Degradable Hybrid Materials Based on Cationic Acylhydrazone Dynamic Covalent Polymers Promote DNA Complexation through Multivalent Interactions

The design of smart nonviral vectors for gene delivery is of prime importance for the successful implementation of gene therapies. In particular, degradable analogues of macromolecules represent promising targets as they would combine the multivalent presentation of multiple binding units that is necessary for achieving effective complexation of therapeutic oligonucleotides with the controlled degradation of the vector that would in turn trigger drug release. Toward this end, we have designed and synthesized hybrid polyacylhydrazone‐based dynamic materials that combine bis‐functionalized cationic monomers with ethylene oxide containing monomers. Polymer formation was characterized by ¹H and DOSY NMR spectroscopy and was found to take place at high concentration, whereas macrocycles were predominantly formed at low concentration. HPLC monitoring of solutions of these materials in aqueous buffers at pH values ranging from 5.0 to 7.0 revealed their acid‐catalyzed degradation. An ethidium bromide displacement assay and gel electrophoresis clearly demonstrated that, despite being dynamic, these materials are capable of effectively complexing dsDNA in aqueous buffer and biological serum at N/P ratios comparable to polyethyleneimine polymers. The self‐assembly of dynamic covalent polymers through the incorporation of a reversible covalent bond within their main chain is therefore a promising strategy for generating degradable materials that are capable of establishing multivalent interactions and effectively complexing dsDNA in biological media.     

Dynamic Formation of Hybrid Peptidic Capsules by Chiral Self‐Sorting and Self‐Assembly

Owing to their versatility and biocompatibility, peptide‐based self‐assembled structures constitute valuable targets for complex functional designs. It is now shown that artificial capsules based on β‐barrel binding motifs can be obtained by means of dynamic covalent chemistry (DCC) and self‐assembly. Short peptides (up to tetrapeptides) are reversibly attached to resorcinarene scaffolds. Peptidic capsules are thus selectively formed in either a heterochiral or a homochiral way by simultaneous and spontaneous processes, involving chiral sorting, tautomerization, diastereoselective induction of inherent chirality, and chiral self‐assembly. Self‐assembly is shown to direct the regioselectivity of reversible chemical reactions. It is also responsible for shifting the tautomeric equilibrium for one of the homochiral capsules. Two different tautomers (keto‐enamine hemisphere and enol‐imine hemisphere) are observed in this capsule, allowing the structure to adapt for self‐assembly.     

Aqueous Anion Receptors through Reduction of Subcomponent Self‐Assembled Structures

To prepare new functional covalent architectures that are difficult to synthesize using conventional organic methods, we developed a strategy that employs metal–organic assemblies as precursors, which are then reduced and demetalated. The host–guest chemistry of the larger receptor thus prepared was studied using NMR spectroscopy and fluorescence experiments. This host was observed to strongly bind aromatic polyanions in water, including the fluorescent dye molecule pyranine with nanomolar affinity, thus allowing for the design of an indicator‐displacement assay.     

Self‐assembled organic nanotubes: Toward attoliter chemistry

Diverse chemical functionalization of the inner and outer surfaces of the nanotubes enables us to sense and visualize the encapsulation and transport behavior of biomacromolecular guests. The event occurs specifically in attoliter volume nanospace inside the hollow cylinder of the nanotubes. Comparison of the organic nanotube history with that of well‐known carbon nanotubes and a variety of molecular building blocks as tube‐forming compounds were first introduced. Asymmetric organic nanotubes with different inner and outer surfaces were discussed in terms of molecular design, immobilization of functional moieties, and molecular packing. Finally, the practical examples of the organic nanotubes as a nanocontainer, nanochannel, and nanopipette were also described to feature the concept of “attoliter chemistry.” © 2008 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 46: 2601–2611, 2008     

Fluorescent Dynamic Covalent Polymers for DNA Complexation and Templated Assembly

