Hydroxymethylated Phyllobilins: A Puzzling New Feature of the Dioxobilin Branch of Chlorophyll Breakdown

Colorless nonfluorescent chlorophyll (Chl) catabolites (NCCs) are formyloxobilin‐type phyllobilins, which are considered the typical products of Chl breakdown in senescent leaves. However, in degreened leaves of some plants, dioxobilin‐type Chl catabolites (DCCs) predominate, which lack the formyl group of the NCCs, and which arise from Chl catabolites by oxidative removal of the formyl group by a P450 enzyme. Here a structural investigation of the DCCs in the methylesterase16 mutant of Arabidopsis thaliana is reported. Eight new DCCs were identified and characterized structurally. Strikingly, three of these DCCs carry stereospecifically added hydroxymethyl groups, and represent bilin‐type linear tetrapyrroles with an unprecedented modification. Indeed, DCCs show a remarkable structural parallel, otherwise, to the bilins from heme breakdown.     

A Dioxobilin‐Type Fluorescent Chlorophyll Catabolite as a Transient Early Intermediate of the Dioxobilin‐Branch of Chlorophyll Breakdown in Arabidopsis thaliana

Chlorophyll breakdown in higher plants occurs by the so called “PaO/phyllobilin” path. It generates two major types of phyllobilins, the characteristic 1‐formyl‐19‐oxobilins and the more recently discovered 1,19‐dioxobilins. The hypothetical branching point at which the original 1‐formyl‐19‐oxobilins are transformed into 1,19‐dioxobilins is still elusive. Here, we clarify this hypothetical crucial transition on the basis of the identification of the first natural 1,19‐dioxobilin‐type fluorescent chlorophyll catabolite (DFCC). This transient chlorophyll breakdown intermediate was isolated from leaf extracts of Arabidopsis thaliana at an early stage of senescence. The fleetingly existent DFCC was then shown to represent the direct precursor of the major nonfluorescent 1,19‐dioxobilin that accumulated in fully senescent leaves.     

Chlorophyll Breakdown in Senescent Banana Leaves: Catabolism Reprogrammed for Biosynthesis of Persistent Blue Fluorescent Tetrapyrroles

Chlorophyll breakdown is a visual phenomenon of leaf senescence and fruit ripening. It leads to the formation of colorless chlorophyll catabolites, a group of (chlorophyll‐derived bilin‐type) linear tetrapyrroles. Here, analysis and structure elucidation of the chlorophyll breakdown products in leaves of banana (Musa acuminata) is reported. In senescent leaves of this monocot all chlorophyll catabolites identified were hypermodified fluorescent chlorophyll catabolites (hmFCCs). Surprisingly, nonfluorescent chlorophyll catabolites (NCCs) were not found, the often abundant and apparently typical final chlorophyll breakdown products in senescent leaves. As a rule, FCCs exist only fleetingly, and they isomerize rapidly to NCCs in the senescent plant cell. Amazingly, in the leaves of banana plants, persistent hmFCCs were identified that accounted for about 80 % of the chlorophyll broken down, and yellow leaves of M. acuminata display a strong blue luminescence. The structures of eight hmFCCs from banana leaves were analyzed by spectroscopic means. The massive accumulation of the hmFCCs in banana leaves, and their functional group characteristics, indicate a chlorophyll breakdown path, the downstream transformations of which are entirely reprogrammed towards the generation of persistent and blue fluorescent FCCs. As expressed earlier in related studies, the present findings call for attention, as to still elusive biological roles of these linear tetrapyrroles.     

Breakdown of Chlorophyll: A Fluorescent Chlorophyll Catabolite from Sweet Pepper (Capsicum annuum)

The primary fluorescent chlorophyll catabolite 1 (Ca‐FCC‐2) from sweet pepper (Capsicum annuum) has similar optical properties, but is slightly less polar than the primary FCC (pFCC; 2 ) from senescent cotyledons of oilseed rape (Brassica napus). Ca‐FCC‐2 was prepared from pheophorbide a using an enzyme extract from ripe C. annuum chromoplasts. The catabolite Ca‐FCC‐2 ( 1 ) could be determined from fast‐atom‐bombardment (FAB) mass spectra to be an isomer of pFCC ( 2 ). The constitution of Ca‐FCC‐2 was determined by homo‐ and heteronuclear magnetic‐resonance experiments and was found to be identical to that of pFCC. Further 2D‐homonuclear spectra of Ca‐FCC‐2 revealed it to differ from pFCC by the configuration at the methine atom C(1), whose configuration results from the action of red chlorophyll catabolite reductase (RCCR). The occurrence of two primary FCCs that are epimeric at C(1) provides a structural basis for the recent observation of two types of RCCRs among higher plants.     

