Chloroaluminum phthalocyanine thin films: chemical reaction and molecular orientation

The chemical transformation of the polar chloroaluminum phthalocyanine, AlClPc, to μ-(oxo)bis(phthalocyaninato)aluminum(III), (PcAl)₂O, in thin films on indium tin oxide is studied and its influence on the molecular orientation is discussed. The studies were conducted using complementary spectroscopic techniques: Raman spectroscopy, X-ray photoelectron spectroscopy, and near-edge X-ray absorption fine structure (NEXAFS) spectroscopy. In addition, density functional theory calculations were performed in order to identify specific vibrations and to monitor the product formation. The thin films of AlClPc were annealed in controlled environmental conditions to obtain (PcAl)₂O. It is shown that the chemical transformation in the thin films can proceed only in the presence of water. The influence of the reaction and the annealing on the molecular orientation was studied with Raman spectroscopy and NEXAFS spectroscopy in total electron yield and partial electron yield modes. The comparison of the results obtained from these techniques allows the determination of the molecular orientation of the film as a function of the probing depth.

Valence-band electronic structure of iron phthalocyanine: an experimental and theoretical photoelectron spectroscopy study

The electronic structure of iron phthalocyanine (FePc) in the valence region was examined within a joint theoretical-experimental collaboration. Particular emphasis was placed on the determination of the energy position of the Fe 3d levels in proximity of the highest occupied molecular orbital (HOMO). Photoelectron spectroscopy (PES) measurements were performed on FePc in gas phase at several photon energies in the interval between 21 and 150 eV. Significant variations of the relative intensities were observed, indicating a different elemental and atomic orbital composition of the highest lying spectral features. The electronic structure of a single FePc molecule was first computed by quantum chemical calculations by means of density functional theory (DFT). The hybrid Becke 3-parameter, Lee, Yang and Parr (B3LYP) functional and the semilocal 1996 functional of Perdew, Burke and Ernzerhof (PBE) of the generalized gradient approximation (GGA-)type, exchange-correlation functionals were used. The DFT/B3LYP calculations find that the HOMO is a doubly occupied π-type orbital formed by the carbon 2p electrons, and the HOMO-1 is a mixing of carbon 2p and iron 3d electrons. In contrast, the DFT/PBE calculations find an iron 3d contribution in the HOMO. The experimental photoelectron spectra of the valence band taken at different energies were simulated by means of the Gelius model, taking into account the atomic subshell photoionization cross sections. Moreover, calculations of the electronic structure of FePc using the GGA+U method were performed, where the strong correlations of the Fe 3d electronic states were incorporated through the Hubbard model. Through a comparison with our quantum chemical calculations we find that the best agreement with the experimental results is obtained for a U(eff) value of 5 eV.     

Synthesis and molecular structure of gold triarylcorroles

A number of third-row transition-metal corroles have remained elusive as synthetic targets until now, notably osmium, platinum, and gold corroles. Against this backdrop, we present a simple and general synthesis of β-unsubstituted gold(III) triarylcorroles and the first X-ray crystal structure of such a complex. Comparison with analogous copper and silver corrole structures, supplemented by extensive scalar-relativistic, dispersion-corrected density functional theory calculations, suggests that "inherent saddling" may occur for of all coinage metal corroles. The degree of saddling, however, varies considerably among the three metals, decreasing conspicuously along the series Cu > Ag > Au. The structural differences reflect significant differences in metal-corrole bonding, which are also reflected in the electrochemistry and electronic absorption spectra of the complexes. From Cu to Au, the electronic structure changes from noninnocent metal(II)-corrole(?2-) to relatively innocent metal(III)-corrole(3-).     

Morphology and electronic structure of gold clusters on graphite: Scanning-tunneling techniques and photoemission

We present an experimental study for the geometric and electronic properties of gold clusters grown in nanometer sized pits on graphite in a broad size range from a few ten to more than 10⁴ atoms per cluster. The growth process and the morphology were characterized in detail with scanning tunneling microscopy, transmission electron microscopy and ultraviolet photoelectron spectroscopy (UPS). The size-dependent quantized electronic structure detected with scanning tunneling spectroscopy (STS) for small gold clusters with a few ten up to about 10⁴ atoms per cluster is discussed qualitatively in terms of simple models. For the specific case of the confined Shockley surface state on the top (1 1 1) facets of large gold clusters with more than 10⁴ atoms per cluster we were able to detect the quantized electronic structure with both techniques, STS and UPS. The analysis shows a quantitative agreement between the density of states extracted from the STS spectra by averaging over the cluster size-distribution, and UPS after a deconvolution of the dynamic final state effect, which leads to a systematic asymmetric broadening of all spectral features. These results for the model system of gold clusters on graphite highlight general features of the cluster–surface system and they demonstrate the consistent combination of STS and UPS for the study of clusters on surfaces.     