Dynamic covalent polymers (DCPs) offer opportunities as adaptive materials of particular interest for targeting, sensing and delivery of biological molecules. In this view, combining cationic units and fluorescent units along DCP chains is attractive for achieving optical probes for the recognition and delivery of nucleic acids. Here, we report on the design of acylhydrazone-based DCPs combining cationic arginine units with π-conjugated fluorescent moieties based on thiophene-ethynyl-fluorene cores. Two types of fluorescent building blocks bearing neutral or cationic side groups on the fluorene moiety are considered in order to assess the role of the number of cationic units on complexation with DNA. The (chir)optical properties of the building blocks, the DCPs, and their complexes with several types of DNA are explored, providing details on the formation of supramolecular complexes and on their stability in aqueous solutions. The DNA-templated formation of DCPs is demonstrated, which provides new perspectives on the assembly of fluorescent DCP based on the nucleic acid structure.     

Low‐Molecular‐Weight Dendrons for DNA Binding and Release by Reduction‐Triggered Degradation of Multivalent Interactions

Losing the grip : The synthesis of multivalent low‐molecular‐weight dendrons with lysine branching units coupled to disulfide‐linked spermine surface groups is described. It is furthermore demonstrated that the dendrons bind DNA with good affinity (see image), but are also able to release the DNA in a reductive environment.

     

Multivalency by Self‐Assembly: Binding of Concanavalin A to Metallosupramolecular Architectures Decorated with Multiple Carbohydrate Groups

Multiplication of functional units through self‐assembly is a powerful way to new properties and functions. In particular, self‐organization of components decorated with recognition groups leads to multivalent entities, amenable to strong and selective binding with multivalent targets, such as protein receptors. Here we describe an efficient, supramolecular, one‐pot valency multiplication process proceeding through self‐organization of monovalent components into well‐defined, grid‐shaped [2×2] tetranuclear complexes bearing eight sugar residues for multivalent interaction with the tetrameric lectin, concanavalin A (Con A). The grids are stable in water under physiological pH at a relatively high concentration, but dissociate readily at slightly more acidic pH or upon dilution below a certain threshold, in a type of on–off behavior. The carbohydrate‐decorated grids interact strongly and selectively with Con A forming triply supramolecular bio‐hybrid polymeric networks, which lead to a highly specific phase‐separation and quasi‐quantitative precipitation of Con A out of solution. Dramatic effects of valency number on agglutination properties were demonstrated by comparison of grids with divalent carbohydrates of covalent and non‐covalent (L ‐shaped, mononuclear zinc complex) scaffolds. The results presented here provide prototypical illustration of the power of multivalency generation by self‐assembly leading to defined arrays of functional groups and binding patterns.     

Diketopyrrolopyrrole J‐Aggregates Formed by Self‐Organization with DNA

Bis(2‐thienyl)diketopyrrolopyrrole with two Zn^II‐cyclens (ZnCyc‐DPP) was designed and synthesized to evaluate the selective binding of Zn^II‐cyclen with thymine base in single‐strand DNA as a tool for the construction of a highly ordered multichromophore system on DNAs. Through UV/Vis titrations, gel filtration chromatography, and circular dichroism spectroscopy, ZnCyc‐DPP formed J‐type DPP aggregates with oligo‐dT_n DNAs. The DPP aggregates absorbed on a gold electrode exhibited good photocurrent responses. The present results show that binding Zn^II‐cyclen–chromophore conjugates and thymine bases together is a powerful tool for preparing DNA‐templated multichromophoric systems with specific functions.     

Complexation and Catenation in Aqueous Media Using a Self‐Assembled PdII Metallacyclic Receptor

A M₂L₂ rectangular‐shaped metallacycle, obtained by metal‐directed self‐assembly of a 2‐(pyridin‐4‐ylmethyl)‐2,7‐diazapyrenium salt and [(en)Pd (NO₃)₂] (en=ethylenediamine), has been investigated as a molecular receptor for a wide range of aromatic substrates in water. Complexation and catenation of the receptor with selected mono‐ and polycyclic aromatic substrates produced 1:1 inclusion complexes and [2]catenanes in a highly efficient fashion, as determined by NMR and UV/Vis spectroscopic techniques, as well as single‐crystal X‐ray crystallography. Furthermore, the thermodynamic and kinetic features of the complexation processes have been analyzed for selected model guests.     

