Heterogeneous diffusion in thin polymer films as observed by high-temperature single-molecule fluorescence microscopy

Single-molecule fluorescence microscopy was used to investigate the dynamics of perylene diimide (PDI) molecules in thin supported polystyrene (PS) films at temperatures up to 135 °C. Such high temperatures, so far unreached in single-molecule spectroscopy studies, were achieved using a custom-built setup which allows for restricting the heated mass to a minimum. This enables temperature-dependent single-molecule fluorescence studies of structural dynamics in the temperature range most relevant to the processing and to applications of thermoplastic materials. In order to ensure that polymer chains were relaxed, a molecular weight of 3000 g/mol, clearly below the entanglement length of PS, was chosen. We found significant heterogeneities in the motion of single PDI probe molecules near T(g). An analysis of the track radius of the recorded single-probe molecule tracks allowed for a distinction between mobile and immobile molecules. Up to the glass transition temperature in bulk, T(g,bulk), probe molecules were immobile; at temperatures higher than T(g,bulk) + 40 K, all probe molecules were mobile. In the range between 0 and 40 K above T(g,bulk) the fraction of mobile probe molecules strongly depends on film thickness. In 30-nm thin films mobility is observed at lower temperatures than in thick films. The fractions of mobile probe molecules were compared and rationalized using Monte Carlo random walk simulations. Results of these simulations indicate that the observed heterogeneities can be explained by a model which assumes a T(g) profile and an increased probability of probe molecules remaining at the surface, both effects caused by a density profile with decreasing polymer density at the polymer-air interface.     

Structural and compositional mapping of a phase-separated Langmuir-Blodgett monolayer by atomic force microscopy

The structure and composition of a phase-separated arachidic acid (C19H39COOH) (AA) and perfluorotetradecanoic acid (C13F27COOH) (PA) Langmuir-Blodgett monolayer film was characterized by several different types of atomic force microscopic measurements. At the liquid-air interface, surface pressure-area isotherms show that mixtures of the two acids follow the additivity rule expected from ideal mixtures. Topographic images of the deposited monolayer indicate that the surfactants are oriented normal to the substrate surface, and that the acids undergo phase separation to form a series of discontinuous, hexagonal domains separated by a continuous domain. A combination of lateral force (friction) imaging and adhesion force measurements show that the discontinuous domains are enriched in AA, whereas the surrounding continuous domain is a mixture of both AA and PA. This was further verified by selective, in situ dissolution of AA by n-hexadecane, followed by high-resolution topographical imaging of the discontinuous domains.     

Deposition and photopolymerization of phase-separated perfluorotetradecanoic acid-10,12-pentacosadiynoic acid Langmuir-Blodgett monolayer films

Mixed monolayer surfactant films of perfluorotetradecanoic acid and the photopolymerizable diacetylene molecule 10,12-pentacosadiynoic acid were prepared at the air-water interface and transferred onto solid supports via Langmuir-Blodgett (LB) deposition. The addition of the perfluoroacid to the diacetylene surfactant results in enhanced stabilization of the monolayer in comparison with the pure diacetylene alone, allowing film transfer onto a solid substrate without resorting to addition of cations in the subphase or photopolymerization prior to deposition. The resulting LB films consisted of well-defined phase-separated domains of the two film components, and the films were characterized by a combination of atomic force microscope (AFM) imaging and fluorescence emission microscopy both before and after photopolymerization into the highly emissive "red form" of the polydiacetylene. Photopolymerization of the monolayer films resulted in the formation of diacetylene bilayers, which were highly fluorescent, with the apparent rate of photopolymerization and the fluorescence emission of the films being largely unaffected by the presence of the perfluoroacid.     

An investigation of the feasibility of applying Raman microscopy for exploring stained glass

Raman microscopy (RM) is widely used in archaeometrical studies of pigments, geomaterials and biomaterials in the Cultural Heritage, but one domain has received relatively less attention: the colouring of stained glass. This feasibility study investigates the advantages and disadvantages of employing RM alone in this field by means of a study of modern commercial glasses, modern commercial pigments, and a few archaeological stained glasses, but especially by an experimental project whereby the authors created stained glass. The different kinds of possible unreacted or reacted material are rigorously established. The distinction between Na, K, Ca glasses was explored, as well as the red colouring of an industrial glass which was proved to be due to the presence of (Zn, Cd)S(x)Se(1-x). Yellow, green, blue and maroon pigments were studied before and after an initial firing and then after heating on glass. The quality of the Raman spectra varied enormously and was sometimes disappointing. Nevertheless RM successfully identified various coloured products such as bindheimite, crocoite, cobalt aluminate, haematite; relict reactants such as corundum, eskolaite and oxides of Co or Pb; and provided indications of other phases such as maghemite or Co-olivine. One conclusion is that the amount of chemical reaction between the pigments and the glass is small compared to the amount in between the pigments. Comments are made on the potential for dating archaeological glass from the known age of synthesis of the pigments, and of the dangers of this approach. Overall it has been shown that RM can be useful for studying stained glass, especially for remote in situ analytical operations with mobile RM, but one must expect some problems either with fluorescence or weak spectra.     

