3‐Cyano‐6‐hydroxy‐4‐methyl‐2‐pyridone: two new pseudopolymorphs and two cocrystals with products of an in situ nucleophilic aromatic substitution

Four crystal structures of 3‐cyano‐6‐hydroxy‐4‐methyl‐2‐pyridone (CMP), viz. the dimethyl sulfoxide monosolvate, C₇H₆N₂O₂·C₂H₆OS, (1), the N,N‐dimethylacetamide monosolvate, C₇H₆N₂O₂·C₄H₉NO, (2), a cocrystal with 2‐amino‐4‐dimethylamino‐6‐methylpyrimidine (as the salt 2‐amino‐4‐dimethylamino‐6‐methylpyrimidin‐1‐ium 5‐cyano‐4‐methyl‐6‐oxo‐1,6‐dihydropyridin‐2‐olate), C₇H₁₃N₄⁺·C₇H₅N₂O₂⁻, (3), and a cocrystal with N,N‐dimethylacetamide and 4,6‐diamino‐2‐dimethylamino‐1,3,5‐triazine [as the solvated salt 2,6‐diamino‐4‐dimethylamino‐1,3,5‐triazin‐1‐ium 5‐cyano‐4‐methyl‐6‐oxo‐1,6‐dihydropyridin‐2‐olate–N,N‐dimethylacetamide (1/1)], C₅H₁₁N₆⁺·C₇H₅N₂O₂⁻·C₄H₉NO, (4), are reported. Solvates (1) and (2) both contain the hydroxy group in a para position with respect to the cyano group of CMP, acting as a hydrogen‐bond donor and leading to rather similar packing motifs. In cocrystals (3) and (4), hydrolysis of the solvent molecules occurs and an in situ nucleophilic aromatic substitution of a Cl atom with a dimethylamino group has taken place. Within all four structures, an R₂²(8) N—H...O hydrogen‐bonding pattern is observed, connecting the CMP molecules, but the pattern differs depending on which O atom participates in the motif, either the ortho or para O atom with respect to the cyano group. Solvents and coformers are attached to these arrangements via single‐point O—H...O interactions in (1) and (2) or by additional R₄⁴(16) hydrogen‐bonding patterns in (3) and (4). Since the in situ nucleophilic aromatic substitution of the coformers occurs, the possible Watson–Crick C–G base‐pair‐like arrangement is inhibited, yet the cyano group of the CMP molecules participates in hydrogen bonds with their coformers, influencing the crystal packing to form chains.     

Complete experimental and theoretical proton and carbon nuclear magnetic resonance spectral assignments,molecular structure and conformational study of 1‐cyclohexylpiperazine and 1‐(4‐pyridyl)piperazine

The possible stable forms and molecular structures of 1‐cyclohexylpiperazine (1‐chpp) and 1‐(4‐pyridyl)piperazine (1‐4pypp) molecules have been studied experimentally and theoretically using nuclear magnetic resonance(NMR) spectroscopy. ¹³C, ¹⁵N cross‐polarization magic‐angle spinning NMR and liquid phase¹H, ¹³C, DEPT, COSY, HETCOR and INADEQUATE NMR spectra of 1‐chpp (C₁₀H₂₀N₂) and 1‐4pypp (C₉H₁₃N₂) have been reported. Solvent effects on nuclear magnetic shielding tensors have been investigated using CDCl₃, CD₃ OD, dimethylsulfoxide (DMSO)‐d₆, (CD₃)₂CO, D₂O and CD₂Cl₂. ¹H and ¹³C NMR chemical shifts have been calculated for the most stable two conformers, equatorial–equatorial (e–e) and axial–equatorial (a–e) forms of 1‐chpp and 1‐4pypp using B3LYP/6‐311++G(d,p)//6‐31G(d) level of theory. Results from experimental and theoretical data showed that the molecular geometry and the mole fractions of stable conformers of both molecules are solvent dependent. Copyright © 2009 John Wiley & Sons, Ltd.     

π–π stacking motifs in dialkylbis{5‐[(E)‐2‐aryldiazen‐1‐yl]‐2‐hydroxybenzoato}tin(IV) complexes