Breakdown of Chlorophyll in Higher Plants—Phyllobilins as Abundant,Yet Hardly Visible Signs of Ripening,Senescence, and Cell Death

Fall colors have always been fascinating and are still a remarkably puzzling phenomenon associated with the breakdown of chlorophyll (Chl) in leaves. As discovered in recent years, nongreen bilin‐type Chl catabolites are generated, which are known as the phyllobilins. Collaborative chemical‐biological efforts have led to the elucidation of the key Chl‐breakdown processes in senescent leaves and in ripening fruit. Colorless and largely photoinactive phyllobilins are rapidly produced from Chl, apparently primarily as part of a detoxification program. However, fluorescent Chl catabolites accumulate in some senescent leaves and in peels of ripe bananas and induce a striking blue glow. The structural features, chemical properties, and abundance of the phyllobilins in the biosphere suggest biological roles, which still remain to be elucidated.     

Stereo‐ and Regioselective Phyllobilane Oxidation in Leaf Homogenates of the Peace Lily (Spathiphyllum wallisii): Hypothetical Endogenous Path to Yellow Chlorophyll Catabolites

In senescent leaves, chlorophyll typically is broken down to colorless and essentially photo‐inactive phyllobilanes, which are linear tetrapyrroles classified as “nonfluorescent” chlorophyll catabolites (NCCs) and dioxobilane‐type NCCs (DNCCs). In homogenates of senescent leaves of the tropical evergreen Spathiphyllum wallisii, when left at room temperature and extracted with methanol, the major endogenous, naturally formed NCC was regio‐ and stereoselectively oxidized (in part) to a mixture of its 15‐hydroxy and 15‐methoxy derivative. In the absence of methanol in the extract, only the 15‐OH‐NCC was observed. The endogenous oxidation process depended upon molecular oxygen. It was inhibited by carbon monoxide, as well as by keeping the leaf homogenate and extract at low temperatures. The remarkable “oxidative activity” was inactivated by heating the homogenate for 10 min at 70 °C. Upon addition of a natural epimeric NCC (epiNCC) to the homogenate of senescent or green Sp. wallisii leaves at room temperature, the exogenous epiNCC was oxidized regio‐ and stereoselectively to 15‐OH‐epiNCC and 15‐OMe‐epiNCC. The identical two oxidized epiNCCs were also obtained as products of the oxidation of epiNCC with dicyanodichlorobenzoquinone (DDQ). Water elimination from 15‐OH‐epiNCC occurred readily and gave a known “yellow” chlorophyll catabolite (YCC). The endogenous oxidation process, described here, may represent the elusive natural path from the colorless NCCs to yellow and pink coloured phyllobilins, which were found in (extracts of) some senescent leaves.     

Chlorophyll Breakdown – On a Nonfluorescent Chlorophyll Catabolite from Spinach

In extracts of senescent leaves of spinach (Spinacia oleracea) that had degreened naturally after the onset of flowering, four colorless compounds, which had characteristic UV/VIS properties of nonfluorescent chlorophyll catabolites (NCCs), were detected by HPLC. From the extracts of 58.7 g of senescent leaves of Sp. oleracea, a two‐stage HPLC purification procedure provided ca. 15 μmol of So‐NCC‐2, the most abundant polar NCC in the leaves of this vegetable. So‐NCC‐2 was isolated as a slightly yellow powder and analyzed by spectroscopic means. The high‐resolution mass spectra indicated that So‐NCC‐2 has the same molecular formula as Hv‐NCC‐1 from barley (Hordeum vulgare), the first non‐green chlorophyll catabolite from a higher plant to be structurally analyzed. Homo‐ and hetero‐nuclear NMR spectroscopy indicated So‐NCC‐2 to have the same constitution as its epimer Hv‐NCC‐1, and to differ from the latter by the configuration at C(1). The catabolite from spinach could be identified with one of the products from OsO₄ dihydroxylation at the vinyl group of the main NCC from Cercidiphyllum japonicum. Chlorophyll breakdown in spinach and in C. japonicum apparently involves an enzyme‐catalyzed reduction that occurs with the same stereochemical sense at C(1), but opposite to that in barley.     

