Synthesis of 4‐(trihalomethyl)dipyrimidin‐2‐ylamines from β‐alkoxy‐α,β‐unsaturated trihalomethyl ketones

The synthesis of a novel series of twelve 4‐(trihalomethyl)dipyrimidin‐2‐ylamines, from the cyclo‐condensation reaction of 4‐(trichloromethyl)‐2‐guanidinopyrimidine, with β‐alkoxyvinyl trihalomethyl ketones, of general formula: X₃C‐C(O)‐C(R²)=C(R¹)‐OR, where: X = F, Cl; R = Me, Et, ‐(CH₂)₂‐, ‐(CH₂)₃‐; R¹ = H, Me; R² = H, Me, ‐(CH₂)₂‐, ‐(CH₂)₃‐, is reported. The reactions were carried out in acetonitrile under reflux for 16 hours, leading to the dipyrimidin‐2‐ylamines in 65‐90% yield. Depending on the substituents of the vinyl ketone, tetrahydropyrimidines or aromatic pyrimidine rings were obtained from the cyclization reaction. When X = Cl, elimination of the trichloromethyl group was observed during the cyclization step. The structure of 4‐(trihalomethyl)dipyrimidin‐2‐ylamines was studied in detail by ¹H‐, ¹³C‐ and 2D‐nmr spectroscopy.     

A General Copper‐Mediated Nucleophilic 18F Fluorination of Arenes

Molecules labeled with fluorine‐18 are used as radiotracers for positron emission tomography. An important challenge is the labeling of arenes not amenable to aromatic nucleophilic substitution (S_NAr) with [¹⁸F]F^?. In the ideal case, the ¹⁸F fluorination of these substrates would be performed through reaction of [¹⁸F]KF with shelf‐stable readily available precursors using a broadly applicable method suitable for automation. Herein, we describe the realization of these requirements with the production of ¹⁸F arenes from pinacol‐derived aryl boronic esters (arylBPin) upon treatment with [¹⁸F]KF/K₂₂₂ and [Cu(OTf)₂(py)₄] (OTf=trifluoromethanesulfonate, py=pyridine). This method tolerates electron‐poor and electron‐rich arenes and various functional groups, and allows access to 6‐[¹⁸F]fluoro‐L ‐DOPA, 6‐[¹⁸F]fluoro‐m‐tyrosine, and the translocator protein (TSPO) PET ligand [¹⁸F]DAA1106.     

Expanding the Scope of 2′‐SCF3 Modified RNA

The 2′‐trifluoromethylthio (2′‐SCF₃) modification endows ribonucleic acids with exceptional properties and has attracted considerable interest as a reporter group for NMR spectroscopic applications. However, only modified pyrimidine nucleosides have been generated so far. Here, the syntheses of 2′‐SCF₃ adenosine and guanosine phosphoramidites of which the latter was obtained in highly efficient manner by an unconventional Boc‐protecting group strategy, are reported. RNA solid‐phase synthesis provided site‐specifically 2′‐SCF₃‐modified oligoribonucleotides that were investigated intensively. Their excellent behavior in ¹⁹F NMR spectroscopic probing of RNA ligand binding was exemplified for a noncovalent small molecule–RNA interaction. Moreover, comparably to the 2′‐SCF₃ pyrimidine nucleosides, the purine counterparts were also found to cause a significant thermodynamic destabilization when located in double helical regions. This property was considered beneficial for siRNA design under the aspect to minimize off‐target effects and their performance in silencing of the BASP1 gene was demonstrated.     

Synthesis and Properties of CF3(OCF3)CH‐Substituted Arenes and Alkenes†

A silver‐mediated oxidative trifluoromethylation of easily accessible α‐trifluoromethyl alcohols with TMSCF₃ was developed to access novel CF₃(OCF₃)CH‐containing compounds. Deprotonation of CF₃(OCF₃)CH‐substituted arenes afforded synthetically useful CF₃O‐substituted gem‐difluoroalkenes. Furthermore, evaluation of the lipophilicities (log P) indicated that CH(OCF₃)CF₃ is more lipophilic than the common fluorinated motifs such as CF₃, OCF₃, and SCF₃, thus rendering the CH(OCF₃)CF₃ motif appealing in drug discovery.     