The diorganotin(IV) complexes of 5‐[(E)‐2‐aryldiazen‐1‐yl]‐2‐hydroxybenzoic acid are of interest because of their structural diversity in the crystalline state and their interesting biological activity. The structures of dimethylbis{2‐hydroxy‐5‐[(E)‐2‐(4‐methylphenyl)diazen‐1‐yl]benzoato}tin(IV), [Sn(CH₃)₂(C₁₄H₁₁N₂O₃)₂], and di‐n‐butylbis{2‐hydroxy‐5‐[(E)‐2‐(4‐methylphenyl)diazen‐1‐yl]benzoato}tin(IV) benzene hemisolvate, [Sn(C₄H₉)₂(C₁₄H₁₁N₂O₃)₂]·0.5C₆H₆, exhibit the usual skew‐trapezoidal bipyramidal coordination geometry observed for related complexes of this class. Each structure has two independent molecules of the Sn^IV complex in the asymmetric unit. In the dimethyltin structure, intermolecular O—H…O hydrogen bonds and a very weak Sn…O interaction link the independent molecules into dimers. The planar carboxylate ligands lend themselves to π–π stacking interactions and the diversity of supramolecular structural motifs formed by these interactions has been examined in detail for these two structures and four closely related analogues. While there are some recurring basic motifs amongst the observed stacking arrangements, such as dimers and step‐like chains, variations through longitudinal slipping and inversion of the direction of the overlay add complexity. The π–π stacking motifs in the two title complexes are combinations of some of those observed in the other structures and are the most complex of the structures examined.     

Copper(II) bromide,nitrate and perchlorate complexes with sterically demanding N‐(6‐methylpyridin‐2‐yl)acetamide ligands

Functionalized acid amides are widely used in biology, medicine, environmental chemistry and many other areas. Among them, pyridine‐substituted amides, in particular N‐(pyridin‐2‐yl)acetamide and its derivatives, play an important role due to their excellent chelating properties. The donor properties of these ligands can be effectively modified by introducing electron‐donating substituents (e.g. alkyl groups) into the heterocycle. On the other hand, substituents in the α‐position of the pyridine ring can create steric hindrance, which significantly influences the coordination number and geometry. To achieve a better understanding of these effects, copper(II) complexes with sterically demanding N‐(6‐methylpyridin‐2‐yl)acetamide ligands (L ) and monoanions of different size, shape and coordination ability have been chosen as model compounds. The crystal structures of three new compounds, bromidobis[N‐(6‐methylpyridin‐2‐yl‐κN )acetamide‐κO ]copper(II) bromide, [CuBr(C₈H₁₀N₂O)]Br, (I), aquabis[N‐(6‐methylpyridin‐2‐yl‐κN )acetamide‐κO ]copper(II) dinitrate, [Cu(C₈H₁₀N₂O)(H₂O)](NO₃)₂, (II), and aquabis[N‐(6‐methylpyridin‐2‐yl‐κN )acetamide‐κO ]copper(II) bis(perchlorate), [Cu(C₈H₁₀N₂O)(H₂O)](ClO₄)₂, (III), have been determined by single‐crystal X‐ray diffraction analysis. It has been shown that the presence of the 6‐methyl group results in either a distorted square‐pyramidal or a distorted trigonal–bipyramidal coordination geometry around the Cu^II centres instead of the typical octahedral geometry observed when the methyl substituent is absent or occupies any other position on the pyridine ring. Moreover, due to the steric hindrance provided by the L ligands, only the bromide ligand, the smallest of the series, enters into the first coordination sphere of the Cu^II ion in (I). In (II) and (III), the vacant coordination site of the Cu^II ion is occupied by a water molecule, while the nitrate and perchlorate anions are not involved in coordination to the metal centre. The structures of (I)–(III) are characterized by the presence of one‐dimensional infinite chains formed by hydrogen bonds of the types N—H…Br [in (I)], N—H…O and O—H…O [in (II) and (III)] between the amide groups of the L ligands, the coordinated water molecules and the uncoordinated anions. The hydrogen‐bonded chains are further interconnected through π–π stacking interactions between the pyridine rings of the L ligands, with approximate interplanar separations of 3.5–3.6 Å.     

6‐Chloroisocytosine and 5‐bromo‐6‐methylisocytosine: again,one or two tautomers present in the same crystal?