Structures of Chlorophyll Catabolites in Bananas (Musa acuminata) Reveal a Split Path of Chlorophyll Breakdown in a Ripening Fruit

The disappearance of chlorophyll is a visual sign of fruit ripening. Yet, chlorophyll breakdown in fruit has hardly been explored; its non-green degradation products are largely unknown. Here we report the analysis and structure elucidation of colorless tetrapyrrolic chlorophyll breakdown products in commercially available, ripening bananas (Musa acuminata, Cavendish cultivar). In banana peels, chlorophyll catabolites were found in an unprecedented structural richness: a variety of new fluorescent chlorophyll catabolites (FCCs) and nonfluorescent chlorophyll catabolites (NCCs) were detected. As a rule, FCCs exist only "fleetingly" and are hard to observe. However, in bananas several of the FCCs (named Mc-FCCs) were persistent and carried an ester function at the propionate side-chain. NCCs were less abundant, and exhibited a free propionic acid group, but functional modifications elsewhere. The modifications of NCCs in banana peels were similar to those found in NCCs from senescent leaves. They are presumed to be introduced by enzymatic transformations at the stage of the mostly unobserved, direct FCC-precursors. The observed divergent functional group characteristics of the Mc-FCCs versus those of the Mc-NCCs indicated two major "late" processing lines of chlorophyll breakdown in ripening bananas. The "last common precursor" at the branching point to either the persistent FCCs, or towards the NCCs, was identified as a temporarily abundant "secondary" FCC. The existence of two "downstream" branches of chlorophyll breakdown in banana peels, and the striking accumulation of persistent Mc-FCCs call for attention as to the still-elusive biological roles of the resulting colorless linear tetrapyrroles.     

Effects of Substituents on Synthetic Analogs of Chlorophylls. Part 4: How Formyl Group Location Dictates the Spectral Properties of Chlorophylls b,d and f

Photosynthetic organisms are adapted to light characteristics in their habitat in part via the spectral characteristics of the associated chlorophyll pigments, which differ in the position of a formyl group around the chlorin macrocycle (chlorophylls b, d, f) or no formyl group (chlorophyll a). To probe the origin of this spectral tuning, the photophysical and electronic structural properties of a new set of synthetic chlorins are reported. The zinc and free base chlorins have a formyl group at either the 2‐ or 3‐position. The four compounds have fluorescence yields in the range 0.19–0.28 and singlet excited‐state lifetimes of ca 4 ns for zinc chelates and ca 8 ns for the free base forms. The photophysical properties of the 2‐ and 3‐formyl zinc chlorins are similar to those observed previously for 13‐formyl or 3,13‐diformyl chlorins, but differ markedly from those for 7‐formyl analogs. Molecular‐orbital characteristics obtained from density functional theory (DFT) calculations were used as input to spectral simulations employing the four‐orbital model. The analysis has uncovered the key changes in electronic structure engendered by the presence/location of a formyl group at various macrocycle positions, which is relevant to understanding the distinct spectral properties of the natural chlorophylls a, b, d and f.     