Synthesis and Conformational Analysis of 1′‐ and 3′‐Substituted 2‐Deoxy‐2‐fluoro‐D‐ribofuranosyl Nucleosides

Convergent syntheses of the 9‐(3‐X‐2,3‐dideoxy‐2‐fluoro‐β‐D ‐ribofuranosyl)adenines 5 (X=N₃) and 7 (X=NH₂), as well as of their respective α‐anomers 6 and 8 , are described, using methyl 2‐azido‐5‐O‐benzoyl‐2,3‐dideoxy‐2‐fluoro‐β‐D ‐ribofuranoside ( 4 ) as glycosylating agent. Methyl 5‐O‐benzoyl‐2,3‐dideoxy‐2,3‐difluoro‐β‐D ‐ribofuranoside ( 12 ) was prepared starting from two precursors, and coupled with silylated N⁶‐benzoyladenine to afford, after deprotection, 2′,3′‐dideoxy‐2′,3′‐difluoroadenosine ( 13 ). Condensation of 1‐O‐acetyl‐3,5‐di‐O‐benzoyl‐2‐deoxy‐2‐fluoro‐β‐D ‐ribofuranose ( 14 ) with silylated N²‐palmitoylguanine gave, after chromatographic separation and deacylation, the N⁷‐β‐anomer 17 as the main product, along with 2′‐deoxy‐2′‐fluoroguanosine ( 15 ) and its N⁹‐α‐anomer 16 in a ratio of ca. 42 : 24 : 10. An in‐depth conformational analysis of a number of 2,3‐dideoxy‐2‐fluoro‐3‐X‐D ‐ribofuranosides (X=F, N₃, NH₂, H) as well as of purine and pyrimidine 2‐deoxy‐2‐fluoro‐D ‐ribofuranosyl nucleosides was performed using the PSEUROT (version 6.3) software in combination with NMR studies.     

Derivatives of Coenzyme F430 with a Covalently Attached α‐Axial Ligand. Part II

Coenzyme F430 pentamethyl ester 2 was partially hydrolyzed to a mixture of the five F430 tetramethyl esters 7 – 11 , which were separated by HPLC and identified by means of a full NMR characterization. The tetramethyl ester with a free COOH group at the side chain at C(3) of F430 was coupled to the N‐terminus of the peptidic spacer? ligand construct 12 selected and studied as described before. The UV/VIS and NMR spectra in CH₂Cl₂/3,3,3‐trifluoroethanol 6 : 1 show that the new derivative, the Ni^II(3³‐dehydroxy‐8³,12²,13³,18²‐tetra‐O‐methyl‐F430‐3³‐yl)‐L ‐prolyl‐L ‐prolyl‐N^π‐methyl‐L ‐histidine methyl ester ( 13 ), is an intramolecular, pentacoordinate, paramagnetic complex. In the same solvent system, the parent 3³,8³,12²,13³,18²‐penta‐O‐methyl‐F430 ( 2 ) is four coordinate and diamagnetic even in the presence of equimolar 1H‐imidazole. Protonation of the axially coordinating histidine residue of 13 gave the diamagnetic tetracoordinate base‐off form, which allowed us to establish the constitution of 13 by NMR.     

Synthesis and Reactivity of α‐Cumyl Bromodifluoromethanesulfenate: Application to the Radiosynthesis of [18F]ArylSCF3

A highly reactive electrophilic bromodifluoromethylthiolating reagent, α‐cumyl bromodifluoro‐methanesulfenate 1 , was prepared to allow for direct bromodifluoromethylthiolation of aryl boron reagents. This coupling reaction takes place under copper catalysis, and affords a large range of bromodifluoromethylthiolated arenes. These compounds are amenable to various transformations including halogen exchange with [¹⁸F]KF/K₂₂₂ , a process giving access to [¹⁸F]arylSCF₃ in two steps from the corresponding aryl boronic pinacol esters.     

