Crystal Structures of 6-methyl-3-phenylsulfonylchroman-4-one and trans -6-methyl-3-phenylsulfonylchroman-4-ol

The crystal structures of (i) CH₃(C₉H₆O₂)SO₂C₆H₅ and (ii) CH₃(C₈H₈O₂)SO₂−C₆H₅ have been determined by X-ray diffraction. (i) crystallizes in the monoclinic space groupP2₁/c with unit cell parametersa=8.814(1)?,b=10.310(1)?,c=15.841(4)?, β=98.17(1)^o, andZ=4, and (ii) crystallizes in the orthorhombic space groupP2₁2₁2₁ with unit cell parametersa=6.206(1)?,b=11.752(5)?,c=19.865(3)?, andZ=4. The pyran ring in both of them is in the distorted half-chair conformation with differeing degrees of distortion from the ideal.     

Crystal Structures of 6-methyl-3-phenylsulfonylchroman-4-one andtrans-6-methyl-3-phenylsulfonylchroman-4-ol

The crystal structures of (i) CH₃(C₉H₆O₂)SO₂C₆H₅ and (ii) CH₃(C₈H₈O₂)SO₂?C₆H₅ have been determined by X-ray diffraction. (i) crystallizes in the monoclinic space groupP2₁/c with unit cell parametersa=8.814(1)Å,b=10.310(1)Å,c=15.841(4)Å, β=98.17(1)^o, andZ=4, and (ii) crystallizes in the orthorhombic space groupP2₁2₁2₁ with unit cell parametersa=6.206(1)Å,b=11.752(5)Å,c=19.865(3)Å, andZ=4. The pyran ring in both of them is in the distorted half-chair conformation with differeing degrees of distortion from the ideal.     

Crystal structures of two azo compounds, 2-methyl-2-(4-bromphenylazo)-1,3-indandione and 2-methyl-2-(4-ethoxyphenylazo)-1,3-indandione

In the two title compounds, the 2-methyl-1,3-dioxoindan-2-yl and 4-(brom; ethoxy) phenyl groups aretrans with respect to one another. The phenyl ring and the azo group are not coplanar in the two molecules. The five-membered rings of the two compounds adopt an envelope conformation. The crystallographic parameters are as follows: 2-Methyl-2-(4-bromphenylazo)-1,3-indandione (I): monoclinic, P2₁/a witha=8.098(2),b=14.442(2),c=12.554(1)Å, =100.55(2)^o, andD _calc=1.58 g cm^–3 forZ=4; 2-methyl-2-(4-ethoxyphenylazo)-1, 3-indandione (II): monoclinic, P2₁/a witha=8.258(2),b=14.449(1),c=13.559(2)Å, =101.19(1)^o, andD _calc=1.29 g cm^–3 forZ=4.     

Crystal Structures of N-(4-butyryl-3-hydroxyphenyl)acetamide Monohydrate and 4-(4-Chlorophenyl)-2-methyl-4-oxobutanoic Acid: Possibilities of Yang Photocyclization

Abstract  

N-(4-butyryl-3-hydroxyphenyl)acetamide monohydrate, (I), and 4-(4-chlorophenyl)-2-methyl-4-oxobutanoic acid, (II), are photochemically inert, which is a result of their conformation. The geometrical parameters describing the molecular conformation and possibilities of the Yang photocyclization in crystals have been calculated and discussed. Compound (I) forms double ribbons along the a axis, stabilized by hydrogen bonds and π⋯π interactions. Compound (II) forms dimers. (I): triclinic, space group \textP[`1] {\text{P}}\bar{1} , a = 6.9291(12) ?, b = 7.5736(16) ?, c = 13.0528(18) ?, α = 79.643(17)°, β = 85.818(15)°, γ = 63.97(2)°, Z = 2. (II): monoclinic, space group P2₁/c, a = 11.904(2) ?, b = 9.6508(12) ?, c = 10.666(2) ?, β = 110.64(2)°, Z = 4.     

