Macromolecule mass spectrometry: Citation mining of user documents

Identifying research users, applications, and impact is important for research performers, managers, evaluators, and sponsors. Identification of the user audience and the research impact is complex and time consuming due to the many indirect pathways through which fundamental research can impact applications. This paper identified the literature pathways through which two highly-cited papers of 2002 Chemistry Nobel Laureates Fenn and Tanaka impacted research, technology development, and applications. Citation Mining, an integration of citation bibliometrics and text mining, was applied to the >1600 first generation Science Citation Index (SCI) citing papers to Fenn's 1989 Science paper on Electrospray Ionization for Mass Spectrometry, and to the >400 first generation SCI citing papers to Tanaka's 1988 Rapid Communications in Mass Spectrometry paper on Laser Ionization Time-of-Flight Mass Spectrometry. Bibliometrics was performed on the citing papers to profile the user characteristics. Text mining was performed on the citing papers to identify the technical areas impacted by the research, and the relationships among these technical areas.     

Characterization of end groups in nylon 6 by MALDI-TOF mass spectrometry

Four samples of Ny6, each terminated by different end groups, i.e., diamino terminated, monoamino terminated (monocapped), dicarboxyl terminated, and amino-carboxyl terminated, were synthesized and analyzed by MALDI-TOF Mass Spectrometry, in order to accurately characterize their structure by direct identification of mass resolved chains. A self-calibrating method for the MALDI-TOF mass spectra of polymeric samples was used in order to distinguish the end groups existing in the four samples of Ny6. The MALDI-TOF spectra showed the presence of protonated, sodiated, and potassiated ions that were assigned to Ny6 chains containing the expecteted end groups. Furthermore, the MALDI-TOF spectra made possible the simultaneous detection of the cyclic oligomers of Ny6 present in these samples, thus achieving the full structural characterization of the molecular species present in these polyamides. © 1996 John Wiley & Sons, Inc.     

Accurate mass measurements by Fourier transform mass spectrometry in the study of advanced glycation end products/peptides

The Maillard reaction occurring between sugars and amino groups is important in living systems. When amino groups belonging to protein chains are involved, the Maillard reaction has been invoked as responsible for protein cross-linking and the production of 'toxic' compounds. The reaction leads to the production of a heterogeneous group of substances, usually called advanced glycation end products (AGEs). Classical analytical approaches, such as spectroscopic (ultraviolet, fluorescence) and mass spectrometric (matrix-assisted laser desorption/ionization, liquid chromatography/electrospray ionization mass spectrometry) methods, have shown that the digestion mixture is highly complex. However, there are clear differences between the digestion mixtures of glycated and unglycated human serum albumin (HSA). In the former case, possible glycated peptides belonging to the AGE peptide class may be identified. Tandem mass spectrometric experiments on selected species seemed to be promising as regards structural information, but it was thought of interest to undertake the present investigation, based on liquid chromatography/electrospray ionization Fourier transform mass spectrometry, in order to obtain definitive results on their elemental composition. Using this approach, about 20 glycated peptides were detected and their possible structures were postulated by examining the known sequence of HSA.     

Enzymatic digestion and mass spectrometry in the study of advanced glycation end products/peptides

An extensive study was carried out on HSA and non-enzymatically glycated HSA by enzymatic digestion with trypsin and endoproteinase Lys-C, with the aim of identifying specific glycated peptides deriving from enzymatic digestion of glycated HSA. They may be considered, in pectore, as advanced glycation end products/peptides. These compounds, important at a systemic level in diabetic and nephropathic subjects, are produced by enzymatic digestion of in vivo glycated proteins: They are related to the pathological state of patients and have been invoked as responsible for tissue modifications. The digested mixtures obtained by the two enzymes were analyzed by MALDI/MS and LC/ESI/MSn, and clear cut differences were found. First of all, the digestion products of glycated HSA are generally less abundant than those observed in the case of unglycated HSA, accounting for the lower proclivity of the former to enzymatic digestion. MS/MS experiments on doubly charged ions, comparisons with a protein database, and molecular modeling to identify the lysine NH2 groups most exposed to glycation, identified some glycated peptides in digestion mixtures obtained from both types of enzymatic digestion. Residues 233K, 276K, 378K, 545K, and 525K seem to be privileged glycation sites, in agreement with the fractional solvent accessible surface values calculated by molecular modeling.     

Microdevices in mass spectrometry

Miniaturization of laboratory instrumentation is becoming critical in achieving the speed and throughput required by the current revolutionary progress in biology. This mini review critically summarizes the present status of microfluidic devices designed for use in mass spectrometry.     

Lasers in mass spectrometry

Over about the last twenty years, the use of laser techniques has become increasingly common in the field of mass spectrometry. Here, we give a brief overview of the varied applications of lasers in this area. These developments are far from complete and they are expected to continue. However, laser methods have already made valuable contributions to problems of mass analysis and it seems likely that they are here to stay.     