15N NMR spectroscopy of 3‐substituted 5‐trichloromethyl‐1,2‐dimethyl‐1H‐pyrazolium chlorides

¹⁵N NMR data of a series of 3‐alkyl[aryl] substituted 5‐trichloromethyl‐1,2‐dimethyl‐1H‐pyrazolium chlorides (where the 3‐substituents are H, Me, Et, n‐Pr, n‐Bu, n‐Pe, n‐Hex, (CH₂)₅CO₂Et, CH₂Br, Ph and 4‐Br‐C₆H₄), are reported. The ¹⁵N substituent chemical shifts (SCS) parameters are determined and these data are compared with the ¹³C SCS values and data obtained by MO calculations. Copyright © 2002 John Wiley & Sons, Ltd.     

Differentiation of Boc‐protected α,δ‐/δ,α‐ and β,δ‐/δ,β‐hybrid peptide positional isomers by electrospray ionization tandem mass spectrometry

Two new series of Boc‐N‐α,δ‐/δ,α‐ and β,δ‐/δ,β‐hybrid peptides containing repeats of L ‐Ala‐δ⁵‐Caa/δ⁵‐Caa‐L ‐Ala and β³‐Caa‐δ⁵‐Caa/δ⁵‐Caa‐β³‐Caa (L ‐Ala = L ‐alanine, Caa = C‐linked carbo amino acid derived from D ‐xylose) have been differentiated by both positive and negative ion electrospray ionization (ESI) ion trap tandem mass spectrometry (MS/MS). MSⁿ spectra of protonated isomeric peptides produce characteristic fragmentation involving the peptide backbone, the Boc‐group, and the side chain. The dipeptide positional isomers are differentiated by the collision‐induced dissociation (CID) of the protonated peptides. The loss of 2‐methylprop‐1‐ene is more pronounced for Boc‐NH‐L ‐Ala‐δ‐Caa‐OCH₃ (1), whereas it is totally absent for its positional isomer Boc‐NH‐δ‐Caa‐L ‐Ala‐OCH₃ (7), instead it shows significant loss of t‐butanol. On the other hand, second isomeric pair shows significant loss of t‐butanol and loss of acetone for Boc‐NH‐δ‐Caa‐β‐Caa‐OCH₃ (18), whereas these are insignificant for its positional isomer Boc‐NH‐β‐Caa‐δ‐Caa‐OCH₃ (13). The tetra‐ and hexapeptide positional isomers also show significant differences in MS² and MS³ CID spectra. It is observed that ‘b’ ions are abundant when oxazolone structures are formed through five‐membered cyclic transition state and cyclization process for larger ‘b’ ions led to its insignificant abundance. However, b₁⁺ ion is formed in case of δ,α‐dipeptide that may have a six‐membered substituted piperidone ion structure. Furthermore, ESI negative ion MS/MS has also been found to be useful for differentiating these isomeric peptide acids. Thus, the results of MS/MS of pairs of di‐, tetra‐, and hexapeptide positional isomers provide peptide sequencing information and distinguish the positional isomers. Copyright © 2010 John Wiley & Sons, Ltd.     

Di‐Benzo‐18‐Crown‐6 and its Derivatives as Ligands in the Search for Ion Channels