应用全内反射单分子荧光成像研究蛋白复合物亚基组成

细胞的生化过程大都是由蛋白复合物完成的,研究蛋白复合物亚基的组成对于了解蛋白质的结构和生物学功能具有重要的意义,然而如何准确确定蛋白复合物中蛋白质亚基的数量（stoichiometry）仍然是一个挑战.近年来,活细胞体系单分子荧光成像技术的不断发展为原位实时动态地研究蛋白质的结构和性质提供了新的手段.本文主要介绍了应用活细胞全内反射单分子荧光成像技术表征细胞膜区蛋白复合物组成的3种方法,包括单分子漂白步数分析、荧光强度统计分布以及蛋白运动分析,并结合其基本原理介绍了这几种方法在活细胞体系膜蛋白研究中的应用.     

Mechanisms and advancement of antifading agents for fluorescence microscopy and single-molecule spectroscopy

Modern fluorescence microscopy applications go along with increasing demands for the employed fluorescent dyes. In this work, we compared antifading formulae utilizing a recently developed reducing and oxidizing system (ROXS) with commercial antifading agents. To systematically test fluorophore performance in fluorescence imaging of biological samples, we carried out photobleaching experiments using fixed cells labeled with various commonly used organic dyes, such as Alexa 488, Alexa 594, Alexa 647, Cy3B, ATTO 550, and ATTO 647N. Quantitative evaluation of (i) photostability, (ii) brightness, and (iii) storage stability of fluorophores in samples mounted in different antifades (AFs) reveal optimal combinations of dyes and AFs. Based on these results we provide guidance on which AF should preferably be used with a specific dye. Finally, we studied the antifading mechanisms of the commercial AFs using single-molecule spectroscopy and reveal that these empirically selected AFs exhibit similar properties to ROXS AFs.     

Deconvoluting subensemble chemical reaction kinetics of platinum-sulfur ligand exchange detected with single-molecule fluorescence microscopy

The subensemble kinetics of a platinum-sulfur covalent chemical reaction at the solution/surface interface of a model industrial catalyst support was examined using single-molecule fluorescence microscopy (SMFM) and was found to exhibit biexponential first-order kinetic behavior. The observed kinetics was a convolution of the observation probability and chemical reaction rate. These results suggest that deconvolution strategies may be broadly important for obtaining accurate chemical reaction kinetics with SMFM.     

In situ observation of protein-adsorbed stearic acid monolayer by Brewster angle microscopy and fluorescence microscopy

A fluorescence probe, fluorescein isothiocyanate (FITC), was introduced to proteins, and the morphology of protein-adsorbed stearic acid monolayer was observed by fluorescence microscopy and Brewster angle microscopy (BAM) in order to analyze images. At a low protein concentration, the surface pressure increased as shown by a sigmoidal curve. A number of stripe patterns in the BAM images increased and the shapes became clear with increasing concentration of proteins. Simultaneously, the size of circular islands also became small, and finally disappeared. These results suggest that the very large stripe patterns in the BAM image show the assembly of both proteins and stearic acid molecules, and small circular islands show only the stearic acid molecules. © 1998 John Wiley & Sons, Ltd.     

Optical characteristics of atomic force microscopy tips for single-molecule fluorescence applications.

Knowledge of the optical properties of atomic force microscopy (AFM) tips is relevant for the combination of optical and force spectroscopy. The luminescence properties of five commercial AFM tips were characterized using a combination of multiparameter fluorescence detection (MFD) and scanning confocal techniques. These include three Si3N4 tips, one silicon tip, and one high-density carbon (HDC) tip grown on top of a silicon tip. Time-decay histograms of the signal were analyzed to determine the strength of scatter, constant background, and fluorescence in the observed signal. Intensity and anisotropy images with optical resolution down to the diffraction limit were generated. The optical signal recorded from the apex of the Si3N4 tips ranged from 0.7 to 1.9 times the count rates from single Rhodamine 110 molecules under similar illumination conditions. The signal is predominantly composed of scatter and background (>85%), plus a small fluorescence component with lifetimes between 1 and 3 ns. The intensity of the recorded signal fell with increasing distance from the apex, and by 300 nm the signals fell below single-molecule levels for all Si3N4 cantilevers. Silicon cantilevers demonstrated very low count rates relative to single-molecule measurements under all conditions, and virtually no fluorescence. The high-density carbon tips also demonstrated low count rates, but the signal contained a short lifetime fluorescence component (0.7 ns). The intensity of the signals from each of the tips was geometry dependent, demonstrating the highest intensities at the edges and corners. Likewise, the anisotropy of all tip signals was observed to be geometry dependent, with the dependence varying on a case-by-case basis. The implications for using confocal illumination instead of total internal reflection are discussed.     

