experimental measurements for all systems studied. Furthermore, it is shown that the method is able to adequately describe both the single-particle and collective dynamics of quantum liquids.     

A comparative study of imaginary time path integral based methods for quantum dynamics

The recently introduced approximate many-body quantum simulation method, ring polymer molecular dynamics (RPMD), is compared to the centroid molecular dynamics method (CMD). Comparisons of simulation results for liquid para-hydrogen at two state points and liquid ortho-deuterium at one state point are presented. The calculated quantum correlation functions for the two methods are shown to be in good agreement with one another for a large portion of the time spectrum. However, as the quantum mechanical nature of the system increases, RPMD is less accurate in predicting the kinetic energy of the system than is CMD. A simplified and highly efficient algorithm is proposed which largely corrects this deficiency.     

Ab initio centroid path integral molecular dynamics: application to vibrational dynamics of diatomic molecular systems

An ab initio centroid molecular dynamics (CMD) method is developed by combining the CMD method with the ab initio molecular orbital method. The ab initio CMD method is applied to vibrational dynamics of diatomic molecules, H2 and HF. For the H2 molecule, the temperature dependence of the peak frequency of the vibrational spectral density is investigated. The results are compared with those obtained by the ab initio classical molecular dynamics method and exact quantum mechanical treatment. It is shown that the vibrational frequency obtained from the ab initio CMD approaches the exact first excitation frequency as the temperature lowers. For the HF molecule, the position autocorrelation function is also analyzed in detail. The present CMD method is shown to well reproduce the exact quantum result for the information on the vibrational properties of the system.     

Quantum effects in light and heavy liquid water: A rigid-body centroid molecular dynamics study

The centroid molecular dynamics (CMD) method is applied to the study of liquid water in the context of the rigid-body approximation. This rigid-body CMD technique, which is significantly more efficient than the standard CMD method, is implemented on the TIP4P model for water and used to examine isotopic effects in the equilibrium and dynamical properties of liquid H(2)O and D(2)O. The results obtained with this approach compare remarkably well with those determined previously with path integrals simulations as well as those obtained from the standard CMD method employing flexible models. In addition, an examination of the impact of quantization on the rotational and librational motion of the water molecule is also reported.     

New conditions for validity of the centroid molecular dynamics and ring polymer molecular dynamics

Validity of the centroid molecular dynamics (CMD) and ring polymer molecular dynamics (RPMD) in quantum liquids is studied on an assumption that momenta of liquid particles relax fast. The projection operator method allows one to derive the generalized Langevin equation including a memory effect for the full-quantum canonical (Kubo-transformed) correlation function. Similar equations for the CMD and RPMD correlation functions can be derived too. The comparison of these equations leads to conditions under which the RPMD and CMD correlation functions agree approximately with the full-quantum canonical correlation function. The condition for the RPMD is that the memory effects of the full-quantum and RPMD equations vanish quickly with the same time constants. The CMD correlation function requires additional conditions concerning static correlation.     

Path-integral centroid dynamics for general initial conditions: a nonequilibrium projection operator formulation

The formulation of path-integral centroid dynamics is extended to the quantum dynamics of density operators evolving from general initial states by means of the nonequilibrium projection operator technique. It is shown that the new formulation provides a basis for applying the method of centroid dynamics to nonequilibrium situations and that it allows the derivation of new formal relations, which can be useful in improving current equilibrium centroid dynamics methods. A simple approximation of uniform relaxation for the unprojected portion of the Liouville space propagator leads to a class of practically solvable equations of motion for the centroid variables, but with an undetermined parameter of relaxation. This new class of equations encompasses the centroid molecular-dynamics (CMD) method as a limiting case, and can be applied to both equilibrium and nonequilibrium situations. Tests for the equilibrium dynamics of one-dimensional model systems demonstrate that the new equations with appropriate choice of the relaxation parameter are comparable to the CMD method.     

Comparison of approximate quantum simulation methods applied to normal liquid helium at 4 K

The Feynman-Kleinert linearized path integral molecular dynamics (FK-LPI), ring polymer molecular dynamics (RPMD), and centroid molecular dynamics (CMD) methods are applied to the simulation of normal liquid helium. Comparisons of the simulation results at the T = 4 K and rho = 0.01873 A-3 state point are presented. The calculated quantum correlation functions for the three methods show significant differences, both in the short time and in the intermediate regions of the spectrum. Our simulation results are also compared to the recent results of other approximate quantum simulation methods. We find that FK-LPI qualitatively agrees with other approximate quantum simulation results while CMD and RPMD predict a qualitatively different impulsive rebound in the velocity autocorrelation function. Frequency space analysis reveals that RPMD exhibits a broad high-frequency tail similar to that from quantum mode coupling theory and numerical analytic continuation approaches, while FK-LPI provides a somewhat more rapid decay at high frequency than any of these three methods. CMD manifests a high-frequency component that is greatly reduced compared with the other methods.     