Tetrathienylethene‐based Positional Isomers with Aggregation‐induced Emission Enabling Super Red‐shifted Reversible Mechanochromism and Naked‐eye Sensing of Hydrazine Vapor

AIE‐active positional isomers, TTE‐o‐PhCHO , TTE‐m‐PhCHO and TTE‐p‐PhCHO , tetrathienylethene ( TTE) derivates with peripherally attached ortho‐/meta‐/para‐formyl phenyl groups, were designed and synthesized. The formyl substitution position can effectively modulate their photophysical properties, mechanochromism and fluorescent response to hydrazine. TTE‐o‐PhCHO and TTE‐m‐PhCHO exhibit remarkable AIE characteristics, and TTE‐p‐PhCHO possesses aggregation‐induced emission enhancement performance. They all exhibit high contrast mechanochromism, and TTE‐m‐PhCHO shows larger red‐shift (164 nm) than TTE‐o‐PhCHO (104 nm) and TTE‐p‐PhCHO (125 nm) due to the more twisted molecular conformation and much looser molecular packing. Moreover, TTE‐o‐PhCHO with a higher contrast color change can be used as ink‐free rewritable paper. In addition, TTE‐p‐PhCHO , as a turn‐on fluorescent probe, can selectively detect hydrazine with significant color changes that are visible by the naked eye . Therefore, the position dependence of groups would be an effective method to modulate the molecular arrangement, as well as develop AIE compounds for mechano‐stimuli responsive materials, ink‐free rewritable papers and chemosensors.     

Syntheses of Chalcone‐Type Chlorophyll Derivatives Possessing a Bacteriochlorin,Chlorin or Porphyrin π‐System and Their Optical Properties

C3‐(Trans‐2‐arylethenyl)carbonylated chlorophyll derivatives possessing a bacteriochlorin or chlorin π‐system were synthesized by cross‐aldol (Claisen–Schmidt) condensation of methyl pyrobacteriopheophorbide‐a or 3‐acetyl‐3‐devinyl‐pyropheophorbide‐a bearing the C3‐acetyl group with p‐(un)substituted benzaldehydes under basic conditions. The corresponding porphyrin‐type chlorophyll derivatives were prepared by the oxidation (17,18‐didehydrogenation) of the chlorin‐type. Their Qy absorption and fluorescence emission maxima in dichloromethane correlated well with Hammett substituent constants of the p‐substituents. Several electron‐withdrawing p‐substituents suppressed the emission due to photoinduced electron transfer quenching in a molecule. The substitution sensitivities for their maxima and fluorescence quantum yields decreased in the order of bacteriochlorin‐, chlorin‐ and porphyrin‐type derivatives.     

Breakdown of Chlorophyll: A Tetrapyrrolic Chlorophyll Catabolite from Senescent Rape Leaves. Preliminary communication

The experiments leading to the isolation and to the elucidation of the constitution of Bn-NCC-1, a colourless non-fluorescent chlorophyll catabolite from senescent cotyledons of rape (Brassica napus L.), are described. A series of fast-atom-bombardment (FAB) mass and ¹H- and ¹³C-NMR spectral experiments are used to determine the constitution of the catabolite Bn-NCC-1. The structural information available indicates Bn-NCC-1 to be a 1-formyl-19-oxobilane, structurally related to ‘RP 14’, isolated earlier from artificially aged primary leaves of barley. The major differences between the constitution of the metal-free chlorophyll pheophorbide a and that of Bn-NCC-1 concern oxygenolytic opening of the porphinoid macrocycle at C(4)? C(5), saturation at the other meso positions, hydrolysis of the methyl-ester function, and functionalization by a malonic-acid unit of the side chain at C(8). This work provides for the first time the structural data of a chlorophyll-degradation product from senescent plant leaves formed under normal growth conditions.     

Yellow Dioxobilin-Type Tetrapyrroles from Chlorophyll Breakdown in Higher Plants—A New Class of Colored Phyllobilins

In senescent leaves chlorophyll (Chl) catabolites typically accumulate as colorless tetrapyrroles, classified as formyloxobilin-type (or type-I) or dioxobilin-type (type-II) phyllobilins (PBs). Yellow type-I Chl catabolites (YCCs) also occur in some senescent leaves, in which they are generated by oxidation of colorless type-I PBs. A yellow type-II PB was recently proposed to occur in extracts of fall leaves of grapevine (Vitis vinifera), tentatively identified by its mass and UV/Vis absorption characteristics. Here, the first synthesis of a yellow type-II Chl catabolite (DYCC) from its presumed natural colorless type-II precursor is reported. A homogenate of a Spatiphyllum wallisii leaf was used as “green” means of effective and selective oxidation. The synthetic DYCC was fully characterized and identified with the yellow grapevine leaf pigment. As related yellow type-I PBs do, the DYCC functions as a reversible photoswitch by undergoing selective photo-induced Z/E isomerization of its C15=C16 bond.     