It is well known that pyrimidin‐4‐one derivatives are able to adopt either the 1H‐ or the 3H‐tautomeric form in (co)crystals, depending on the coformer. As part of ongoing research to investigate the preferred hydrogen‐bonding patterns of active pharmaceutical ingredients and their model systems, 2‐amino‐6‐chloropyrimidin‐4‐one and 2‐amino‐5‐bromo‐6‐methylpyrimidin‐4‐one have been cocrystallized with several coformers and with each other. Since Cl and Br atoms both have versatile possibilities to interact with the coformers, such as via hydrogen or halogen bonds, their behaviour within the crystal packing was also of interest. The experiments yielded five crystal structures, namely 2‐aminopyridin‐1‐ium 2‐amino‐6‐chloro‐4‐oxo‐4H‐pyrimidin‐3‐ide–2‐amino‐6‐chloropyrimidin‐4(3H)‐one (1/3), C₅H₇N₂⁺·C₄H₃ClN₃O⁻·3C₄H₄ClN₃O, (Ia), 2‐aminopyridin‐1‐ium 2‐amino‐6‐chloro‐4‐oxo‐4H‐pyrimidin‐3‐ide–2‐amino‐6‐chloropyrimidin‐4(3H)‐one–2‐aminopyridine (2/10/1), 2C₅H₇N₂⁺·2C₄H₃ClN₃O⁻·10C₄H₄ClN₃O·C₅H₆N₂, (Ib), the solvent‐free cocrystal 2‐amino‐5‐bromo‐6‐methylpyrimidin‐4(3H)‐one–2‐amino‐5‐bromo‐6‐methylpyrimidin‐4(1H)‐one (1/1), C₅H₆BrN₃O·C₅H₆BrN₃O, (II), the solvate 2‐amino‐5‐bromo‐6‐methylpyrimidin‐4(3H)‐one–2‐amino‐5‐bromo‐6‐methylpyrimidin‐4(1H)‐one–N‐methylpyrrolidin‐2‐one (1/1/1), C₅H₆BrN₃O·C₅H₆BrN₃O·C₅H₉NO, (III), and the partial cocrystal 2‐amino‐5‐bromo‐6‐methylpyrimidin‐4(3H)‐one–2‐amino‐5‐bromo‐6‐methylpyrimidin‐4(1H)‐one–2‐amino‐6‐chloropyrimidin‐4(3H)‐one (0.635/1/0.365), C₅H₆BrN₃O·C₅H₆BrN₃O·C₄H₄ClN₃O, (IV). All five structures show R₂²(8) hydrogen‐bond‐based patterns, either by synthon 2 or by synthon 3, which are related to the Watson–Crick base pairs.     

Synthesis and characterization of a cadmium(II)–organic supramolecular coordination compound based on the multifunctional 2‐amino‐5‐sulfobenzoic acid ligand

Much attention has been paid by chemists to the construction of supramolecular coordination compounds based on the multifunctional ligand 5‐sulfosalicylic acid (H₃SSA) due to the structural and biological interest of these compounds. However, no coordination compounds have been reported for the multifunctional amino‐substituted sulfobenzoate ligand 2‐amino‐5‐sulfobenzoic acid (H₂asba). We expected that H₂asba could be a suitable building block for the assembly of supramolecular networks due to its interesting structural characteristics. The reaction of cadmium(II) nitrate with H₂asba in the presence of the auxiliary flexible dipyridylamide ligand N,N′‐bis[(pyridin‐4‐yl)methyl]oxamide (4bpme) under ambient conditions formed a new mixed‐ligand coordination compound, namely bis(3‐amino‐4‐carboxybenzenesulfonato‐κO¹)diaquabis{N,N′‐bis[(pyridin‐4‐yl)methyl]oxamide‐κN}cadmium(II)–N,N′‐bis[(pyridin‐4‐yl)methyl]oxamide–water (1/1/4), [Cd(C₇H₆NO₅S)₂(C₁₄H₁₄N₄O₂)₂(H₂O)₂]·C₁₄H₁₄N₄O₂·4H₂O, (1), which was characterized by single‐crystal and powder X‐ray diffraction analysis (PXRD), FT–IR spectroscopy, thermogravimetric analysis (TG), and UV–Vis and photoluminescence spectroscopic analyses in the solid state. The central Cd^II atom in (1) occupies a special position on a centre of inversion and exhibits a slightly distorted octahedral geometry, being coordinated by two N atoms from two monodentate 4bpme ligands, four O atoms from two monodentate 4‐amino‐3‐carboxybenzenesulfonate (Hasba⁻) ligands and two coordinated water molecules. Interestingly, complex (1) further extends into a threefold polycatenated 0D→2D (0D is zero‐dimensional and 2D is two‐dimensional) interpenetrated supramolecular two‐dimensional (4,4) layer through intermolecular hydrogen bonding. The interlayer hydrogen bonding further links adjacent threefold polycatenated two‐dimensional layers into a three‐dimensional network. The optical properties of complex (1) indicate that it may be used as a potential indirect band gap semiconductor material. Complex (1) exhibits an irreversible dehydration–rehydration behaviour. The fluorescence properties have also been investigated in the solid state at room temperature.     

A three‐dimensional hydrogen‐bonded framework in 2‐amino‐6‐(N‐methylanilino)pyrimidin‐4(3H)‐one and a ribbon of fused hydrogen‐bonded rings in 2‐amino‐6‐(N‐methylanilino)‐5‐nitropyrimidin‐4(3H)‐one

The molecular dimensions of both 2‐amino‐6‐(N‐methylanilino)pyrimidin‐4(3H)‐one, C₁₁H₁₂N₄O, (I), and 2‐amino‐6‐(N‐methylanilino)‐5‐nitropyrimidin‐4(3H)‐one, C₁₁H₁₁N₅O₃, (II), are consistent with considerable polarization of the molecular–electronic structures. The molecules of (I) are linked into a three‐dimensional framework by a combination of one N—H...N hydrogen bond, two independent N—H...O hydrogen bonds and one C—H...π(arene) hydrogen bond. The molecules of (II) are linked into ribbons containing three types of edge‐fused ring by the combination of two independent three‐centre N—H...(O)₂ hydrogen bonds.     