Based on the previously reported one‐dimensional channel system [(H₂O)?(DB18C6)(μ₂‐H₂O)_2/2][(H₃O)?(DB18C6)(μ₂‐H₂O)_2/2]I₃ ( 2 ), which is realized by stacking of crown ether molecules (DB18C6 = dibenzo‐18‐crown‐6), other synthetic approaches towards ionic channels and their results are presented in this paper. The “cutting out” approach using DB18C6 as scissor, applied on NaI, yields the compound [Na?(DB18C6)I(THF)][Na?(DB18C6)(H₂O)₂]I(THF)₂(CHI₃) ( 1 ), in high yield. It is based on a neutral and a cationic complex of sodium by DB18C6 linked via H‐bonding to give short chain fragments. The anion exchange approach, trying to replace I₃^? by Br₃^? leads to the intercalation of a cation into a DB18C6 chain in [(Me₃NPh)(DB18C6)]Br₃ ( 3 ). A similar reaction as for the synthesis of 2 , but replacing iodide with bromine, yields finally a brominated DB18C6 ligand. In the presence of iron, the compound [(H₅O₂)?(Br₄‐DB18C6)₂][FeBr₄], 4 , is observed, in which a H₅O₂⁺‐cation is encapsuled by two brominated crown ether molecules. The absence of Fe and an excess of Br₂ leads to the complexation of H₃O⁺, and co‐crystallisation of bromine in [(H₃O)?(Br₄‐DB18C6)]Br₃Br₂ ( 5 ).     

One‐Pot Synthesis of 1,4‐Oxathiino[2,3‐b]quinoxalines or ‐pyrazines from 2,3‐Dichloroquinoxaline or ‐pyrazine and 1‐Aryl‐2‐bromoalkan‐1‐ones

An efficient one‐pot synthesis of novel heterocyclic derivatives, 2‐aryl‐1,4‐oxathiino[2,3‐b]quinoxalines or ‐pyrazines 5 , via the reaction of 2,3‐dichloroquinoxaline or ‐pyrazine with Na₂S?9 H₂O, and subsequent treatment of the resulting 2‐chloro‐3‐sodiosulfanylquinoxaline or ‐pyrazine 2 with 1‐aryl‐2‐bromo‐1‐alkanones and then NaH under mild conditions is described.     

Reactivity of Hydroxy‐ and Aquo(hydroxy)‐λ3‐iodane–Crown Ether Complexes

We have designed a series of hydroxy(aryl)‐λ³‐iodane–[18]crown‐6 complexes, prepared from the corresponding iodosylbenzene derivatives and superacids in the presence of [18]crown‐6, and have investigated their reactivities in aqueous media. These activated iodosylbenzene monomers are all non‐hygroscopic shelf‐storable reagents, but they maintain high oxidizing ability in water. The complexes are effective for the oxidation of phenols, sulfides, olefins, silyl enol ethers, and alkyl(trifluoro)borates under mild conditions. Furthermore, hydroxy‐λ³‐iodane–[18]crown‐6 complexes serve as efficient progenitors for the synthesis of diaryl‐, vinyl‐, and alkynyl‐λ³‐iodanes in water. Other less polar organic solvents, such as methanol, acetonitrile, and dichloromethane, are also usable in some cases.     

Pd‐NHC catalysed Carbonylative Suzuki coupling reaction and its application towards the synthesis of biologically active 3‐aroylquinolin‐4 (1H)‐one and acridone scaffolds

We have unfolded a convenient and mild protocol for the synthesis of diaryl ketones via Pd‐ NHC catalysed carbonylative Suzuki coupling reaction. Notably, this method offers advantages like no use of toxic CO gas, shorter reaction time, high yield, and broad substrate scope. Several sensitive functional groups (like‐COMe, ‐COOMe, ‐F, ‐Cl, ‐Br, ‐NH₂, ‐CN) are well tolerated in this reaction. In addition, we have also demonstrated a new efficient route for the synthesis of biologically active and pharmaceutically important 2‐substituted 3‐Aroylquinolin‐4(1H)‐ones and acridone scaffolds.     

(E)‐2‐(1,3‐Benzothiazol‐2‐yl)‐3‐(4‐fluorophenyl)acrylonitrile: a chain of π‐stacked hydrogen‐bonded rings

The title compound, C₁₆H₉FN₂S, crystallizes as a nonmerohedral twin with twin rotation about the reciprocal‐lattice vector [10]*. The molecules are nearly planar and the dihedral angle between the planes of the two aryl rings is only 4.4 (2)°. The molecules are linked by pairs of C—H...N hydrogen bonds to form cyclic centrosymmetric R₂²(18) dimers, which are linked into chains by an aromatic π–π stacking interaction. Comparisons are made with some related 3‐aryl‐2‐thienylacrylonitriles.     