Segmental dynamics near the chain end of polystyrene in its ultrathin films: A study by single-molecule fluorescence de-focus microscopy

Rotational motion of fluorophores chemically attached to polystyrene chain-ends in ultra-thin films on solid substrates was studied by single-molecule fluorescence de-focus microscopy. The collective feature of the rotational motion was found and evidenced by the sharp change of the population of fluorophores undergoing rotational motion within a very narrow temperature range (named as the changing temperature, T _c). The T _c value was found to depend on film thickness and interfacial chemistry and the variation of the T _c value is also dependent on the molecular weight of the polymer. The results demonstrate that the spatial confinement effect enhances the segmental mobility near the polymer chain-ends while the interfacial attraction restricts the segmental motion inside the thin film.     

Detection of single-molecule DNA hybridization by using dual-color total internal reflection fluorescence microscopy

We examined the use of prism-type simultaneous dual-color total internal reflection fluorescence microscopy (TIRFM) to probe DNA molecules at the single-molecule level. The system allowed the direct detection of the complementary interactions between single-stranded probe DNA molecules (16-mer) and various lengths of single-stranded target DNA molecules (16-mer and 55-mer) that had been labeled with different fluorescent dyes (Cy3, Cy5, and fluorescein). The polymer-modified glass substrate and the extent of DNA probe immobilization were easily characterized either with standard TIRFM or with atomic force microscopy. However, only dual-color TIRFM could provide unambiguous images of individual single-stranded target DNA molecules hybridized with the correct sequence in the range of fM–aM. Succinic anhydride showed low RMS roughness and was found to be an optimal blocking reagent against non-specific adsorption, with an efficiency of 92%. This study provides a benchmark for directly monitoring the interactions and the detection of co-localization of two different DNA molecules and can be applied to the development of a nanoarray biochip at the single-molecule level.     

Annexin A1 interaction with a zwitterionic phospholipid monolayer: a fluorescence microscopy study

We present the results of a fluorescence microscopy study of the interaction of annexin A1 with dipalmitoylphosphatidylcholine (DPPC) monolayers as a function of the lipid monolayer phase and the pH of the aqueous subphase. We show that annexin A1-DPPC interaction depends strongly on the domain structure of the DPPC monolayer and only weakly on the subphase pH. Annexin A1 is found to be line active, with preferential adsorption at phase boundaries. Also, annexin A1 is found to form networks in the presence of a domain structure in the monolayer. Our results point toward an important contribution of the unique N-terminal domain to the organization of the protein at the interface.     

Multi-beam single-molecule defocused fluorescence imaging reveals local anisotropic nature of polymer thin films

We developed a method to determine full three-dimensional orientation distribution of individual molecules based on wide-field defocused fluorescence imaging. Excitation efficiencies of out-of-plane oriented molecules were improved dramatically by illuminating molecules with multiple laser beams. Our high throughput approach allowed us to obtain unbiased statistical distributions of orientations of doped molecules in spin-coated polymer thin films. We found thickness- and glass transition temperature-dependent distributions of the molecular orientations which reflect local chain orientations and relaxation in the polymer thin films.     

Nanoscale organization of the pathogen receptor DC-SIGN mapped by single-molecule high-resolution fluorescence microscopy.

DC-SIGN, a C-type lectin exclusively expressed on dendritic cells (DCs), plays an important role in pathogen recognition by binding with high affinity to a large variety of microorganisms. Recent experimental evidence points to a direct relation between the function of DC-SIGN as a viral receptor and its spatial arrangement on the plasma membrane. We have investigated the nanoscale organization of fluorescently labeled DC-SIGN on intact isolated DCs by means of near-field scanning optical microscopy (NSOM) combined with single-molecule detection. Fluorescence spots of different intensity and size have been directly visualized by optical means with a spatial resolution of less than 100 nm. Intensity- and size-distribution histograms of the DC-SIGN fluorescent spots confirm that approximately 80 % of the receptors are organized in nanosized domains randomly distributed on the cell membrane. Intensity-size correlation analysis revealed remarkable heterogeneity in the molecular packing density of the domains. Furthermore, we have mapped the intermolecular organization within a dense cluster by means of sequential NSOM imaging combined with discrete single-molecule photobleaching. In this way we have determined the spatial coordinates of 13 different individual dyes, with a localization accuracy of 6 nm. Our experimental observations are all consistent with an arrangement of DC-SIGN designed to maximize its chances of binding to a wide range of microorganisms. Our data also illustrate the potential of NSOM as an ultrasensitive, high-resolution technique to probe nanometer-scale organization of molecules on the cell membrane.     