Relativistic electronic structure of cadmium(II) multidecker phthalocyanine compounds

Cadmium phthalocyanines (Pc) give rise to multilayered compounds, which may have potential application in material science. The Cd(II) single macrocycle (1) (C_4v), double decker [CdPc₂] (2) (D₄), triple decker [Cd₂Pc₃] (3) (D_4h) and quadruple decker [Cd₃Pc₄] (4) (D_4d), are already characterized experimentally. The electronic structures of the multidecker compounds were compared against the single macrocycle (1) which is used as benchmark. Relativistic electronic structure were carried out via DFT calculations using the two components ZORA Hamiltonian including both scalar and spin–orbit effects. Double point groups were used to take into account the inclusion of the spin–orbit coupling, and their group correlation is shown. The calculations show that the quadruple decker is the most reactive and behaves like a one-dimensional molecular metal.     

Copper doping of small gold cluster cations: influence on geometric and electronic structure

The effect of Cu doping on the properties of small gold cluster cations is investigated in a joint experimental and theoretical study. Temperature-dependent Ar tagging of the clusters serves as a structural probe and indicates no significant alteration of the geometry of Au(n) (+) (n = 1-16) upon Cu doping. Experimental cluster-argon bond dissociation energies are derived as a function of cluster size from equilibrium mass spectra and are in the 0.10-0.25 eV range. Near-UV and visible light photodissociation spectroscopy is employed in conjunction with time-dependent density functional theory calculations to study the electronic absorption spectra of Au(4-m)Cu(m) (+) (m = 0, 1, 2) and their Ar complexes in the 2.00-3.30 eV range and to assign their fragmentation pathways. The tetramers Au(4) (+), Au(4) (+)[middle dot]Ar, Au(3)Cu(+), and Au(3)Cu(+)[middle dot]Ar exhibit distinct optical absorption features revealing a pronounced shift of electronic excitations to larger photon energies upon substitution of Au by Cu atoms. The calculated electronic excitation spectra and an analysis of the character of the optical transitions provide detailed insight into the composition-dependent evolution of the electronic structure of the clusters.     

More on molecular electronic structure of metal phthalocyanines

Molecular orbitals of some of the 3d-transition metal phthalocyanines have been calculated. π-Electron charge densities over the atomic sites and the optical properties of the metal phthalocyanines have been calculated. The effect of the introduction of different metal atoms in the centre of the organic ring on the physical properties of the metal phthalocyanines has been discussed.     

Crystal and molecular structure of magnesium borohydride diglymate

Institute of New Chemical Problems, USSR Academy of Sciences. Translated from Zhurnal Strukturnoi Khimii, Vol. 31, No. 3, pp. 147–150, May–June, 1990.     

Effects of peripheral substituents and axial ligands on the electronic structure and properties of iron phthalocyanine

The effects of peripheral substituents and axial ligands on the electronic structure and properties of iron phthalocyanine, H(16)PcFe, have been investigated using a DFT method. Substitution by electron-withdrawing fluorinated groups alters the ground state of H(16)PcFe and gives rise to large changes in the ionization potentials and electron affinity. For the six-coordinate adducts with acetone, H(2)O, and pyridine, the axial coordination of two weak-field ligands leads to an intermediate-spin ground state, while the strong-field ligands make the system diamagnetic. The electronic configuration of a ligated iron phthalocyanine is determined mainly by the axial ligand-field strength but can also be affected by peripheral substituents. Axial ligands also exert an effect on ionization potentials and electron affinity and can, as observed experimentally, even change the site of oxidation/reduction.     

Bismuth triple-decker phthalocyanine: synthesis and structure

Triclinic crystals of bismuth(III) triple-decker phthalocyanine, Bi₂Pc₃, Pc=C₃₂H₁₆N₈²⁻, were grown directly by the reaction of Bi₂Se₃ with 1,2-dicyanobenzene at 220°C. The Bi₂Pc₃ molecule is centrosymmetric with the bismuth atoms located closer to the peripheral phthalocyaninato(2−) rings than to the central ring. Each bismuth(III) ion is connected by four N-isoindole atoms to the peripheral and by four N-isoindole to the central Pc ring with average distances of 2.333 and 2.747 Å, respectively. This indicates a stronger connection of Bi(III) to the peripheral saucer-shaped macrocyclic rings than to the central rings. The neighbouring phthalocyaninato(2−) moieties in the Bi₂Pc₃ molecule are separated by a distance of 3.101(5) Å. The central Pc ring is rotated by 36.4° with respect to the peripheral ones. Differences in Bi–N bond lengths are a result of interaction of the bismuth ion with peripheral and central rings as well as the repulsion forces between two bismuth ions in the same Bi₂Pc₃ molecule, which are separated by a distance of 3.839(2) Å. The crystal packing is characterized by a distance of 3.56 Å between Pc rings of neighbouring Bi₂Pc₃ molecules.     

