水/乙醇混合溶剂中氨基酸离解的取代基效应

用LKB-2277BioActivityMonitor测定了298.15K时甘氨酸,丙氨酸和丝氨酸在水/乙醇混合溶剂中的离解焓,计算了相应的离解熵。根据三个氨基酸分别与某一参考酸之间的质子交换反应,重点讨论了溶剂结构变化对取代基效应焓,熵变化的影响。实验结果表明在水/乙醇混合溶剂的最大结构化区域,取代基效应最为显著。认为在混合溶剂的富水区大块的似冰山结构的水分子簇的寿命大大延长。     

KCl effect on the solubility of five different amino acids in water

Using the analytical gravimetric method the solubility of glycine and dl-alanine in aqueous systems of KCl at 323.15 K, and of l-isoleucine, l-threonine and l-serine in the same system, at 298.15 and 323.15 K, were measured for salt concentrations ranging up to 2.0 molal.     

Thermodynamics and the mechanism of interaction of uracil with amino acids in water

Interaction of most of the side groups of amino acids with uracil and their dehydration do not contribute significantly to the pair interaction coefficients. It has been suggested that the interaction between the terminal groups of amino acids and the side groups of uracil (NH, CO) occurs by the acid-base mechanism. The possibility was found of formation of uracil+l-proline associates, owing to favorable configurations of the components, uracil+l-tryptophan associates, owing to π-π electronic interaction between their aromatic rings, and uracil+l-lysine: HCl, owing to the side ammonium group in amino acid. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 5, pp. 932–934, May, 1997.     

Proton transfer at the carboxylic sites of amino acids: A single water molecule catalyzed process

Ab initio calculations at MP2 level of theory were used to study the proton transfer at the carboxylic sites of amino acids, in the isolated, mono‐ and di‐hydrated forms. In the case of water dimer, two interaction modes with glycine neutral structures (see Fig. 3 ) were explored, corresponding to the concerted and stepwise reaction pathways. Their transition states can be described as (H₂O? H? OH₂)⁺ [Fig. 4 (a)] and (H₂O‐‐‐H? OH₂)⁺ [Fig. 4 (b)], respectively. The energy analysis indicated that the concerted pathway is preferred. In the isolated, mono‐ and di‐hydrated glycine complexes, the activation barriers of the proton transfer at the carboxylic sites were calculated to be 34.49, 16.59, and 13.36 kcal mol^?1, respectively. It was thus shown that the proton transfer is significantly assisted and catalyzed by water monomer so that it can take place at room temperature. Instead, the further addition of water molecules plays solvent effects rather than catalytic effects to this proton transfer process. The above results obtained with discrete water molecules were supported by the solvent continuum calculated data. It was also observed that the heavy dependence of the solvent continuum models on dipole moments may produce misleading results. © 2008 Wiley Periodicals, Inc. Int J Quantum Chem, 2009     

Deuterium isotope effect on 13C chemical shifts of tetrabutylammonium salts of Schiff bases amino acids

Deuterium isotope effects on 13C chemical shift of tetrabutylammonium salts of Schiff bases, derivatives of amino acids (glycine, L-alanine, L-phenylalanine, L-valine, L-leucine, L-isoleucine and L-methionine) and various ortho-hydroxyaldehydes in CDCl3 have been measured. The results have shown that the tetrabutylammonium salts of the Schiff bases amino acids, being derivatives of 2-hydroxynaphthaldehyde and 3,5-dibromosalicylaldehyde, exist in the NH-form, while in the derivatives of salicylaldehyde and 5-bromosalicylaldehyde a proton transfer takes place. The interactions between COO- and NH groups stabilize the proton-transferred form through a bifurcated intramolecular hydrogen bond.     

Influence of various salts on the reversed-phase retention of some dansylated amino acids in TLC

Summary The retention of 14 dansylated amino acid derivatives was determined using aqueous LiCl, NaCl, KCl, RbCl and CsCl solutions as eluents in reversed-phase thinlayer chromatography. The salts exerted typical salting-out effects, the retention of each dansylated amino acid increased with increasing concentration of salt in the eluent. This effect has been tentatively explained by the suppression of the dissociation of the polar groups in the solute molecules resulting in increased apparent lipophilicity. The correlation between the increased retention of dansyl amino acids and the salt concentration was found to be linear. The hydrated radii and energy of hydration of cations as well as the hydrophobicity of free amino acids and the pK value of the -amino groups simultaneously influenced the retention.     