Study of Microheterogeneity in Acetonitrile–Water Binary Mixtures by using Polarity‐Resolved Solvation Dynamics

The solvation dynamics of three coumarin dyes with widely varying polarities were studied in acetonitrile–water (ACN–H₂O) mixtures across the entire composition range. At low ACN concentrations [ACN mole fractions (X_ACN)≤0.1], the solvation dynamics are fast (<40 ps), indicating a nearly homogeneous environment. This fast region is followed by a sudden retardation of the average solvation time (230–1120 ps) at higher ACN concentrations (X_ACN≈0.2), thus indicating the onset of nonideality within the mixture that continues until X_ACN≈0.8. This nonideality regime (X_ACN≈0.2–0.8) comprises of multiple dye‐dependent anomalous regions. At very high ACN concentrations (X_ACN≈0.8–1), the ACN–H₂O mixtures regain homogeneity, with faster solvation times. The source of the inherent nonideality of the ACN–H₂O mixtures is a subject of debate. However, a careful examination of the widths of time‐resolved emission spectra shows that the origin of the slow dynamics may be due to the diffusion of polar solvent molecules into the first solvation shell of the excited coumarin dipole.     

Unusual hydrate stabilization in the two‐dimensional layered structure of quinacrinium bis(2‐carboxy‐4,5‐dichlorobenzoate) tetrahydrate,a proton‐transfer compound of the drug quinacrine

The crystal structure of the hydrated proton‐transfer compound of the drug quinacrine [rac‐N′‐(6‐chloro‐2‐methoxyacridin‐9‐yl)‐N,N‐diethylpentane‐1,4‐diamine] with 4,5‐dichlorophthalic acid, C₂₃H₃₂ClN₃O²⁺·2C₈H₃Cl₂O₄⁻·4H₂O, has been determined at 200 K. The four labile water molecules of solvation in the structure form discrete ...O—H...O—H... hydrogen‐bonded chains parallel to the quinacrine side chain, the two N—H groups of which act as hydrogen‐bond donors for two of the water acceptor molecules. The other water molecules, as well as the acridinium H atom, also form hydrogen bonds with the two anion species and extend the structure into two‐dimensional sheets. Between these sheets there are also weak cation–anion and anion–anion π–π aromatic ring interactions. This structure represents the third example of a simple quinacrine derivative for which structural data are available but differs from the other two in that it is unstable in the X‐ray beam due to efflorescence, probably associated with the destruction of the unusual four‐membered water chain structures.     

6‐Propyl‐2‐thiouracil versus 6‐methoxymethyl‐2‐thiouracil: enhancing the hydrogen‐bonded synthon motif by replacement of a methylene group with an O atom

The understanding of intermolecular interactions is a key objective of crystal engineering in order to exploit the derived knowledge for the rational design of new molecular solids with tailored physical and chemical properties. The tools and theories of crystal engineering are indispensable for the rational design of (pharmaceutical) cocrystals. The results of cocrystallization experiments of the antithyroid drug 6‐propyl‐2‐thiouracil (PTU) with 2,4‐diaminopyrimidine (DAPY), and of 6‐methoxymethyl‐2‐thiouracil (MOMTU) with DAPY and 2,4,6‐triaminopyrimidine (TAPY), respectively, are reported. PTU and MOMTU show a high structural similarity and differ only in the replacement of a methylene group (–CH₂–) with an O atom in the side chain, thus introducing an additional hydrogen‐bond acceptor in MOMTU. Both molecules contain an ADA hydrogen‐bonding site (A = acceptor and D = donor), while the coformers DAPY and TAPY both show complementary DAD sites and therefore should be capable of forming a mixed ADA/DAD synthon with each other, i.e. N—H…O, N—H…N and N—H…S hydrogen bonds. The experiments yielded one solvated cocrystal salt of PTU with DAPY, four different solvates of MOMTU, one ionic cocrystal of MOMTU with DAPY and one cocrystal salt of MOMTU with TAPY, namely 2,4‐diaminopyrimidinium 6‐propyl‐2‐thiouracilate–2,4‐diaminopyrimidine–N,N‐dimethylacetamide–water (1/1/1/1) (the systematic name for 6‐propyl‐2‐thiouracilate is 6‐oxo‐4‐propyl‐2‐sulfanylidene‐1,2,3,6‐tetrahydropyrimidin‐1‐ide), C₄H₇N₄⁺·C₇H₉N₂OS⁻·C₄H₆N₄·C₄H₉NO·H₂O, (I), 6‐methoxymethyl‐2‐thiouracil–N,N‐dimethylformamide (1/1), C₆H₈N₂O₂S·C₃H₇NO, (II), 6‐methoxymethyl‐2‐thiouracil–N,N‐dimethylacetamide (1/1), C₆H₈N₂O₂S·C₄H₉NO, (III), 6‐methoxymethyl‐2‐thiouracil–dimethyl sulfoxide (1/1), C₆H₈N₂O₂S·C₂H₆OS, (IV), 6‐methoxymethyl‐2‐thiouracil–1‐methylpyrrolidin‐2‐one (1/1), C₆H₈N₂O₂S·C₅H₉NO, (V), 2,4‐diaminopyrimidinium 6‐methoxymethyl‐2‐thiouracilate (the systematic name for 6‐methoxymethyl‐2‐thiouracilate is 4‐methoxymethyl‐6‐oxo‐2‐sulfanylidene‐1,2,3,6‐tetrahydropyrimidin‐1‐ide), C₄H₇N₄⁺·C₆H₇N₂O₂S⁻, (VI), and 2,4,6‐triaminopyrimidinium 6‐methoxymethyl‐2‐thiouracilate–6‐methoxymethyl‐2‐thiouracil (1/1), C₄H₈N₅⁺·C₆H₇N₂O₂S⁻·C₆H₈N₂O₂S, (VII). Whereas in (I) only an AA/DD hydrogen‐bonding interaction was formed, the structures of (VI) and (VII) both display the desired ADA/DAD synthon. Conformational studies on the side chains of PTU and MOMTU also revealed a significant deviation for cocrystals (VI) and (VII), leading to the desired enhancement of the hydrogen‐bond pattern within the crystal.     