2-甲基4-(4-(吡啶-3-乙炔基)苯基)-3-丁炔-2-醇的合成及晶体结构

由1,4-二碘代苯出发,经过两步Sonogashira偶联反应合成了标题配合物2-甲基4.(4-(吡啶-3-乙炔基)苯基)-3-丁炔-2-醇.通过1H NMR、13C NMR核磁共振、Ⅹ-射线单晶衍射等手段对化合物的结构进行了表征.结果表明,该化合物晶体属于单斜晶系,空间群为P21/c.晶体学参数:a=3.3321 (4) nm,b=1.00539(11) nm,c=0.89158(10) nm,α =90.00°,β=92.442(2)°,y=90.00°,V=2984.2(6) nm3,Z =4.     

Crystal and molecular structure of 3-mesityl-4-methyl-5-(3′-mesityl-5′-methyl-Δ2′-isoxazolin-4′-yl)-Δ2-isoxazoline,C26H32N2O2

The crystal structure of the title compound, C₂₆H₃₂N₂O₂, has been determined by three-dimensional X-ray diffraction methods. The crystals are monoclinic:P2₁/c,a=13.338(9),b=17.364(12),c=10.320(8) Å,=99.84(6)°,Z=4. The structure was solved by direct methods, and refined to anR value of 0.069 for 2258 observed reflections. Bond lengths and angles have normal values. The isoxazoline rings are in an envelope conformation and their best planes are twisted by 77.8°; the mesityl groups are inclined to the heterocyclic rings (63.3 and 69.0°). No significant conjugation is evident within the molecule.     

Crystal and molecular structure of 2-chloro-4-methyl-6-[[(4-)2,2,6,6,-tetramethylpiperidinyl]amino]-3-pyridinecarbonitrile hydrochloride

The compound C₁₆H₂₄N₄Cl₂ crystallizes in the monoclinic space groupP2 ₁/c witha=16.299(2),b=7.801(1),c=14.780(2) Å,=109.89(1)° andZ=4. The structure was determined by direct methods, and refined by full-matrix least squares toR=0.046 andR _w=0.050 for 2309 reflections. The resulting structure permitted the determination of the main direction of substitution during the synthesis of this compound, and correction of a previously postulated formulae of the dyes formed. The influence of salt formation on the protonation of the N atom and on the formation of hydrogen bonds is analyzed. The influence of substituents on the geometry of pyridine and piperidine ring is discussed.     

Synthesis and Crystal Structures of 4-(3-Nitropyridin-2-ylamino)phenol and 4-(3-Aminopyridin-2-ylamino)phenol

Abstract  

The title compounds, 4-(3-nitropyridin-2-ylamino)phenol (I) and 4-(3-aminopyridin-2-ylamino)phenol (II), are two intermediates for the synthesis of a potential antitumor agent ABT-751. The reaction of 4-aminophenol with 2-chloro-3-nitropyridine yielded I which was converted into II by reduction. Instead of the Pd/C catalytic hydrogenation described in many literature, reduction with cheap sodium sulfide in aqueous media was utilized for shorting the reaction time and simplifying the operation. The crystal structures of the resultant compounds were determined by single-crystal X-ray diffraction. The compound I is crystallized in P2₁/c space group of monoclinic system, with a = 11.5236(19) ?, b = 8.7389(17) ?, c = 10.684(3) ? and α = 90.00°, β = 107.76(3)°, γ = 90.00°. The compound II is crystallized in Cc space group of monoclinic system, with a = 10.688(2) ?, b = 14.2181(18) ?, c = 7.9836(15) ? and α = 90.00°, β = 125.801(7)°, γ = 90.00°. In both crystal structures, the intermolecular N–H–O and O–H–N hydrogen bonds link the molecules, which effectively stabilize the structures.     