On the calculation of single-particle time correlation functions from Bose-Einstein centroid dynamics

The calculation of single-particle time correlation functions using the Bose-Einstein centroid dynamics formalism is discussed. A new definition of the quasidensity operator is used to calculate the centroid force on a given particle for an anharmonic system. The force includes correlation effects due to quantum statistics and is used for the calculation of the classical-like dynamics of phase-space centroid variables within the centroid molecular dynamics approximation. Time correlation functions are then obtained for single-particle quantities. These correspond to the double-Kubo transform of exact quantum-mechanical correlation functions. The centroid dynamics results are compared to those of exact basis-set calculations and a good agreement is found. The level of accuracy is in fact the same as what was observed earlier for the calculation of center-of-mass correlation functions for Fermi-Dirac and Bose-Einstein statistics, and for any correlation function for Boltzmann statistics. These results show that it is now possible to use Bose-Einstein centroid molecular dynamics to calculate single-particle correlation functions for systems where quantum exchange effects are present.     

Inclusion of inversion symmetry in centroid molecular dynamics: a possible avenue to recover quantum coherence

Inversion symmetry is included in the operator formulation of the centroid molecular dynamics (CMD). This work involves the development of a symmetry-adapted CMD (SA-CMD), here particularly for symmetrization and antisymmetrization projections. A symmetry-adapted quasidensity operator, as defined by Blinov and Roy [J. Chem. Phys. 115, 7822 (2001)], is employed to obtain the centroid representation of quantum mechanical operators. Numerical examples are given for a single particle confined to one-dimensional symmetric quartic and symmetric double-well potentials. Two SA-CMD simulations are performed separately for both projections, and centroid position autocorrelation functions are obtained. For each projection, the quality of the approximation as well as the accuracy are similar to those of regular CMD. It is shown that individual trajectories from two separate SA-CMD simulations can be properly combined to recover trajectories for Boltzmann statistics. Position autocorrelation functions are compared to the exact quantum mechanical ones. This explicit account of inversion symmetry provides a qualitative improvement on the conventional CMD approach and allows the recovery of some quantum coherence.     

Centroid molecular dynamics approach to the transport properties of liquid para-hydrogen over the wide temperature range

Fundamental transport properties of liquid para-hydrogen (p-H(2)), i.e., diffusion coefficients, thermal conductivity, shear viscosity, and bulk viscosity, have been evaluated by means of the path integral centroid molecular dynamics (CMD) calculations. These transport properties have been obtained over the wide temperature range, 14-32 K. Calculated values of the diffusion coefficients and the shear viscosity are in good agreement with the experimental values at all the investigated temperatures. Although a relatively large deviation is found for the thermal conductivity, the calculated values are less than three times the amount of the experimental values at any temperature. On the other hand, the classical molecular dynamics has led all the transport properties to much larger deviation. For the bulk viscosity of liquid p-H(2), which was never known from experiments, the present CMD has given a clear temperature dependence. In addition, from the comparison based on the principle of corresponding states, it has been shown that the marked deviation of the transport properties of liquid p-H(2) from the feature which is expected from the molecular parameters is due to the quantum effect.     

Evaluation of nonlinear quantum time correlation functions within the centroid dynamics formulation

A method to evaluate nonlinear centroid correlation functions is presented that is amenable to simple numerical computation. It can be implemented with the centroid molecular dynamics method for approximate quantum dynamics with no additional assumptions. Two nonlinear correlation functions are evaluated for a model potential using this scheme and compared with results from exact quantum calculations.     

An efficient and accurate implementation of centroid molecular dynamics using a Gaussian approximation

An approximate method for Centroid Molecular Dynamics (CMD) is presented which uses a Gaussian approximation. The resulting method, called Gaussian CMD (GCMD), is 100-1000 times faster than CMD because it replaces explicit path-integral sampling, which is the most time-consuming part of CMD, with a Gaussian averaging, which can be done analytically. Several methods for computing the Gaussian width parameter in the GCMD approach are also presented. This new method is shown to give satisfactory results for the position correlation function in simple one-dimensional systems when CMD itself is consistent with the exact result. The GCMD and CMD results are also compared for the case of 1-dimensional systems coupled to harmonic baths, with good success. GCMD is further compared to CMD with good success for liquid para-hydrogen at two different temperatures, 14 K and 25 K, and for ortho-deuterium at 20.7 K.     