A double quadrupole for mass spectrometry/mass spectrometry

A double quadrupole mass spectrometer has been constructed to study unimolecular and collision-induced dissociation products from mass-selected ions. The two quadrupoles are closely coupled and the dissociation products sampled from a 2.5-mm interquadrupole region. Spectra obtained on the double quadrupole instrument are compared with published data obtained with triple quadrupole and reversed-sector (MIKE) mass spectrometers. The results indicate that the simple double quadrupole spectrometer is a highly efficient device which is a viable alternative to more complex quadrupole or sector instruments for obtaining dissociation spectra of mass-selected ions.     

Oligosaccharide characterizations by fast atom bombardment mass spectrometry. Fragmentation study in relation to the substituent at the reducing end

A systematic investigation of oligosaccharides (cello-oligosaccharides, malto-oligosaccharides, their corresponding alditols and methylmaltosides) was undertaken using fast atom bombardment mass spectrometry. Experimental conditions were defined in order to obtain characteristic fragmentation in relation to the structure of the oligomers. The role of substituents at the reducing end in the fragmentation process was demonstrated.     

Comparison of mass resolution criteria in mass spectrometry

For a single peak, mass spectral resolution can be expressed in terms of peak width or ratio of peak position to peak width. Alternatively, for two equally intense peaks of equal width, resolution can be defined as the minimum peak separation such that the height of the valley between the combined peaks is less than a specified ratio (1%, 10%, 50%, 100%) of the individual (or combined) peak maximum. All these definitions depend on peak shape. Conversion formulae between various mass resolution criteria are presented for each of eight spectral peak shapes: Gaussian, triangular, trapezoidal, Lorentzian (absorption-mode, magnitude-mode, and sine-apodized magnitude-mode), and sinc (absorption-mode and magnitude-mode). From these formulae, mass resolutions based upon different criteria are readily compared for the same or different line shapes.     

Electrospray mass spectrometry and tandem mass spectrometry of bimetallic oxovanadium complexes

A series of six bimetallic oxovanadium complexes (1-6; only one was purified) were investigated by electrospray quadrupole time-of-flight tandem mass spectrometry (ESI-QTOF-MS/MS) in negative-ion mode. Radical molecular anions [M](.-) were observed in MS mode. Fragmentation patterns of [M](.-) were proposed, and elemental compositions of most of the product ions were confirmed on the basis of the high-resolution ESI-CID-MS/MS spectra. A complicated series of low-abundance product ions similar to electron impact (EI) ionization spectra indicated the radical character of the precursor ions. Fragment ions at m/z 214, 200, and 182 seem to be the characteristic ions of bimetallic oxovanadium complexes. These ions implied the presence of a V-O-V bridge bond, which might contribute to stabilization of the radical. To obtain more information for structural elucidation, three representative bimetallic oxovanadium complexes (1-3) were analyzed further by MS in positive-ion mode. Positive-ion ESI-MS produced adduct ions of [M + H](+), [M + Na](+), and [M + K](+). The fragmentation patterns of [M + Na](+) were different than those of radical molecular anions [M](.-). Relatively simple fragmentation occurred for [M + Na](+), possibly due to even-electron ion character. Negative-ion MS and MS/MS spectra of the hydrolysis product of Complex 1 supported these finding, in particular, the existence of a V-O-V bridge bond.     

Electron impact ionization mass spectrometry and tandem mass spectrometry of phenylalkylpyridazines

The mass spectrometric fragmentation behaviour of pyridazine and four monosubstituted derivatives containing a pbenylalkyl side-chain (3- and 4-benizylpyridazine, 3- and 4-(2-pbenylethyl)pyridazine) was investigated. In the electron impact ionization mess spectra of the 3-substituted compounds abundant [M – H]⁺ peaks are observed. This allows a clear distinction between 3- and 4-substituted pyridazines, as the spectra of the latter isomers show only very weak [M – H]⁺ signals. The stability of [M – H]⁺ ions derived from 3-alkylpyridazines (deduced from only the very low abundance of further fragment ions) gives strong evidence for a cyclic structure of these ions. One fragmentation pathway typical of the parent pyridazine, the [M - N₂] fragmentation, was not detectable with any of the phenylalkylpyridazines investigated. Instead, loss of HCN, H₃CN⁺ and N²H⁺ was observed. An interesting fragmentation, observed with 3-(2-phenylethyl)pyridazine, is the loss of ⁺CH₃ from the molecular ion and also from the [M – H]⁺ ion.     

Generation of average mass values and end group information of polymers by means of a combination of matrix-assisted laser desorption/ionization-mass spectrometry and liquid secondary ion-tandem mass spectrometry

Matrix-assisted laser desorption/ionization-mass spectrometry (MALDI-MS) and liquid secondary ion-tandem mass spectrometry (LSI-MS/MS) have been applied to the analysis of synthetic polymers to generate values for the average mass and the mass of the end groups. The average mass values were calculated for polymethylmethacrylate and polystyrene standards from the MALDI-MS data. Abundant fragment ions of the polymers, generated by means of LSI-MS/MS, were consistent with the known structures of the end groups of the polymers. Furthermore, losses from the side chains of the polymers were also observed in the LSI-MS/MS spectra.     

Analytical mass spectrometry

A review is made of the basic theory, instrumentation and application of mass spectrometry, with special reference to the development of the equipment and its impact on the scope of application.