Quantitative detection of antibody based on single-molecule counting by total internal reflection fluorescence microscopy with quantum dot labeling

We presented a sensitive method to quantify antibody based on single-molecule counting by total internal reflection fluorescence microscopy with quantum dot labeling. In this method, the biotinylated monoclonal anti-human IgG molecules were immobilized on the silanized glass substrate surface. By the strong biotin-streptavidin affinity, streptavidin-coated quantum dots were labeled to the target molecules as fluorescent probe. Then, images of fluorescent spots in the evanescent wave field were obtained by a high-sensitivity electron multiplying charge-coupled device. Finally, the number of fluorescent spots corresponding to single molecules in the subframe images was counted, one by one. The linear range of 8.0 × 10⁻¹⁴ to 5.0 × 10⁻¹² mol L⁻¹ was obtained between the number of single molecules and the sample concentration.     

Phospholipid foam films studied by contact angle measurements and fluorescence microscopy

 Foam films drawn from suspensions of the phospholipid 1,2-dimyristoyl-sn-glycero-3-phosphorylcholine (DMPC) in water/ethanol mixtures were used for the investigation of the relation between the properties of the monolayers and the interaction between the film surfaces. The film thickness and the contact angle between the film and the meniscus were measured as a function of the temperature in a range around the temperature of the main phase transition for the lipid. Additionally, fluorescence microscopy was applied to investigate the distribution of a fluorescent lipidlike dye in the surface of the film and the meniscus. From the contact angle the free energy of film formation was calculated. At the temperature of the chain-melting phase transition the film thickness decreases by 0.7 nm. This can be related to a decrease in the thickness of the hydrocarbon layers of the lipid monolayers at this temperature. The decrease in the film thickness leads to a reduction in the free energy by increasing the van der Waals attraction between the film surfaces. No structures were observed in the monolayers of the film in the fluorescence investigation. However, on formation of the very thin equilibrium film the dye was expelled from the film area, indicating an increase in the packing density of the lipid, if the monolayers are in adhesive contact in the film. Received: 31 January 2000 Accepted: 25 February 2000     

Surface plasmon fluorescence investigation of energy-transfer-controllable organic thin films

Thin functional organic films on a gold substrate were fabricated by adsorbing tetrakis(carboxyphenyl)porphyrin (TCPP) on a spacer layer, which was prepared by the layer-by-layer adsorption of a dendrimer and a linear polymer. The thickness and photoluminescence of the films were investigated by surface plasmon resonance and surface plasmon fluorescence techniques, respectively. TCPP adsorbed on the spacer layer in aqueous solutions of different ionic strengths resulted in a thick TCPP adlayer at high ionic strength and a shrunk spacer layer at low ionic strength. The fluorescence was quenched at high ionic strength but could be observed at low ionic strength. The effects are explained by the states of dye aggregation. This study shows the control of energy transfer from a metal surface to a dye layer by changing the dye adlayer. It can contribute to the development of molecular devices involving energy-transfer systems.     

Electron microscopy investigations of polyester-polyurethane elastomers stained with ruthenium tetroxide

Microphase separation of as-reacted polyester-polyurethane samples based on α-hydro-ω-hydroxypoly(oxyethyleneoxyadipoyl)/4,4′-methylenedi(phenyl isocyanate)/1,4-butanediol/2-ethyl-2-hydroxymethyl-1,3-propanediol (mole ratio 1:3,2:1,9:0,1) was studied using transmission electron microscopy. A new staining technique was applied which uses ruthenium tetroxide vapour for the treatment of the polymer. Ruthenium tetroxide reacts preferably with the hard-segment-rich microdomains of the polyester-polyurethane. Therefore, a well-contrasted pattern is formed by staining which reflects the microdomain structure of the polymer. The hard-segment-rich microdomains have irregular, mostly globular shape, and their sizes range from about 2 to 8 nm.     

Formation and dissolution of phase-separated structures in ultrathin blend films

The phase separation of ultrathin polymer blend films of deuterated poly(styrene)/poly(vinylmethylether) leads to a variety of film morphologies, depending on polymer composition. Phase-separation measurements are made at a constant temperature difference from the critical temperature, leading to a bicontinuous spinodal decomposition pattern for near-critical blend compositions and to “mounds” and “holes” for PVME-rich and dPS-rich off-critical mixtures, respectively. Reverse temperature jumps of the phase-separated blend films into the one-phase region result in dissolution of the undulating surface patterns, confirming the phase-separation origin of the film patterns. © 1998 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 36 : 191–200, 1998