肾上腺素与胞嘧啶相互作用的密度泛函理论研究

采用密度泛函理论（DFT）B3LYP方法和6-311＋G（d,p）基组对肾上腺素-胞嘧啶复合物进行结构优化和频率计算,得到15种稳定的复合物.研究发现,所有的复合物进行基组重叠误差（BSSE）校正后的相互作用能为-11.43^-48.96kJ/mol,符合氢键能量范围,相互作用能主要由氢键所贡献.结构和振动频率分析显示,氢键的形成使相应O（N）—H键的键长变长,对称伸缩振动频率减小,说明复合物中形成的氢键都是正常的红移型氢键.应用自然键轨道（NBO）理论和分子中的原子（AIM）理论对15种复合物的氢键性质和特征进行分析,发现氢键对于复合物的稳定性起着重要作用,当复合物形成2个或更多的氢键时,氢键的数目、类型及强度共同决定着复合物的稳定性,复合物基本符合三氢键〉二氢键〉单氢键的稳定顺序,三氢键复合物4是最稳定的,复合物3存在单氢键O—H…O,比部分二氢键复合物要稳定.     

儿茶素-胞嘧啶分子间相互作用的密度泛函研究

采用密度泛函理论的B3LYP方法,在6-31+G*基组水平上研究了儿茶素-胞嘧啶分子间相互作用机制,得到稳定的儿茶素-胞嘧啶复合物11个.计算结果表明氢键对于复合物的稳定性起着重要的作用,并且当复合物形成2个或更多的氢键时,氢键的类型及强度共同决定着复合物的稳定性.我们还应用了分子中的原子(AIM)理论和自然键轨道(NBO)理论对这11种复合物中氢键的性质和特征进行了分析.通过研究发现,所有的氢键复合物进行基组重叠误差(BSSE)校正后的相互作用能为-17.35～-43.27kJ/mol,相互作用能主要由氢键所贡献.振动分析显示,氢键的形成使相对应键的对称伸缩振动频率减小,说明这些复合物中形成的氢键都是正常的红移型氢键,与实验结果相一致.     

胞嘧啶…NO复合物结构与性质的理论研究

用密度泛函理论在BL3YP/6-311＋G*基组水平上对胞嘧啶…NO复合物体系进行了理论计算, 发现了6个能量极小的复合物. 其结合方式是NO的N或O原子与胞嘧啶的N—H键形成氢键, 最稳定的复合物的结合能为－9.65 kJ/mol. NO的N原子与胞嘧啶的结合具有更强的优势, N结合的复合物中NO的键长缩短, 而O结合的复合物中NO键长伸长. 同时, 对复合物的振动分析发现, 在胞嘧啶中所有的与NO结合的N—H键的伸缩频率下降, 而所有氨基的面内弯曲振动频率是增加的.     

木犀草素和Cd(Ⅱ)离子络合反应的光谱及计算研究

用密度泛函理论(DFT)计算研究了木犀草素与镉离子通过不同方式结合所形成的若干种典型结构, 包括天然木犀草素分子与镉离子、去质子的木犀草素分子与镉离子、去质子的木犀草素分子与水化镉离子在不同位点结合所形成的所有产物结构, 并且确定了木犀草素与镉离子结合的准确位置。结果表明, 木犀草素与镉离子的络合反应发生在5-羟-4-酮位。去质子的木犀草素分子与镉离子的络合能力强于天然木犀草素分子。通过计算概念DFT指数比较了木犀草素及不同配合物之间的反应活性差别。此外,为了进一步验证理论研究所得出的结论, 本工作还从实验角度进行了研究,在合成木犀草素-镉配合物的基础上, 通过红外和紫外可见光谱分析方法来判断配合物的结构。结果表明, 理论计算结果与实验结果很吻合良好。     

木犀草素和Cd(Ⅱ)离子络合反应的光谱及计算研究

用密度泛函理论(DFT)计算研究了木犀草素与镉离子通过不同方式结合所形成的若干种典型结构,包括天然木犀草素分子与镉离子、去质子的木犀草素分子与镉离子、去质子的木犀草素分子与水化镉离子在不同位点结合所形成的所有产物结构,并且确定了木犀草素与镉离子结合的准确位置。结果表明,木犀草素与镉离子的络合反应发生在5-羟-4-酮位。去质子的木犀草素分子与镉离子的络合能力强于天然木犀草素分子。通过计算概念DFT指数比较了木犀草素及不同配合物之间的反应活性差别。此外,为了进一步验证理论研究所得出的结论,本工作还从实验角度进行了研究,在合成木犀草素-镉配合物的基础上,通过红外和紫外可见光谱分析方法来判断配合物的结构。结果表明,理论计算结果与实验结果很吻合良好。     