Silicon amino acids

The existence and gas phase stability of silicon analogues of three natural amino acids (i.e., silicon glycine, silicon alanine, and silicon valine) belonging to the novel class of compounds termed silicon amino acids (SiAA) are investigated theoretically on the basis of ab initio QCISD/aug‐cc‐pVTZ and MP2/aug‐cc‐pVTZ calculations. All molecules studied (in their gas phase canonical forms) are structurally comparable to their proteinogenic counterparts (i.e., glycine, l ‐alanine, and l ‐valine) and capable of forming several structural isomers as such. These higher energy isomers are characterized by small relative energies (not exceeding 4 kcal mol⁻¹). The simulated IR spectra of the Si‐Gly, Si‐Ala, and Si‐Val global minima are also presented and discussed.     

Isotope effect in the formation of hydrogen peroxide by the sonolysis of light and heavy water

The kinetics of the formation of hydrogen peroxide by the sonolysis of light and heavy water in argon and oxygen atmospheres was investigated. The sonochemical reaction has a zero order with respect to hydrogen peroxide (H₂O₂, D₂O₂, or DHO₂). The measurement of the kinetic isotope effect (α), defined as the ratio of the reaction rates in H₂O and D₂O, carried out under argon gave a value of 2.2±0.3. The observed isotope effect decreases with an increase in the concentration of light water in H₂O−D₂O mixtures. No isotope effect is displayed in the oxygen atmosphere (α=1.05±0.10). The isotope effect is determined presumably by the mechanism of sonochemical decomposition of water molecules, which includes the H₂O−Ar^* and D₂O−Ar^* energy exchange (where Ar^* are argon atoms in the³P_2.0 excited state) in the nonequilibrium plasma generated by a shock wave, arising upon a cavitation collapse. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 4, pp. 645–649, April, 2000.     

Chemical properties of bile acids: III. Bile acid structure and solubility in water

The temperature dependence of the solubilities in water at pH 3.00 of a representative series of ten cholanoic acids (bile acids) were measured over the temperature range 10 to 50°C. The solubilities ranged from 5×10^–8M for 3-hydroxy-5-cholanoic acid (lithocholic acid) to 2×10^–3M for 3-7-12-trihydroxy-5-cholanoic acid (ursocholic acid). The solubilities increased with temperature and were found to be dependent on the number, position, and orientation of the hydroxyl groups. The hydroxyl groups affect solubility both by forming hydrogen bonds with the solvent and by reducing the hydrophobic area of the steroid nucleus. The enthalpic H⁰ and entropic S⁰ contributions to ⁰ associated with the dissolution process were obtained from the temperature dependence of the solubilities. A qualitative interpretation of the thermodynamic parameters in relation to bile acid structure is also presented.     

Sugar amino acids and related molecules: Some recent developments

To meet the growing demands for the development of new molecular entities for discovering new drugs and materials, organic chemists have started working on many new concepts that can help to assimilate knowledge-based structural diversities more efficiently than ever before. Emulating the basic principles followed by Nature to build its vast repertoire of biomolecules, organic chemists are developing many novel multifunctional building blocks and using them to create ‘nature-like’ and yet unnatural organic molecules. Sugar amino acids constitute an important class of such polyfunctional scaffolds where the carboxyl, amino and hydroxyl termini provide an excellent opportunity to organic chemists to create structural diversities akin to Nature’s molecular arsenal. In recent years, sugar amino acids have been used extensively in the area of peptidomimetic studies. Advances made in the area of combinatorial chemistry can provide the necessary technological support for rapid compilations of sugar amino acidbased libraries exploiting the diversities of their carbohydrate frameworks and well-developed solid-phase peptide synthesis methods. This perspective article chronicles some of the recent applications of various sugar amino acids, furan amino acids, pyrrole amino acids etc. and many other related building blocks in wide-ranging peptidomimetic studies     

Deuterium Isotope Effect on Solution Behavior of Thermoresponsive Star-Shaped Poly(2-isopropyl-2-oxazoline)

Thermosensitive star-shaped poly(2-isopropyl-2-oxazoline) (molar mass M≈21000 g mol^?1) in D₂O solution was studied by the static and dynamic light scattering methods. The behavior of the polymer investigated in deuterated water is similar qualitatively to that observed previously in undeuterated water. At the same time, the considerable quantitative changes of polymer behavior in D₂O were seen. Deuterium substitution of solvent affects the phase transition temperature by decreasing its value by 1°C. The temperature interval of phase transition in D₂O solution expands (by about 1°C) in comparison with that in H₂O solution.     