Two ZnII mononuclear coordination compounds with pyridinedicarboxylate and auxiliary N‐(pyridin‐4‐ylmethylidene)hydroxylamine ligands

Two new mononuclear coordination compounds, bis{4‐[(hydroxyimino)methyl]pyridinium} diaquabis(pyridine‐2,5‐dicarboxylato‐κ²N,O²)zincate(II), (C₆H₇N₂O)₂[Zn(C₇H₃NO₄)₂(H₂O)₂], (1), and (pyridine‐2,6‐dicarboxylato‐κ³O²,N,O⁶)bis[N‐(pyridin‐4‐ylmethylidene‐κN)hydroxylamine]zinc(II), [Zn(C₇H₃NO₄)(C₆H₆N₂O)₂], (2), have been synthesized and characterized by single‐crystal X‐ray diffractometry. The centrosymmetric Zn^II cation in (1) is octahedrally coordinated by two chelating pyridine‐2,5‐dicarboxylate ligands and by two water molecules in a distorted octahedral geometry. In (2), the Zn^II cation is coordinated by a tridentate pyridine‐2,6‐dicarboxylate dianion and by two N‐(pyridin‐4‐ylmethylidene)hydroxylamine molecules in a distorted C₂‐symmetric trigonal bipyramidal coordination geometry.     

Solid‐state conformations of linear depsipeptide amides with an alternating sequence of α,α‐disubstituted α‐amino acid and α‐hydroxy acid

Depsipeptides and cyclodepsipeptides are analogues of the corresponding peptides in which one or more amide groups are replaced by ester functions. Reports of crystal structures of linear depsipeptides are rare. The crystal structures and conformational analyses of four depsipeptides with an alternating sequence of an α,α‐disubstituted α‐amino acid and an α‐hydroxy acid are reported. The molecules in the linear hexadepsipeptide amide in (S)‐Pms‐Acp‐(S)‐Pms‐Acp‐(S)‐Pms‐Acp‐NMe₂ acetonitrile solvate, C₄₇H₅₈N₄O₉·C₂H₃N, ( 3b ), as well as in the related linear tetradepsipeptide amide (S)‐Pms‐Aib‐(S)‐Pms‐Aib‐NMe₂, C₂₈H₃₇N₃O₆, ( 5a ), the diastereoisomeric mixture (S,R)‐Pms‐Acp‐(R,S)‐Pms‐Acp‐NMe₂/(R,S)‐Pms‐Acp‐(R,S)‐Pms‐Acp‐NMe₂ (1:1), C₃₂H₄₁N₃O₆, ( 5b ), and (R,S)‐Mns‐Acp‐(S,R)‐Mns‐Acp‐NMe₂, C₃₀H₃₇N₃O₆, ( 5c ) (Pms is phenyllactic acid, Acp is 1‐aminocyclopentanecarboxylic acid and Mns is mandelic acid), generally adopt a β‐turn conformation in the solid state, which is stabilized by intramolecular N—H…O hydrogen bonds. Whereas β‐turns of type I (or I′) are formed in the cases of ( 3b ), ( 5a ) and ( 5b ), which contain phenyllactic acid, the torsion angles for ( 5c ), which incorporates mandelic acid, indicate a β‐turn in between type I and type III. Intermolecular N—H…O and O—H…O hydrogen bonds link the molecules of ( 3a ) and ( 5b ) into extended chains, and those of ( 5a ) and ( 5c ) into two‐dimensional networks.     