Chlorophyll Catabolites in Fall Leaves of the Wych Elm Tree Present a Novel Glycosylation Motif

Fall leaves of the common wych elm tree (Ulmus glabra) were studied with respect to chlorophyll catabolites. Over a dozen colorless, non‐fluorescent chlorophyll catabolites (NCCs) and several yellow chlorophyll catabolites (YCCs) were identified tentatively. Three NCC fractions were isolated and their structures were characterized by spectroscopic means. Two of these, Ug‐NCC‐27 and Ug‐NCC‐43, carried a glucopyranosyl appendage. Ug‐NCC‐53, the least polar of these NCCs, was identified as the formal product of an intramolecular esterification of the propionate and primary glucopyranosyl hydroxyl groups of Ug‐NCC‐43. Thus, the glucopyranose moiety and three of the pyrrole units of Ug‐NCC‐53 span a 20‐membered ring, installing a bicyclo[17.3.1]glycoside moiety. This structural motif is unprecedented in heterocyclic natural products, according to a thorough literature search. The remarkable, three‐dimensional bicyclo[17.3.1]glycoside architecture reduces the flexibility of the linear tetrapyrrole. This feature of Ug‐NCC‐53 is intriguing, considering the diverse biological effects of known bicyclo[n.3.1]glycosidic natural products.     

Investigation of processing,thermal, and mechanical properties of a new composite matrix‐benzoxazine containing aldehyde group

A new benzoxazine aldehyde group containing monomer 3‐phenyl‐6‐formyl‐3, 4‐dihydro‐2H‐1, 3‐benzoxazine (Ald‐B) was synthesized via the Mannich reaction of formaldehyde, p‐hydroxybenzaldehyde, and aniline. The viscosities and curing behavior of the resins were studied. The results indicated that Ald‐B has an initial viscosity lower than 0.110 Pa s at 90°C and the maximum temperature of the exotherm was at 196°C. Dynamic mechanical analysis (DMA) of the copolymer of Ald‐B and methylenedianiline‐type bis‐benzoxazine (B‐BOZ) showed only one T_g of 251°C and high crosslink density in the matrix. The thermal stability of the copolymer was improved noticeably and the char yield at 800°C is 68.4%. The tensile strength and flexural strength of this resin cast are 72 and 137 MPa, respectively. Copyright © 2009 John Wiley & Sons, Ltd.     

Enhancement of Light Absorption Ability of Synthetic Chlorophyll Derivatives by Conjugation with a Difluoroboron Diketonate Group

The enhancement of the light absorption ability of synthetic chlorophyll derivatives is demonstrated. Chlorophyll derivatives directly conjugated with a difluoroboron 1,3‐diketonate group at the C3 position were synthesized from methyl pyropheophorbide‐d through Barbier acylmethylation of the C3‐formyl moiety, oxidation of the C3‐carbinol, and difluoroboron complexation of the diketonate. Electronic absorption spectra in a diluted solution showed that the synthetic conjugates gave an absorption band at λ=400–500 nm, with a Qy band shifted to a longer wavelength of λ≈700 nm. DFT calculations demonstrated that the absorption bands and redshifts were ascribable to the coupling of the LUMO of chlorin with that of the difluoroboron diketonate moiety. The introduction of a pyrenyl group at the C3³‐position of the conjugate afforded an additional charge‐transfer band over λ=500 nm, producing a pigment that bridged the green gap in standard chlorophylls.     