The synthesis of novel crown ethers,part ix, 3‐phenyl chromenone‐crown ethers

3‐Phenyl‐ and 3‐(p‐methoxyphenyl)‐7,8‐dihydroxy and ‐6,7‐dihydroxychromenones were prepared from ethyl 3‐oxo‐2‐phenylpropanoate, ethyl 3‐oxo‐2‐(4‐methoxyphenyl)‐propanoate and the trihydroxy benzenes in H₂SO₄. 3‐Aryl‐7,8‐ and 3‐aryl‐6,7‐dihydroxy‐2H‐chromenones reacted with the bis‐dihalides of poly‐glycols in DMF/MeCO₃ to afford 12‐Crown‐4, 15‐Crown‐4 and 18‐Crown‐6‐chromenones. The products were identified with IR, 1H NMR, low and high resolution mass spectroscopy and elemental analysis. Some 1:1 cation association constants, K_b, of the 3‐phenyl chromenone crown ethers with Li⁺, Na⁺, K⁺ and Rb⁺ cations were studied by steady state emission fluorescence spectroscopy; K_b chromenone‐crown complexes displayed crown ether‐cation binding selectivity rules properly in acetonitrile.     

Substituent effects on the Bergman cyclization of (Z)‐1,5‐hexadiyne‐3‐enes: a systematic computational study

The effects of several substituents (? BH₂, ? BF₂, ? AlH₂, ? CH₃, ? C₆H₅, ? CN, ? COCH₃, ? CF₃, ? SiH₃, ? NH₂, ? NH₃⁺, ? NO₂, ? PH₂, ? OH, ? OH₂⁺, ? SH, ? F, ? Cl, ? Br) on the Bergman cyclization of (Z)‐1,5‐hexadiyne‐3‐ene (enediyne, 3 ) were investigated at the Becke–Lee–Yang–Parr (BLYP) density functional (DFT) level employing a 6‐31G* basis set. Some of the substituents (? NH₃⁺, ? NO₂, ? OH, ? OH₂⁺, ? F, ? Cl, ? Br) are able to lower the barrier (up to a minimum of 16.9 kcal mol^?1 for difluoro‐enediyne 7rr ) and the reaction enthalpy (the cyclization is predicted to be exergonic for ? OH₂⁺ and ? F) compared to the parent system giving rise to substituted 1,4‐dehydrobenzenes at physiological temperatures. © 2001 John Wiley & Sons, Inc. J Comput Chem 22: 1605–1614, 2001     

Decarboxylative C(sp3)−O Cross‐Coupling

Alkyl aryl ethers are an important class of compounds in medicinal and agricultural chemistry. Catalytic C(sp³)?O cross‐coupling of alkyl electrophiles with phenols is an unexplored disconnection strategy to the synthesis of alkyl aryl ethers, with the potential to overcome some of the major limitations of existing methods such as C(sp²)?O cross‐coupling and S_N2 reactions. Reported here is a tandem photoredox and copper catalysis to achieve decarboxylative C(sp³)?O coupling of alkyl N‐hydroxyphthalimide (NHPI) esters with phenols under mild reaction conditions. This method was used to synthesize a diverse set of alkyl aryl ethers using readily available alkyl carboxylic acids, including many natural products and drug molecules. Complementarity in scope and functional‐group tolerance to existing methods was demonstrated.     

3,4,6‐Tri‐O‐acetyl‐1,2‐O‐[1‐(exo‐ethoxy)ethylidene]‐β‐d‐mannopyranose 0.11‐hydrate