Heterocyclic tautomerism: reassignment of two crystal structures of 2‐amino‐1,3‐thiazolidin‐4‐one derivatives

The structures of 5‐(2‐hydroxyethyl)‐2‐[(pyridin‐2‐yl)amino]‐1,3‐thiazolidin‐4‐one, C₁₀H₁₁N₃O₂S, (I), and ethyl 4‐[(4‐oxo‐1,3‐thiazolidin‐2‐yl)amino]benzoate, C₁₂H₁₂N₂O₃S, (II), which are identical to the entries with refcodes GACXOZ [Váňa et al. (2009). J. Heterocycl. Chem. 46 , 635–639] and HEGLUC [Behbehani & Ibrahim (2012). Molecules, 17 , 6362–6385], respectively, in the Cambridge Structural Database [Allen (2002). Acta Cryst. B 58 , 380–388], have been redetermined at 130 K. This structural study shows that both investigated compounds exist in their crystal structures as the tautomer with the carbonyl–imine group in the five‐membered heterocyclic ring and an exocyclic amine N atom, rather than the previously reported tautomer with a secondary amide group and an exocyclic imine N atom. The physicochemical and spectroscopic data of the two investigated compounds are the same as those of GACXOZ and HEGLUC, respectively. In the thiazolidin‐4‐one system of (I), the S and chiral C atoms, along with the hydroxyethyl group, are disordered. The thiazolidin‐4‐one fragment takes up two alternative locations in the crystal structure, which allows the molecule to adopt R and S configurations. The occupancy factors of the disordered atoms are 0.883 (2) (for the R configuration) and 0.117 (2) (for the S configuration). In (I), the main factor that determines the crystal packing is a system of hydrogen bonds, involving both strong N—H...N and O—H...O and weak C—H...O hydrogen bonds, linking the molecules into a three‐dimensional hydrogen‐bond network. On the other hand, in (II), the molecules are linked via N—H...O hydrogen bonds into chains.     

Experimental and computational studies on a new mixed ligand oxido–rhenium(V) compound

A mixed ligand oxido–rhenium(V) complex, [ReOS₃(HL)]Cl.H₂O ( 1p Cl.H₂O), with 3‐thiopentane‐1,5‐dithiolato (S₃) as a tridentate ligand and imidazolidinethione (HL) as an ancillary monodentate sulfur donor co‐ligand, has been synthesized. 1p Cl.H₂O has been characterized by spectral analyses. The X‐ray crystal structure of 1p Cl.H₂O shows that the complex contains a distorted square‐pyramidal “ReOS₄” core. The structural parameters agree with our optimized structure of 1p ⁺. Subsequently, the optimized structure was used to calculate systematically the relative stabilities of a sequence of oxido–Re(V) and the analogous oxido–Tc(V) complexes just by varying the donor sites (N, S, and O) on the tridentate ligand moiety in 1p ⁺. Electrochemical studies on 1p Cl.H₂O show an oxidative rhenium(VI)/ rhenium(V) couple at 1.561 V versus Ag/AgCl under controlled linear diffusion situation. Vibrational frequencies, electronic structures, and redox potential of 1p ⁺ have been calculated theoretically employing density functional theory (DFT) or time‐dependent‐DFT methods. The experimental findings are in excellent agreement with the computed results. The calculated redox potentials of the investigated oxido–Re(V) complexes and their oxido–Tc(V) counterparts are shown to correlate linearly with their respective chemical potential values.     

Synthesis,structure and characterization of five new organically templated metal sulfates with 2‐aminopyridinium