带电组氨酸侧链与DNA碱基间非键作用强度的理论研究

采用MP2方法和6-31+G(d,p)基组优化得到了带有一个正电荷的组氨酸侧链与4个DNA碱基间形成的18个氢键复合物的气相稳定结构, 从文献中获取了组氨酸侧链与DNA碱基间形成的12个堆积和T型复合物的气相稳定结构, 使用包含基组重叠误差(BSSE)校正的MP2方法和aug-cc-pVTZ基组及密度泛函理论M06-2X-D3方法和aug-cc-pVDZ基组计算了这些复合物的结合能. 研究结果表明, 包含BSSE校正的M06-2X-D3方法和aug-cc-pVDZ基组能够给出较准确的结合能; 气相条件下, 组氨酸侧链与同种DNA碱基间的离子氢键作用明显强于堆积作用和T型作用, 组氨酸侧链最易通过离子氢键与胞嘧啶C和鸟嘌呤G作用形成氢键复合物, 组氨酸与胞嘧啶C和鸟嘌呤G间的T型作用强于与腺嘌呤A和胸腺嘧啶T间的离子氢键作用; 水相条件下, 组氨酸侧链与同种DNA碱基间的离子氢键作用仍明显强于堆积作用和T型作用, 组氨酸侧链更易与胞嘧啶C和鸟嘌呤G相互作用形成氢键复合物, 但是最强的组氨酸侧链与胞嘧啶C间的T型作用明显弱于与腺嘌呤A和胸腺嘧啶T间的离子氢键作用, 说明水相条件下组氨酸侧链与DNA碱基间主要通过离子氢键作用形成氢键复合物.     

木犀草素和铬离子配合物抗氧化性能及与过氧化氢自由基反应的机理

用密度泛函理论计算研究了木犀草素与Cr(Ⅲ)-木犀草素配合物的结构及它们的羟基键解离能。计算讨论了木犀草素与过氧化氢自由基反应的详细机理,并且用自然键轨道理论分析了氢原子转移机制。为了进一步验证理论研究所得出的结论,本工作还从实验角度进行了研究,结果表明,铬离子配合物清除过氧化氢自由基能力高于木犀草素,其实验结果与计算结果符合良好。     

木犀草素和铬离子配合物抗氧化性能及与过氧化氢自由基反应的机理

用密度泛函理论计算研究了木犀草素与Cr(Ⅲ)-木犀草素配合物的结构及它们的羟基键解离能。计算讨论了木犀草素与过氧化氢自由基反应的详细机理,并且用自然键轨道理论分析了氢原子转移机制。为了进一步验证理论研究所得出的结论,本工作还从实验角度进行了研究,结果表明,铬离子配合物清除过氧化氢自由基能力高于木犀草素,其实验结果与计算结果符合良好。     

溶剂和链长对木犀草素抗氧化活性影响的理论研究

基于木犀草素的结构特点,采用量子化学的密度泛函理论(DFT)方法研究了溶剂和酯基对木犀草素抗氧化活性的影响.首先,研究了化合物中分子内氢键的性质.其次,从热力学角度通过抽氢反应(HAT)、逐步电子转移质子转移(SET-PT)和质子优先损失电子转移(SPLET)机制分析了化合物的抗氧化能力.氢键性质分析发现,木犀草素及其...     

基于还原氧化石墨烯-碳纳米管复合物的电化学传感器对木犀草素的检测

利用一步电化学原位还原法制备了还原氧化石墨烯/多壁碳纳米管复合物(ErGO/MWCNTs),研究木犀草素在该复合物修饰电极(ErGO-MWCNTs/GCE)上的电化学行为,构筑了一种简易、灵敏的电化学传感器用于木犀草素的检测。结果表明,相较于裸电极和ErGO/GCE,ErGO-MWCNTs/GCE利用两种材料的协同作用有效促进了对木犀草素的电催化性能,表现出更灵敏的电流响应。在优化条件下,峰电流与木犀草素的浓度在2.5×10~(-7)～1.3×10~(-5 )mol·L~(-1)范围内呈良好线性关系,检测限为70 nmol·L~(-1)。     

Density Functional Theory Study of the Interaction between Thymine and Luteolin

The density function B3LYP method has been used to optimize the geometries of the luteolin, thymine and luteolin‐thymine complexes at 6‐31+G?? basis. The vibrational frequencies have been studied at the same level to analyze these seventeen complexes, respectively. Theories of atoms in molecules (AIM) and natural bond orbital (NBO) have been utilized to investigate the hydrogen bonds involved in all the systems. The interaction energies of the complexes corrected by basis set superposition error are between ?93.00–?76.69 kJ/mol. The calculating results indicate that strong hydrogen bonding interactions have been found in the luteolin‐thymine complexes.     