Effect of molecule-substrate interaction on thin-film structures and molecular orientation of pentacene on silver and gold

Evaporated pentacene thin films with thicknesses from several nm to 150 nm on gold and silver substrates have been studied by ultraviolet photoelectron spectroscopy (UPS), near-edge X-ray absorption fine structure (NEXAFS), scanning tunneling microscopy (STM), and atomic force microscopy (AFM). It was found that pentacene thin-film structures, particularly their molecular orientations, are strongly influenced by the metal substrates. UPS measurements revealed a distinct change in the valence band structures of pentacene on Au compared to those on Ag, which is attributed to the different packing between adjacent molecules. Using NEXAFS, we observed 74+/-5 degrees and 46+/-5 degrees molecular tilt angles on Ag and Au, respectively, for all measured thicknesses. We propose that pentacene molecules stand up on the surface and form the "thin-film phase" structure on Ag. On Au, pentacene films grow in domains with molecules either lying flat or standing up on the substrate. Such a mixture of two crystalline phases leads to an average tilt angle of 46 degrees for the whole film and the change in valence band structures. STM and distance-voltage (z-V) spectroscopy studies confirm the existence of two crystalline phases on Au with different conducting properties. z-V spectra on the low conducting phase clearly indicate its nature as "thin-film phase".     

Adsorption-induced intramolecular dipole: correlating molecular conformation and interface electronic structure

The interfaces formed between pentacene (PEN) and perfluoropentacene (PFP) molecules and Cu(111) were studied using photoelectron spectroscopy, X-ray standing wave (XSW), and scanning tunneling microscopy measurements, in conjunction with theoretical modeling. The average carbon bonding distances for PEN and PFP differ strongly, that is, 2.34 A for PEN versus 2.98 A for PFP. An adsorption-induced nonplanar conformation of PFP is suggested by XSW (F atoms 0.1 A above the carbon plane), which causes an intramolecular dipole of approximately 0.5 D. These observations explain why the hole injection barriers at both molecule/metal interfaces are comparable (1.10 eV for PEN and 1.35 eV for PFP) whereas the molecular ionization energies differ significantly (5.00 eV for PEN and 5.85 eV for PFP). Our results show that the hypothesis of charge injection barrier tuning at organic/metal interfaces by adjusting the ionization energy of molecules is not always readily applicable.     

Projected quasiparticle theory for molecular electronic structure

We derive and implement symmetry-projected Hartree-Fock-Bogoliubov (HFB) equations and apply them to the molecular electronic structure problem. All symmetries (particle number, spin, spatial, and complex conjugation) are deliberately broken and restored in a self-consistent variation-after-projection approach. We show that the resulting method yields a comprehensive black-box treatment of static correlations with effective one-electron (mean-field) computational cost. The ensuing wave function is of multireference character and permeates the entire Hilbert space of the problem. The energy expression is different from regular HFB theory but remains a functional of an independent quasiparticle density matrix. All reduced density matrices are expressible as an integration of transition density matrices over a gauge grid. We present several proof-of-principle examples demonstrating the compelling power of projected quasiparticle theory for quantum chemistry.     

Electronic structure of brain: structure-activity relationships between electronic structure and neurotransmitters based on molecular hardness concept

In order to understand the relation between the electronic structure of neurotransmitters and the brain, a model of the brain based on absolute hardness (eta) and absolute electronegativity (chi) is described. It was found that the coordinate r(chi, eta) of electronic structures of neurotransmitters obtained using the parameters eta and chi can be graphically classified into three groups: catecholamine type (group I), gamma-aminobutanoic acid (GABA) type (group II), and acetylcholine (ACh) type (group III) in the eta-chi diagram. The results suggest that the brainstem and neocortex in the brain are chemically soft and hard, respectively, because they show that the myelinated nerve is chemically soft and the unmyelinated nerve is chemically hard. If one calculates the r(chi, eta) to understand which group a drug belongs to, one can predict the target receptors of the drug from the eta-chi diagram. Using eta-chi maps, one is then able to design medications like antidepressants, tranquilizers, and ACh agonists.     

Substituent effects on the molecular and electronic structure of β-lactams

Calculations have been made of the molecular geometry and electron distribution for each of eight unfused β-lactams and thirteen fused β-Iactams, using MINDO/3: electron distributions for unfused β-lactams have been determined by ab initio calculations. Systematic variations with substituent are found in d(C-N) and d(C-O), and in the net atomic charges. The geometrical and electronic effects of imposed non-planarity at nitrogen have been investigated for the parent β-Iactam, azetidin-2-one.     

Two-dimensional self-organization of phthalocyanine and porphyrin: dependence on the crystallographic orientation of Au

By immersing Au substrate into a benzene solution containing both cobalt(II) phthalocyanine (CoPc) and copper(II) tetraphenyl-21H,23H-porphine (CuTPP), a two-dimensional alternate bimolecular structure was formed on the reconstructed Au(100)-(hex) surface.