The chemistry of organically templated metal sulfates has attracted interest from the materials science community and the development of synthetic strategies for the preparation of organic–inorganic hybrid materials with novel structures and special properties is of current interest. Sulfur–oxygen–metal linkages provide the possibility of using sulfate tetrahedra as building units to form new solid‐state materials. A series of novel organically templated metal sulfates of 2‐aminopyridinium (2ap) with aluminium(III), cobalt(II), magnesium(II), nickel(II) and zinc(II) were obtained from the respective aqueous solutions and studied by single‐crystal X‐ray diffraction. The compounds crystallize in centrosymmetric triclinic unit cells in three structure types: type 1 for 2‐aminopyridinium hexaaquaaluminium(III) bis(sulfate) tetrahydrate, (C₅H₇N₂)[Al(H₂O)₆](SO₄)₂·4H₂O, (I); type 2 for bis(2‐aminopyridinium) tris[hexaaquacobalt(II)] tetrakis(sulfate) dihydrate, (C₅H₇N₂)₂[Co(H₂O)₆]₃(SO₄)₄·2H₂O, (II), and bis(2‐aminopyridinium) tris[hexaaquamagnesium(II)] tetrakis(sulfate) dihydrate, (C₅H₇N₂)₂[Mg(H₂O)₆]₃(SO₄)₄·2H₂O, (III); and type 3 for bis(2‐aminopyridinium) hexaaquanickel(II) bis(sulfate), (C₅H₇N₂)₂[Ni(H₂O)₆](SO₄)₂, (IV), and bis(2‐aminopyridinium) hexaaquazinc(II) bis(sulfate), (C₅H₇N₂)₂[Zn(H₂O)₆](SO₄)₂, (V). The templating role of the 2ap cation in all of the reported crystalline substances is governed by the formation of characteristic charge‐assisted hydrogen‐bonded pairs with sulfate anions and the presence of π–π interactions between the cations. Additionally, both coordinated and uncoordinated water molecules are involved in hydrogen‐bond formation. As a consequence, extensive three‐dimensional hydrogen‐bonding patterns are formed in the reported crystal structures.     

Sulfur as hydrogen‐bond acceptor in cocrystals of 2‐thio‐modified thymine

Doubly and triply hydrogen‐bonded supramolecular synthons are of particular interest for the rational design of crystal and cocrystal structures in crystal engineering since they show a high robustness due to their high stability and good reliability. The compound 5‐methyl‐2‐thiouracil (2‐thiothymine) contains an ADA hydrogen‐bonding site (A = acceptor and D = donor) if the S atom is considered as an acceptor. We report herein the results of cocrystallization experiments with the coformers 2,4‐diaminopyrimidine, 2,4‐diamino‐6‐phenyl‐1,3,5‐triazine, 6‐amino‐3H‐isocytosine and melamine, which contain complementary DAD hydrogen‐bonding sites and, therefore, should be capable of forming a mixed ADA–DAD N—H…S/N—H…N/N—H…O synthon (denoted synthon 3s_{N·S;N·N;N·O}), consisting of three different hydrogen bonds with 5‐methyl‐2‐thiouracil. The experiments yielded one cocrystal and five solvated cocrystals, namely 5‐methyl‐2‐thiouracil–2,4‐diaminopyrimidine (1/2), C₅H₆N₂OS·2C₄H₆N₄, (I), 5‐methyl‐2‐thiouracil–2,4‐diaminopyrimidine–N,N‐dimethylformamide (2/2/1), 2C₅H₆N₂OS·2C₄H₆N₄·C₃H₇NO, (II), 5‐methyl‐2‐thiouracil–2,4‐diamino‐6‐phenyl‐1,3,5‐triazine–N,N‐dimethylformamide (2/2/1), 2C₅H₆N₂OS·2C₉H₉N₅·C₃H₇NO, (III), 5‐methyl‐2‐thiouracil–6‐amino‐3H‐isocytosine–N,N‐dimethylformamide (2/2/1), (IV), 2C₅H₆N₂OS·2C₄H₆N₄O·C₃H₇NO, (IV), 5‐methyl‐2‐thiouracil–6‐amino‐3H‐isocytosine–N,N‐dimethylacetamide (2/2/1), 2C₅H₆N₂OS·2C₄H₆N₄O·C₄H₉NO, (V), and 5‐methyl‐2‐thiouracil–melamine (3/2), 3C₅H₆N₂OS·2C₃H₆N₆, (VI). Synthon 3s_{N·S;N·N;N·O} was formed in three structures in which two‐dimensional hydrogen‐bonded networks are observed, while doubly hydrogen‐bonded interactions were formed instead in the remaining three cocrystals whereby three‐dimensional networks are preferred. As desired, the S atoms are involved in hydrogen‐bonding interactions in all six structures, thus illustrating the ability of sulfur to act as a hydrogen‐bond acceptor and, therefore, its value for application in crystal engineering.     

Pseudopolymorphism in brucine: brucine–water (1/2), the third crystal hydrate of brucine

The structure of a third pseudopolymorphic hydrate of brucine, brucine–water (1/2) [systematic name: 2,3‐dimethoxystrychnidin‐10‐one–water (1/2)], C₂₃H₂₆N₂O₄·2H₂O, has been determined at 130 K. The asymmetric unit comprises two independent brucine molecules and four water molecules of solvation. The four water molecules form uncommon cyclic hydrogen‐bonded homomolecular R₄⁴(8) tetramer rings, which then form primary hydrogen‐bonded chain substructures extending down the 2₁ screw axis in the unit cell. The two brucine molecules are linked peripherally to these substructures by either single O—H...N_brucine or asymmetric three‐centre O—H...O_brucine hydrogen bonds.     