X-ray diffraction studies of 5-functionalized substituted 1,2,3,4-tetrahydropyrimidin-2-ones(thiones): I. Molecular structures of 5-acetyl-4-ethyl-6-methyl-1,2,3,4-tetrahydropyrimidine-2-thione, 5-acetyl-6-methyl-4-(4-methylphenyl)-1,2,3,4-tetrahydropyrimidine-2-thione, and 5-acetyl-4-(4-methoxyphenyl)-6-methyl-1,2,3,4-tetrahydropyrimidin-2-one

The structures of three 5-acetyl-1,2,3,4-tetrahydropyrimidin-2-ones(thiones), namely, 5-acetyl-4-ethyl-6-methyl-1,2,3,4-tetrahydropyrimidine-2-thione, 5-acetyl-6-methyl-4-(4-methylphenyl)-1,2,3,4-tetrahy-dropyrimidine-2-thione, and 5-acetyl-4-(4-methoxyphenyl)-6-methyl-1,2,3,4-tetrahydropyrimidin-2-one, which are potential medicinals, are studied by X-ray diffraction. The conformational features of the molecules studied are analyzed. For these compounds, the dependence of the conformation of the tetrahydropyrimidine ring on the orientation of the substituent at the C(4) atom with respect to the heterocycle is found.     

Synthesis, crystal structure, and molecular modeling (AM1) of Methyl 6-chloro-4-(2-chlorophenyl)-5-formyl-2-methyl-1, 4-dihydropyridine-3-carboxylate

The synthesis and structural characterization of Methyl 6-chloro-4-(2-chlorophenyl)-5-formyl-2-methyl-1,4-dihydropyridine-3-carboxylate is described. The structure was refined to R₁ = 0.0470 for 2665 reflections (with I > 2(I)). Crystal data: C₁₅H₁₃C₁₂NO₃, monoclinic,space group P2₁/c, a = 11.163(9), b = 14.484(8), c = 9.422(7) Å, V = 1512.9(19) ų, Z = 4. The results of crystallographic and molecular modeling (AM1) were compared. The Cl atom attached to the phenyl group has two possible orientations, having 75% (sp) and 25% (ap) occupancy, respectively. The molecules in the crystal are held together by means of intermolecular hydrogen bonds of the type N=H...O and by C=H...O interactions.     

Crystallographic and conformational analysis of 2-methyl-3-(2-nitro-phenyl)-4-phenyl-[1,2,4]oxadiazolidin-5-one

Molecular and crystal structure of 2-methyl-3-(2-nitro-phenyl)-4-phenyl-[1,2,4]oxadiazolidin-5-one, C₁₅H₁₃N₃O₄, have been determined by single crystal X-ray diffraction study. The title compound is monoclinic, with a = 10.0313(8) Å, b = 9.0372(5) Å, c = 15.5964(14) Å, β = 96.926(7)^∘, Z = 4, D_x = 1.42 g/cm³, μ (Mo-K_α) = 0.105 mm⁻¹, and space group is P 2₁/c. The structure was solved by direct methods and refined to a final R = 0.036 for 1894 reflections with I > 4σ (I). The crystal structure is stabilized by C–H⋅sO type inter-molecular, C–H⋅sN and C–H⋅sO type intra-molecular, π–π stacking and edge to face (C–H⋅s π-ring) interactions. To enlighten conformational flexibility of the title molecule, selected two torsion angles are varied from −180^∘ to +180^∘ in every 10^∘ separetely and then molecular energy profile is calculated and construed.     

Crystal Structure and Molecular Conformational Studies of Allyl 6-Amino-5-cyano-4-(4-fluorophenyl)-2-methyl-4H-pyran-3-carboxylate

Crystallography Reports - The allyl 6-amino-5-cyano-4-(4-fluorophenyl)-2-methyl-4H-pyran-3-carboxylate, C17H15FN2O3, compound adopts a triclinic crystal system with the sp. gr. $$P\bar {1}$$, Z =...     