Density Functional Theory Study of the Interaction between Guanine and Catechin

The interacting patterns and mechanism of the catechin and guanine have been investigated with the density functional theory B3LYP method by 6‐31G* basis set. Fourteen stable structures for the catechin‐guanine complexes have been found which form two hydrogen bonds at least. The results indicate that the complexes are mainly stabilized by the hydrogen bonding interactions. At the same time, the number and strength of hydrogen bond play a co‐determinant parts in the stability of the complexes which can form two or more hydrogen bonds. Theories of atoms in molecules (AIM) and natural bond orbital (NBO) have been adopted to investigate the hydrogen bonds involved in all systems. The interaction energies of all complexes have been corrected for basis set superposition error (BSSE), ranging from ?38.86 to ?14.56 kJ/mol. The results showed that the hydrogen bonding contributes to the interaction energies dominantly. The corresponding bonds stretching motions in all complexes are red‐shifted relative to that of the monomer, which is in agreement with experimental results.     

Density Functional Theory Study on Interaction between Catechin and Thymine

The interacting patterns and mechanism of the catechin and thymine have been investigated with the density functional theory Becke's three-parameter nonlocal exchange functional and the Lee, Yang, and Parr nonlocal correlation functional (B3LYP) method by 6-31+G*basis set. Thirteen stable structures for the catechin-thymine complexes have been found which form two hydrogen bonds at least. The vibrational frequencies are also studied at the same level to analyze these complexes. The results indicated that catechin interactedwith thymine by three different hydrogen bonds as N-H…O、C-H…O、O-H…O and the complexes are mainly stabilized by the hydrogen bonding interactions. Theories of atoms in molecules and natural bond orbital have been adopted to investigate the hydrogen bondsinvolved in all systems. The interaction energies of all complexes have been corrected for basis set superposition error, which are from -18.15 kJ/mol to -32.99 kJ/mol. The results showed that the hydrogen bonding contribute to the interaction energies dominantly. The corresponding bonds stretching motions in all complexes are red-shifted relative to that of the monomer, which is in agreement with experimental results.     

Density Functional Theory Study on Hydrogen Bonding Interaction of Catechin-(H2O)n

Density functional theory B3LYP method with 6‐31G* basis set has been used to optimize the geometries of the catechin, water and catechin‐(H₂O)_n complexes. The vibrational frequencies have been studied at the same level to analyze these complexes. Six and eleven stable structures for the catechin‐H₂O and catechin‐(H₂O)₂ have been found, respectively. Theories of atoms in molecules (AIM) and natural bond orbital (NBO) have been utilized to investigate the hydrogen bonds involved in all the systems. The interaction energies of all the complexes corrected by basis set superposition error, are from ?13.27 to ?83.56 kJ/mol. All calculations also indicate that there are strong hydrogen‐bonding interactions in catechin‐water complexes. The strong hydrogen‐bonding contributes to the interaction energies dominantly. The O–H stretching motions in all the complexes are red‐shifted relative to that of the monomer.     

The vibrational spectra of the boron halides and their molecular complexes Part 10. The complexes of boron trifluoride with ammonia and its methyl derivatives. An ab initio study

Ab initio calculations, at the level of second order M?ller-Plesset perturbation theory, and using a triple-zeta Gaussian basis set with polarization and diffuse functions on all atoms, have been carried out on the donor-acceptor complexes of boron trifluoride with ammonia and its mono-, di- and trimethyl derivatives. The structures, interaction energies and vibrational spectra of the complexes have been determined. An eclipsed and a staggered conformer have been examined for each complex, and the preferred conformer was found to be the staggered species in each case. The computed data have been compared with those for some similar complexes containing boron trifluoride and a series of oxygen and sulphur electron donors (water, hydrogen sulphide, methanol, methanethiol, dimethyl ether and dimethyl sulphide) and the effect of successive methyl substitution in all three series has been investigated.     