The title compound, C₁₆H₂₄O₁₀·0.11H₂O, is a key intermediate in the synthesis of 2‐deoxy‐2‐[¹⁸F]fluoro‐d ‐glucose (¹⁸F‐FDG), which is the most widely used molecular‐imaging probe for positron emission tomography (PET). The crystal structure has two independent molecules (A and B) in the asymmetric unit, with closely comparable geometries. The pyranose ring adopts a ⁴C₁ conformation [Cremer–Pople puckering parameters: Q = 0.553 (2) Å, θ = 16.2 (2)° and ϕ = 290.4 (8)° for molecule A, and Q = 0.529 (2) Å, θ =15.3 (3)° and ϕ = 268.2 (9)° for molecule B], and the dioxolane ring adopts an envelope conformation. The chiral centre in the dioxolane ring, introduced during the synthesis of the compound, has an R configuration, with the ethoxy group exo to the mannopyranose ring. The asymmetric unit also contains one water molecule with a refined site‐occupancy factor of 0.222 (8), which bridges between molecules A and B via O—H...O hydrogen bonds.     

Diversification of ortho‐Fused Cycloocta‐2,5‐dien‐1‐one Cores and Eight‐ to Six‐Ring Conversion by σ Bond C−C Cleavage

Sequential treatment of 2‐C₆H₄Br(CHO) with LiC≡CR¹ (R¹=SiMe₃, tBu), nBuLi, CuBr?SMe₂ and HC≡CCHClR² [R²=Ph, 4‐CF₃Ph, 3‐CNPh, 4‐(MeO₂C)Ph] at ?50 °C leads to formation of an intermediate carbanion (Z)‐1,2‐C₆H₄{C_A(=O)C≡C_BR¹}{CH=CH(CH^?)R²} ( 4 ). Low temperatures (?50 °C) favour attack at C_B leading to kinetic formation of 6,8‐bicycles containing non‐classical C‐carbanion enolates ( 5 ). Higher temperatures (?10 °C to ambient) and electron‐deficient R² favour retro σ‐bond C?C cleavage regenerating 4 , which subsequently closes on C_A providing 6,6‐bicyclic alkoxides ( 6 ). Computational modelling (CBS‐QB3) indicated that both pathways are viable and of similar energies. Reaction of 6 with H⁺ gave 1,2‐dihydronaphthalen‐1‐ols, or under dehydrating conditions, 2‐aryl‐1‐alkynylnaphthlenes. Enolates 5 react in situ with: H₂O, D₂O, I₂, allylbromide, S₂Me₂, CO₂ and lead to the expected C ‐E derivatives (E=H, D, I, allyl, SMe, CO₂H) in 49–64 % yield directly from intermediate 5 . The parents (E=H; R¹=SiMe₃, tBu; R²=Ph) are versatile starting materials for NaBH₄ and Grignard C=O additions, desilylation (when R¹=SiMe) and oxime formation. The latter allows formation of 6,9‐bicyclics via Beckmann rearrangement. The 6,8‐ring iodides are suitable Suzuki precursors for Pd‐catalysed C?C coupling (81–87 %), whereas the carboxylic acids readily form amides under T3P® conditions (71–95 %).     

3‐Deoxy‐β‐d‐ribo‐hexopyranose (3‐deoxy‐β‐d‐glucopyranose)

The β‐pyranose form, (III), of 3‐deoxy‐d ‐ribo‐hexose (3‐deoxy‐d ‐glucose), C₆H₁₂O₅, crystallizes from water at 298 K in a slightly distorted ⁴C₁ chair conformation. Structural analyses of (III), β‐d ‐glucopyranose, (IV), and 2‐deoxy‐β‐d ‐arabino‐hexopyranose (2‐deoxy‐β‐d ‐glucopyranose), (V), show significantly different C—O bond torsions involving the anomeric carbon, with the H—C—O—H torsion angle approaching an eclipsed conformation in (III) (−10.9°) compared with 32.8 and 32.5° in (IV) and (V), respectively. Ring carbon deoxygenation significantly affects the endo‐ and exocyclic C—C and C—O bond lengths throughout the pyranose ring, with longer bonds generally observed in the monodeoxygenated species (III) and (V) compared with (IV). These structural changes are attributed to differences in exocyclic C—O bond conformations and/or hydrogen‐bonding patterns superimposed on the direct (intrinsic) effect of monodeoxygenation. The exocyclic hydroxymethyl conformation in (III) (gt) differs from that observed in (IV) and (V) (gg).