Molecular and crystal structures of chiral 2-(4-phenylbenzylidene)-3-methyl-6-isopropylcyclohexanone 6-bromo derivative

The molecular and crystal structures of chiral 3R, 6S-2-(4-phenylbenzylidene)-3-methyl-6-bromo-6-isopropylcyclohexanone C₂₃H₂₅BrO (Ia) are determined by X-ray diffraction. Crystals Ia are monoclinic, a = 11.005(4) Å, b = 12.229(4) Å, c = 14.376(5) Å, β = 91.37(1)°, Z = 4, and space group P2₁. The geometric parameters of two crystallographically independent molecules are close to each other in magnitude. The cyclohexanone ring adopts a chair-type conformation with an equatorial isopropyl substituent and an axial orientation of the methyl group and the C-Br bond. The 3,6-alkyl groups are in the cis position with respect to the cyclohexanone ring. It is demonstrated that, in the series of 6-bromo substituted compounds, as in their analogues unsubstituted for bromine in the 6-position, the maximum flattening of the cinnamoyl fragment O=C-C=C-C₆H₄ X is observed in the structure with X = C₆H₅.     

Molecular and crystal structure of 1-methyl-3-[(3-methylthio-4-quinolyl)thio]-1,4-dihydro-4-oxo-quinoline

The crystal structure of 1-methyl-3-[(3-methylthio-4-quinolyl)thio]-1,4-dihydro-4-oxo-quinoline has been determined. The molecule of the title compound adopts a conformation that is skew, but with a tendency to a twist. Both ortho-substituents, the carbonyl and methylthio groups, are in a cis orientation to the central C_ar-S-C_ar bridge. This mutual orientation of substituents follows from the SO and SS attractive interactions. Several short intramolecular contacts between N-methyl and neighboring protons as well as between S-methyl and neighboring protons explain the presence of the strong NOE enhancement in the NMR spectrum.Part XVII in the Series of Azinyl Sulfides.     

Crystal and molecular structure of 1-(p-nitrophenyl)-2-acetylamino-3-brom-propen-2-on-1, C11H9BrN2O4

M_r = 313.11, orthorhombic space group Pbca, a = 8.165(1), b = 9.491(2), c = 32.207(5) Å V = 2496(1) ų, D_X = 1.667 Mgm⁻³, Z = 8, F(000) = 1248, λ(MoKα) = 0.71069 Å, μ = 32.7 mm⁻¹. The crystal structure was determined by direct methods and refined by least-squares procedure to the discrepancy factor R = 0.065. Positions of hydrogen atoms were calculated. The structure determined by x-ray analysis confirms the chemical results.     

Structure of 2-{2-[3-methyl-3-(2,4,6-trimethylphenyl) cyclobutyl]-2-oxoethyl}isoindole-1,3-dione

2-{2-[3-Methyl-3-(2,4,6-trimethylphenyl)cyclobutyl]-2-oxoethyl}isoindole-1,3-dione (C₂₄ H₂₅NO₃) was synthesized, and its crystal structure was determined by X-ray crystallographic techniques. The compound crystallizes in the triclinic space group P-1, with unit cell parameters: a = 14.109(9) Å, b = 14.130(8) Å, c = 12.152(6) Å, = 105.62(5)°, = 113.75(4)°, = 98.78(5)°, V = 2039.8(19) ų, D _c= 1.223 g/cm³, and Z = 4. The crystal structure has two crystallographically independent molecules, I and II. These molecules are held together by weak intermolecular C—H···O interactions, forming a continuous chain. The dihedral angles between the N-substituted phthalimide moiety and cyclobutane ring in molecules I and II are 60.37(14) and 68.18(18)°, respectively.     

Structure of the OD-disordered 2-Hydroxy-4-methoxy-2H-1,4-benzoxazin-3-one,C9H9NO4

The X-ray diagrams of the title compound show pronounced maxima on diffuse streaks parallel c* and unusual extinctions. The intensity distribution is compatible with the assumption of a disordered (OD) structure consisting of one kind of layers. The structure contains ordered domains with the crystal data: monoelinic, space group P 2₁/a, lattice parameters a = 15.910(5), b = 8.365(4), c = 15.747(5) Å, β = 120.34(6)°, V = 1809 ų, Z = 8, M_r = 195.1, D_x = 1.432 Mg m⁻³, μ(MoKα) = 0.36 mm⁻¹, final R = 0.129 for 859 observed reflections. The asymmetric unit is constituted of two crystallographically independent molecules related by a pseudo glide plane. The crystal used for X-ray analysis proved to be twinned.     