Nanofibers Self‐assembled from Structural Complementary Borono‐decapeptides

A series of structural complementary decapeptides with phenyl boronic acid tails or borono‐decapeptides (BPs) were designed and synthesized for supramolecular self‐assembly. After dissolving these borono‐decapeptides in deionized (DI) water, well‐defined nanofibers were formed in BP1 (B(OH)₂VEKELVKEKL‐OH) and BP3 (B(OH)₂AELELARARL‐OH). It was found that the self‐assembled borono‐decapeptide BP1 and BP3 have a parallel β‐sheet conformation in the formed nanofibers. The strategy demonstrated here shows a great prospect in preparation of well‐ordered nanofibers via rationally designing the molecular structures of peptides.

     

Adsorption‐Driven Self‐Sorting of Dynamic Imine Libraries

Differences in adsorption among the components of complex mixtures play a role in separations, surface‐based sensing, and heterogeneous catalysis, and have been implicated in theories of the origin of life. Herein, we consider mixtures of imines and we show that if such complex mixtures are also dynamic—that is, if their components equilibrate among themselves—then they can dramatically simplify in composition during the course of column chromatography. As they travel down the column, imines continuously trade their aldehyde and amine constituents, favoring the formation of molecules with extremes of polarity at the expense of species with intermediate polarities. Iterative application of this principle leads to simplification of imine libraries containing up to 16 members into 4 major products.     

Shape‐Persistent Organic Cage Compounds by Dynamic Covalent Bond Formation

One area of supramolecular chemistry involves the synthesis of discrete three‐dimensional molecules or supramolecular aggregates through the coordination of metals. This field also concerns the chemistry of supramolecular cage compounds constructed through the use of such coordination bonds. To date, there exists a broad variety of supramolecular cage compounds; however, analogous organic cage compounds formed with only covalent bonds are relatively rare. Recent progress in this field can be attributed to important advances, not least the application of dynamic covalent chemistry. This concept makes it possible to start from readily available precursors, and in general allows the synthesis of cage compounds in fewer steps and usually higher yields.     

Boronic Acids in Molecular Self‐Assembly

The reversibility of boronic acid and diol interaction makes it an ideal candidate for the design of self‐assembled molecular structures. Reversibility is required to ensure that the thermodynamically most stable structure is formed. Reversibility also ensures that any errors produced during the assembly process are not permanent.     

Unexpected Self‐Sorting Self‐Assembly Formation of a [4:4] Sulfate:Ligand Cage from a Preorganized Tripodal Urea Ligand

The design and synthesis of tripodal ligands 1 – 3 based upon the N‐methyl‐1,3,5‐benzenetricarboxamide platform appended with three aryl urea arms is reported. This ligand platform gives rise to highly preorganized structures and is ideally suited for binding SO₄^2? and H₂PO₄^? ions through multiple hydrogen‐bonding interactions. The solid‐state crystal structures of 1 – 3 with SO₄^2? show the encapsulation of a single anion within a cage structure, whereas the crystal structure of 1 with H₂PO₄^? showed that two anions are encapsulated. We further demonstrate that ligand 4 , based on the same platform but consisting of two bis‐urea moieties and a single ammonium moiety, also recognizes SO₄^2? to form a self‐assembled capsule with [4:4] SO₄^2?: 4 stoichiometry in which the anions are clustered within a cavity formed by the four ligands. This is the first example of a self‐sorting self‐assembled capsule where four tetrahedrally arranged SO₄^2? ions are embedded within a hydrophobic cavity.     

Self-assembled multivalency: dynamic ligand arrays for high-affinity binding

Multivalency is a powerful strategy for achieving high-affinity molecular recognition in biological systems. Recently, attention has begun to focus on using self-assembly rather than covalent scaffold synthesis to organize multiple ligands. This approach has a number of advantages, including ease of synthesis/assembly, tunability of nanostructure morphology and ligands, potential to incorporate multiple active units, and the responsive nature of self-assembly. We suggest that self-assembled multivalency is a strategy of fundamental importance in the design of synthetic nanosystems to intervene in biological pathways and has potential applications in nanomedicine.