An accurate and simple quantum model for liquid water

The path-integral molecular dynamics and centroid molecular dynamics methods have been applied to investigate the behavior of liquid water at ambient conditions starting from a recently developed simple point charge/flexible (SPC/Fw) model. Several quantum structural, thermodynamic, and dynamical properties have been computed and compared to the corresponding classical values, as well as to the available experimental data. The path-integral molecular dynamics simulations show that the inclusion of quantum effects results in a less structured liquid with a reduced amount of hydrogen bonding in comparison to its classical analog. The nuclear quantization also leads to a smaller dielectric constant and a larger diffusion coefficient relative to the corresponding classical values. Collective and single molecule time correlation functions show a faster decay than their classical counterparts. Good agreement with the experimental measurements in the low-frequency region is obtained for the quantum infrared spectrum, which also shows a higher intensity and a redshift relative to its classical analog. A modification of the original parametrization of the SPC/Fw model is suggested and tested in order to construct an accurate quantum model, called q-SPC/Fw, for liquid water. The quantum results for several thermodynamic and dynamical properties computed with the new model are shown to be in a significantly better agreement with the experimental data. Finally, a force-matching approach was applied to the q-SPC/Fw model to derive an effective quantum force field for liquid water in which the effects due to the nuclear quantization are explicitly distinguished from those due to the underlying molecular interactions. Thermodynamic and dynamical properties computed using standard classical simulations with this effective quantum potential are found in excellent agreement with those obtained from significantly more computationally demanding full centroid molecular dynamics simulations. The present results suggest that the inclusion of nuclear quantum effects into an empirical model for water enhances the ability of such model to faithfully represent experimental data, presumably through an increased ability of the model itself to capture realistic physical effects.     

Thermal Gaussian molecular dynamics for quantum dynamics simulations of many-body systems: application to liquid para-hydrogen

A new method, here called thermal Gaussian molecular dynamics (TGMD), for simulating the dynamics of quantum many-body systems has recently been introduced [I. Georgescu and V. A. Mandelshtam, Phys. Rev. B 82, 094305 (2010)]. As in the centroid molecular dynamics (CMD), in TGMD the N-body quantum system is mapped to an N-body classical system. The associated both effective Hamiltonian and effective force are computed within the variational Gaussian wave-packet approximation. The TGMD is exact for the high-temperature limit, accurate for short times, and preserves the quantum canonical distribution. For a harmonic potential and any form of operator A?, it provides exact time correlation functions C(AB)(t) at least for the case of B, a linear combination of the position, x, and momentum, p, operators. While conceptually similar to CMD and other quantum molecular dynamics approaches, the great advantage of TGMD is its computational efficiency. We introduce the many-body implementation and demonstrate it on the benchmark problem of calculating the velocity time auto-correlation function for liquid para-hydrogen, using a system of up to N = 2592 particles.     

Discontinuous molecular dynamics for rigid bodies: applications

Event-driven molecular dynamics simulations are carried out on two rigid-body systems which differ in the symmetry of their molecular mass distributions. First, simulations of methane in which the molecules interact via discontinuous potentials are compared with simulations in which the molecules interact through standard continuous Lennard-Jones potentials. It is shown that under similar conditions of temperature and pressure, the rigid discontinuous molecular dynamics method reproduces the essential dynamical and structural features found in continuous-potential simulations at both gas and liquid densities. Moreover, the discontinuous molecular dynamics approach is demonstrated to be between 3 and 100 times more efficient than the standard molecular dynamics method depending on the specific conditions of the simulation. The rigid discontinuous molecular dynamics method is also applied to a discontinuous-potential model of a liquid composed of rigid benzene molecules, and equilibrium and dynamical properties are shown to be in qualitative agreement with more detailed continuous-potential models of benzene. The few qualitative differences in the angular dynamics of the two models are related to the relatively crude treatment of variations in the discontinuous repulsive interactions as one benzene molecule rotates by another.     