Synthesis and structures of Na4P2Se6, Cs3PSe4, and Rb4P2Se9

Na₄P₂Se₆ (1) crystallizes in the orthorhombic space group Cmca (No. 64) with a = 11.836(3) ?, b = 13.311(4) ?, c = 8.061(2) ?, V = 1270.0(6) ?³, Z = 4, and, D _c = 3.283 g/cm³. Na₄P₂Se₆ belongs to the family of compounds with the general formula where A = Na⁺ and Q = Se²⁻. The crystal structure consists of isolated ethane-like P₂Se anions surrounded by Na⁺ cations. Cs₃PSe₄ (2) crystallizes in the orthorhombic space group Pnma (No. 62) with a = 10.0146(9) ?, b = 11.9899(10) ?, c = 9.9286(9) ?, V = 1192.17(18) ?3, Z = 4, and, Dc = 4.154 g/cm³. Cs₃PSe₄ belongs to the family of compounds with the general formula [(A^{+ x} ) _{z / x} (P ^v Q₄)^{− z} ] where A = Cs⁺ and Q = Se²⁻. The crystal structure consists of isolated methane-like PSe anions surrounded by Cs⁺ cations. Rb₄P₂Se₉ (3) crystallizes in the monoclinic space group C2/c (No. 15), a = 9.725(2) ?, b = 10.468(3) ?, c = 19.155(5) ?, β = 93.627(5)°, V = 1946.1(8) ?³, Z = 4, D _c = 3.804 g/cm³. Rb₄P₂Se₉ belongs to the family of compounds with the general formula [(A^{+ x} )_{(2 z −2)/ x} (Q₃PQ′—Q″—Q′PQ₃)^{−(2 z −2)}] where A = Cs⁺ and Q = Se²⁻, Q′ = Se¹⁻, Q″ = Se⁰. The crystal structure consists of isolated P₂Se anions surrounded by Rb⁺ cations.     

Synthesis,Characterization and Crystal Structure of 1-Phenyl-3-methyl-4-(salicylidene hydrazide)-phenylethylene-pyrazolone-5

Abstract A new compound 1-phenyl-3-methyl-4-(salicylidene hydrazide)-phenylethylene-pyrazolone-5 (PMPeP-SHZ) has been synthesized and characterized by elemental analysis, IR spectrum, MS and single crystal X-ray diffraction. The compound crystallizes in a monoclinic, space group P2(1)/c with cell parameters: a = 10.8275(19) ?, b = 24.689(4) ?, c = 9.7167(16) ? and β = 95.127(4)°, Z = 4, S = 1.097. In the crystal structure, the compound presents in the diketo form. The structure exhibits both intra- and intermolecular hydrogen bonding and the molecules are interlinked through hydrogen bonds forming an infinite 2D network. The fluorescent result shows blue emission at room temperature in solid state. Graphical Abstract Synthesis, Characterization and Crystal Structure of 1-Phenyl-3- methyl-4-(salicylidene hydrazide)-phenylethylene-pyrazolone-5 Li Zhang, Guan-Cheng Xu, Lang Liu, Guang-Fei Liu, and Dian-Zeng Jia* Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Molecular structure,DFT studies,Hirshfeld surface analysis,energy frameworks,and molecular docking studies of novel (E)-1-(4-chlorophenyl)-5-methyl-N′-((3-methyl-5-phenoxy-1-phenyl-1H-pyrazol-4-yl) methylene)-1H-1, 2, 3-triazole-4-carbohydrazide

Abstract

The synthesis of the compound and its crystal structure having a monoclinic crystal system has been reported earlier. Optimized bond lengths and angles are showing good agreements with experimental data using DFT/B3LYP method. Energy of highest occupied molecular orbital and lowest unoccupied molecular orbital has been predicted to analyze the stabilities of compound. Crystal explorer 17.5 helps to visualize intermolecular interactions and its contributions to each interaction within molecule. The preeminence of dispersion energy component over the other components was established by interaction energy calculations and lattice energy framework analysis using same software. The molecular docking study was performed for molecule using AutoDock software.