Density Functional Investigation of Methanethiol and Dimethyl Sulfide Adsorption on Zeolite

The density functional theory and cluster model methods have been employed to investigate the interactions between methanethiol, dimethyl sulfide and zeolites. The molecular complexes formed by adsorption of methanethiol or dimethyl sulfide on silanol H3SiOSi(OH)2OSiH3 with five coordination forms or four coordination forms, and complexes formed by interactions of Bronsted acid sites of bridging hydroxyl H3Si(OH)Al(OH)2OSiH3 with methanethiol or dimethyl sulfide have been investigated. Full optimization and frequency analysis of all cluster models have been carried out using the B3LYP hybrid method at 6-31 G (d,p) basis set level for hydrogen, silicon, aluminum, oxygen, carbon, and sulfur atoms. The structures and energy changes of different coordination forms between methanethiol and H3Si(OH)Al(OH)2OSiH3, dimethyl sulfide and H3Si(OH)Al(OH)2OSiH3, methanethiol and H3SiOSi(OH)2OSiH3, dimethyl sulfide and H3SiOSi(OH)2OSiH3 complexes have been comparatively studied. The calculated results showed the nature of interactions that led to the formation of all complexes was van der Waals force confirmed by an insignificant change of geometric structures and properties. The conclusions that methanethiol and dimethyl sulfide molecules were adsorbed on bridging hydroxyl group prior to silanol group were obtained on the basis of adsorption heat, the most stable adsorption models of a 6 ring structure for interaction between bridging hydroxyl and methanethiol, and a 7 ring structure for interaction between bridging hydroxyl and dimethyl sulfide.     

Template synthesis and spectroscopic characterization of 16-membered [N4] Schiff-base macrocyclic complexes of Co(II), Ni(II), Cu(II), and Zn(II): in vitro DNA-binding studies

Template condensation between o-phthalaldehyde and 3,4-diaminotoluene resulted in mononuclear 16-membered tetraimine macrocyclic complexes, [MLCl₂] [M?=?Co(II), Ni(II), Cu(II), and Zn(II)]. The proposed stoichiometry and the nature of the complexes have been deduced from elemental analyses, mass spectra, and molar conductance data. The macrocyclic framework has been inferred from ν(C=N) and ν(M–N) bands in the IR spectra and the resonances observed in ¹H and ¹³C-NMR spectra. Octahedral geometry has been assigned for all these complexes on the basis of position of the bands in electronic spectra and magnetic moment data; distorted octahedral geometry has been assigned for the Cu(II) complex on the basis of EPR data. The low-conductivity data of all the complexes suggest their non-ionic nature. Interaction of these complexes with calf-thymus DNA (CT DNA) has been examined with fluorescence quenching experiments, which show that the complexes are avid binders of CT DNA.     

Density functional theory study on the interaction of catechin and cytosine

The interacting patterns and mechanism of the catechin and cytosine have been investigated using the density functional theory B3LYP method with 6-31+G* basis set.Eleven stable structures of the catechin-cytosine complexes have been found respectively.The results indicate that the complexes are mainly stabilized by the hydrogen bonding interactions.Theories of atoms in molecules(AIM) and natural bond orbital(NBO) have been utilized to investigate the hydrogen bonds involved in all the systems.The interactio...     

The Spectroscopy: a modern technology in the characterization of novel macrocyclic ligand and its homo-bi-nuclear cobalt (II) complexes

A novel hexadentate nitrogen-sulphur donor [N(4)S(2)] macrocyclic ligand, i.e. 3,13-dithio-6,10,16,20-tetraoxo-8,18-dithia-1,2,4,5,11,12,14,15-octaazacyclocosane (L), has been synthesized. Cobalt (II) complexes of this ligand have been prepared and subjected to elemental analyses, molar conductance measurements, magnetic moment susceptibility measurements, mass, (1)H NMR (Ligand), IR, electronic, and EPR spectral studies. On the basis of molar conductance, complexes may be formulated as [Co(2)(L)X(2)]X(2) [where X=Cl(-), Br(-), NO(3)(-) and NCS(-)] due to their 1:2 electrolytic nature in dimethylformamide (DMF). All the complexes are of the high spin type and are four coordinated. On the basis of IR, electronic and EPR spectral studies tetrahedral geometry has been assigned to all the complexes. The antimicrobial activities of the ligand and its complexes, as growth inhibiting agents, have been screened in vitro against several species of bacteria and plant pathogenic fungi.