Chlorophyll‐Derived Yellow Phyllobilins of Higher Plants as Medium‐Responsive Chiral Photoswitches

The fall colors are signs of chlorophyll breakdown, the biological process in plants that generates phyllobilins. Most of the abundant natural phyllobilins are colorless, but yellow phyllobilins (phylloxanthobilins) also occur in fall leaves. As shown here, phylloxanthobilins are unique four‐stage photoswitches. Which switching mode is turned on is controlled by the molecular environment. In polar media, phylloxanthobilins are monomeric and undergo photoreversible Z/E isomerization, similar to that observed for bilirubin. Unlike bilirubin, however, the phylloxanthobilin Z isomers photodimerize in apolar solvents by regio‐ and stereospecific thermoreversible [2+2] cycloadditions from self‐assembled hydrogen‐bonded dimers. X‐ray analysis revealed the first stereostructure of a phylloxanthobilin and its hydrogen‐bonded self‐templating architecture, helping to rationalize its exceptional photoswitch features. The chemical behavior of phylloxanthobilins will play a seminal role in identifying biological roles of phyllobilins.     

Effects of introduction of α‐carboxylate,N‐methyl,and N‐formyl groups on intramolecular cyclization of o‐quinone amines: Density functional theory‐based study

o‐Quinone amines, which are relevant to various biological processes, can undergo spontaneous intramolecular cyclization (ring closure reaction by amino‐terminated hydrocarbon side chain) that deactivates them toward another possible reactions, that is, thiol binding. Density functional theory‐based calculation is employed for obtaining the potential energy curves along the C? N bond formation in the intramolecular cyclization of various o‐quinone amines, viz., dopaminequinone, dopaquinone, N‐methyl‐dopaminequinone, N‐formyl‐dopaminequinone, and the corresponding methylene‐inserted analogues. The activation barrier is decreased by introduction of α‐carboxylate and N‐methyl group whereas increased by introduction of N‐formyl group. A negative correlation between the activation barriers and the level of highest occupied molecular orbital is pointed out. Furthermore, the methylene‐inserted analogues show decreased activation barriers. This is explained by reduction of steric repulsion in the transition state.     

Chlorophyll Breakdown in Maize: On the Structure of Two Nonfluorescent Chlorophyll Catabolites

In extracts of senescent leaves of the maize plant Zea mays, two colorless compounds with UV/Vis-characteristics of nonfluorescent chlorophyll catabolites (NCCs) were detected and tentatively named Zm-NCCs. The constitution of the two polar Zm-NCCs was determined by spectroscopic means, which confirmed both of these tetrapyrroles to have the basic ligand structure typical of the NCCs from (other) senescent higher plants. In the less polar catabolite, named Zm-NCC-2, the core structure was conjugated at the 8²-position with a glucopyranose unit. Zm-NCC-2 had the same constitution as Nr-NCC-2, an NCC from tobacco (Nicotiana rustica). Indeed, the two NCCs were identified (further) based on their HPL-chromatographic and NMR-spectroscopic properties. The more polar NCC from maize, Zm-NCC-1, differed from Zm-NCC-2 by carrying a dihydroxyethyl side chain instead of a vinyl group at the 3-position. In earlier work on polar NCCs, only separate glucopyranosyl- and dihydroxyethyl-functionalities were detected. Zm-NCC-1 thus is a new constitutional variant of the structures of NCCs from senescent higher plants.     

Chlorophyll Breakdown in Maize: On the Structure of Two Nonfluorescent Chlorophyll Catabolites

Summary. In extracts of senescent leaves of the maize plant Zea mays, two colorless compounds with UV/Vis-characteristics of nonfluorescent chlorophyll catabolites (NCCs) were detected and tentatively named Zm-NCCs. The constitution of the two polar Zm-NCCs was determined by spectroscopic means, which confirmed both of these tetrapyrroles to have the basic ligand structure typical of the NCCs from (other) senescent higher plants. In the less polar catabolite, named Zm-NCC-2, the core structure was conjugated at the 8²-position with a glucopyranose unit. Zm-NCC-2 had the same constitution as Nr-NCC-2, an NCC from tobacco (Nicotiana rustica). Indeed, the two NCCs were identified (further) based on their HPL-chromatographic and NMR-spectroscopic properties. The more polar NCC from maize, Zm-NCC-1, differed from Zm-NCC-2 by carrying a dihydroxyethyl side chain instead of a vinyl group at the 3-position. In earlier work on polar NCCs, only separate glucopyranosyl- and dihydroxyethyl-functionalities were detected. Zm-NCC-1 thus is a new constitutional variant of the structures of NCCs from senescent higher plants.