Thermodynamic parameters of the interaction of cryptand[222] with amino acids in water at 298.15 K

The interaction of cryptand[222] with amino acids in water, which is weak for most amino acids and controlled by the solvent effect in the case of non-polar amino acids, was studied at 298.15 K by the calorimetric method. Cryptand[222] undergoes selective complex formation with some polar and aromatic amino acids. The thermodynamic functions and equilibrium constants of complex formation of the macrocyclic ligand withl-histidine,l-threonine, andl-glutamine were calculated. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 12, pp. 2285–2288, December, 1999.     

Isotope effects on miscibility of 1-alkyl-3-methylimidazolium bis(trifluoromethyl)sulfonyl imides with aromatic hydrocarbons

The liquid–liquid miscibility temperatures as a function of composition and deuterium substitution have been experimentally determined for the binary mixtures of 1-decyl-3-methylimidazolium bis(trifluoromethyl)sulfonyl imide, [C₁₀MIM][NTf₂], and 1-dodecyl-3-methylimidazolium bis(trifluoromethyl)sulfonyl imide, [C₁₂MIM][NTf₂] with benzene and toluene and their deuterated forms. All systems exhibit upper critical solution temperatures (UCSTs) and better miscibility for ionic liquids with longer alkyl chain. The interchange of benzene for toluene results in worse miscibility for [C₁₀MIM][NTf₂] and better for [C₁₂MIM][NTf₂]. Deuteration of the aromatics leads to better miscibility in each case. The sign of the isotope effect is in agreement with expectations and its value seems to be seriously affected by the neighborhood of the hypercritical state.     

Synthesis of functionalized guanidino amino acids

We report the synthesis of guanidino amino acids (GuAA), which are structurally related to Arg and resemble a dipeptide consisting of alpha- and gamma-amino acid with a guanidinium group in the main chain. The compounds are available with different protecting groups in gram amounts and are intended as synthetic building blocks for the construction of synthetic oxoanion or peptide receptors. Tyr, Trp or dansyl-functionalized Lys can be introduced as the alpha-amino acid part, which leads to luminescent GuAAs. The compounds signal carboxylate binding in MeOH, DMSO and buffered water by change of the emission intensity. The property may find use in the construction of chemosensors.     

Heat-capacity changes and partial molal heat capacities of several amino acids in water

Integral enthalpies of solution of several amino acids in water at low concentrations have been determined at 25 and 35°C. These data have been used to derive the heat-capacity change C _p ^o on dissolution at 30°C. Partial molal heat capacities C _p2 ^o have been obtained by combining C _p ^o with C _p2 ^o (heat capacity of pure solid amino acids). The results indicate that the increments in C _p ^o and C _p2 ^o values per CH₂ group increment in the homologous series of -amino acids are constant and in agreement with those found for other homologous series of compounds containing monofunctional groups. However, this is not the case with amino acids having the NH ₃ ⁺ group at the terminal position. The present work also indicates that, as the NH ₃ ⁺ group is shifted away from the COO^– group, hydrophobic hydration decreases, as indicated by a decrease in C _p ^o and C _p2 ^o . the results on various isomers of amino acids show that branching of alkyl groups has no effect on C _p ^o and C _p2 ^o , indicating that hydrophobic hydration is unaffected by branching. The effect of substitution of H by OH and of CH₃ by groups in some amino acids has also been studied and discussed.     

Synthesis of phosphinic and phosphonic analogs of aromatic amino acids

The reaction of aryl and aralkyl aldoximes with hypophosphorous acid resulted in aminophosphinic acids, which were oxidized into the corresponding aminophosphonic acids. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 1, pp. 137–140, January, 1997.