On the short-time limit of ring polymer molecular dynamics

We examine the short-time accuracy of a class of approximate quantum dynamical techniques that includes the centroid molecular dynamics (CMD) and ring polymer molecular dynamics (RPMD) methods. Both of these methods are based on the path integral molecular dynamics (PIMD) technique for calculating the exact static equilibrium properties of quantum mechanical systems. For Kubo-transformed real-time correlation functions involving operators that are linear functions of positions or momenta, the RPMD and (adiabatic) CMD approximations differ only in the choice of the artificial mass matrix of the system of ring polymer beads that is employed in PIMD. The obvious ansatz for a general method of this type is therefore to regard the elements of the PIMD (or Parrinello-Rahman) mass matrix as an adjustable set of parameters that can be chosen to improve the accuracy of the resulting approximation. We show here that this ansatz leads uniquely to the RPMD approximation when the criterion that is used to select the mass matrix is the short-time accuracy of the Kubo-transformed correlation function. In particular, we show that the leading error in the RPMD position autocorrelation function is O(t(8)) and the error in the velocity autocorrelation function is O(t(6)), for a general anharmonic potential. The corresponding errors in the CMD approximation are O(t(6)) and O(t(4)), respectively.     

Connection between the observable and centroid structural properties of a quantum fluid: application to liquid para-hydrogen

It is shown that the discrepancy between path integral Monte Carlo [M. Zoppi et al., Phys. Rev. B 65, 092204 (2002)] and path integral centroid molecular dynamics [F. J. Bermejo et al., Phys. Rev. Lett. 84, 5359 (2000)] calculations of the static structure factor of liquid para-hydrogen can be explained based on a deconvolution equation connecting centroid and physical radial distribution functions. An explicit expression for the kernel of the deconvolution equation has been obtained using functional derivative techniques. In the superposition approximation, this kernel is given by the functional derivative of the effective potential with respect to the pairwise classical potential. Results of path integral Monte Carlo calculations for the radial distribution function and the static structure factor of liquid para-hydrogen are presented.     

A quantum generalization of intrinsic reaction coordinate using path integral centroid coordinates

We propose a generalization of the intrinsic reaction coordinate (IRC) for quantum many-body systems described in terms of the mass-weighted ring polymer centroids in the imaginary-time path integral theory. This novel kind of reaction coordinate, which may be called the "centroid IRC," corresponds to the minimum free energy path connecting reactant and product states with a least amount of reversible work applied to the center of masses of the quantum nuclei, i.e., the centroids. We provide a numerical procedure to obtain the centroid IRC based on first principles by combining ab initio path integral simulation with the string method. This approach is applied to NH(3) molecule and N(2)H(5) (-) ion as well as their deuterated isotopomers to study the importance of nuclear quantum effects in the intramolecular and intermolecular proton transfer reactions. We find that, in the intramolecular proton transfer (inversion) of NH(3), the free energy barrier for the centroid variables decreases with an amount of about 20% compared to the classical one at the room temperature. In the intermolecular proton transfer of N(2)H(5) (-), the centroid IRC is largely deviated from the "classical" IRC, and the free energy barrier is reduced by the quantum effects even more drastically.     

Centroid molecular dynamics: comparison with exact results for model systems

The relation between the accuracy of centroid molecular dynamics correlation functions, and the geometry of the centroid potential is investigated. It is shown that, depending on the temperature, there exist several regimes, and in each of them certain features of the exact Kubo correlation functions are reproduced. The change of regimes is related to the emergence of barriers in the centroid potential. In order to clarify how the above described picture of regimes is modified in real systems when dissipation is important, a methodology is developed to test the accuracy of centroid correlation functions for the model of a particle coupled to a harmonic heat bath. A modification of the centroid molecular dynamics method to include the influence of the heat bath is introduced. Preliminary results of comparison of centroid molecular dynamics with the numerically exact results of filtered propagator functional method are presented.     

Analytic first and second derivatives of the energy in the fragment molecular orbital method combined with molecular mechanics

Analytic first and second derivatives of the energy are developed for the fragment molecular orbital method interfaced with molecular mechanics in the electrostatic embedding scheme at the level of Hartree-Fock and density functional theory. The importance of the orbital response terms is demonstrated. The role of electrostatic embedding upon molecular vibrations is analyzed, comparing force field and quantum mechanical treatments for an ionic liquid and a solvated protein. The method is applied for 100 protein conformations sampled in molecular dynamics (MD) to take into account the complexity of a flexible protein structure in solution, and a good agreement with experimental data is obtained: Frequencies from an experimental infrared (IR) spectrum are reproduced within 17 cm⁻¹ .