Cobalt(II) chloride complexes with 1,1′‐dimethyl‐4,4′‐bipyrazole featuring first‐ and second‐sphere coordination of the ligand

In catena‐poly[[dichloridocobalt(II)]‐μ‐(1,1′‐dimethyl‐4,4′‐bipyrazole‐κ²N²:N^2′)], [CoCl₂(C₈H₁₀N₄)]_n, (1), two independent bipyrazole ligands (Me₂bpz) are situated across centres of inversion and in tetraaquabis(1,1′‐dimethyl‐4,4′‐bipyrazole‐κN²)cobalt(II) dichloride–1,1′‐dimethyl‐4,4′‐bipyrazole–water (1/2/2), [Co(C₈H₁₀N₄)₂(H₂O)₄]Cl₂·2C₈H₁₀N₄·2H₂O, (2), the Co²⁺ cation lies on an inversion centre and two noncoordinated Me₂bpz molecules are also situated across centres of inversion. The compounds are the first complexes involving N,N′‐disubstituted 4,4′‐bipyrazole tectons. They reveal a relatively poor coordination ability of the ligand, resulting in a Co–pyrazole coordination ratio of only 1:2. Compound (1) adopts a zigzag chain structure with bitopic Me₂bpz links between tetrahedral Co^II ions. Interchain interactions occur by means of very weak C—H...Cl hydrogen bonding. Complex (2) comprises discrete octahedral trans‐[Co(Me₂bpz)₂(H₂O)₄]²⁺ cations formed by monodentate Me₂bpz ligands. Two equivalents of additional noncoordinated Me₂bpz tectons are important as `second‐sphere ligands' connecting the cations by means of relatively strong O—H...N hydrogen bonding with generation of doubly interpenetrated pcu (α‐Po) frameworks. Noncoordinated chloride anions and solvent water molecules afford hydrogen‐bonded [(Cl⁻)₂(H₂O)₂] rhombs, which establish topological links between the above frameworks, producing a rare eight‐coordinated uninodal net of {4²⁴.5.6³} ( ilc ) topology.     

Syntheses and structures of four new mixed‐amide phosphoric triamides

Phosphoric triamides have extensive applications in biochemistry and are also used as O‐donor ligands. Four new mixed‐amide phosphoric triamide structures, namely rac‐N‐tert‐butyl‐N′,N′′‐dicyclohexyl‐N′′‐methylphosphoric triamide, C₁₇H₃₆N₃OP, (I), rac‐N,N′‐dicyclohexyl‐N′‐methyl‐N′′‐(p‐tolyl)phosphoric triamide, C₂₀H₃₄N₃OP, (II), N,N′,N′′‐tricyclohexyl‐N′′‐methylphosphoric triamide, C₁₉H₃₈N₃OP, (III), and 2‐[cyclohexyl(methyl)amino]‐5,5‐dimethyl‐1,3,2λ⁵‐diazaphosphinan‐2‐one, C₁₂H₂₆N₃OP, (IV), have been synthesized and studied by X‐ray diffraction and spectroscopic methods. Structures (I) and (II) are the first diffraction studies of acyclic racemic mixed‐amide phosphoric triamides. The P—N bonds resulting from the different substituent –N(CH₃)(C₆H₁₁), (C₆H₁₁)NH–, 4‐CH₃‐C₆H₄NH–, (tert‐C₄H₉)NH– and –NHCH₂C(CH₃)₂CH₂NH– groups are compared, along with the different molecular volumes and electron‐donor strengths. In all four structures, the molecules form extended chains through N—H…O hydrogen bonds.     

Exo conformers of N‐(pyridin‐2‐yl)‐ and N‐(pyridin‐3‐yl)norbornene‐5,6‐dicarboximide crystals

Two isomeric pyridine‐substituted norbornenedicarboximide derivatives, namely N‐(pyridin‐2‐yl)‐exo‐norbornene‐5,6‐dicarboximide, (I), and N‐(pyridin‐3‐yl)‐exo‐norbornene‐5,6‐dicarboximide, (II), both C₁₄H₁₂N₂O₄, have been crystallized and their structures unequivocally determined by single‐crystal X‐ray diffraction. The molecules consist of norbornene moieties fused to a dicarboximide ring substituted at the N atom by either pyridin‐2‐yl or pyridin‐3‐yl in an anti configuration with respect to the double bond, thus affording exo isomers. In both compounds, the asymmetric unit consists of two independent molecules (Z′ = 2). In compound (I), the pyridine rings of the two independent molecules adopt different conformations, i.e. syn and anti, with respect to the methylene bridge. The intermolecular contacts of (I) are dominated by C—H...O interactions. In contrast, in compound (II), the pyridine rings of both molecules have an anti conformation and the two independent molecules are linked by carbonyl–carbonyl interactions, as well as by C—H...O and C—H...N contacts.