Thermal properties and ion mobility in complex antimony(III) fluorides with α-amino acids

Differential thermal analysis (DTA) and (¹⁹F, ¹H) NMR spectroscopy were used to study thermal properties and ion mobility in complex antimony(III) fluorides with amino acids of composition [(CH₃)₂CH(CH₂)CH(NH₃)COOH]SbF₄ (LeuHSbF₄), SbF₃[(CH₃)₂CH(CH₂)CH(⁺NH₃)COO^?] (SbF₃ · Leu), and SbF₃[(CH₃)₂CHCH(⁺NH₃)COO^?] (SbF₃ · Val). Ionic conductivity in L-leucinium tetrafluoroantimonate(III) was studied using impedance spectroscopy. LeuHSbF₄ was found to undergo a diffusion phase transition to a relatively highly conductive state in the range 385?C415 K with an attendant loss of thermal stability (softening) of the high-temperature phase.     

The infrared spectrum and force field of the methyl-ammonium ion in (CH3NH3)2PtCl6

Infrared spectra of the CH₃NH₃⁺, CH₃ND₃⁺, CD₃NH₃⁺ and CD₃ND₃⁺ ions in bis(methylammonium)hexachloroplatinate(IV) have been recorded. The spectra are entirely consistent with the C_3v symmetry reported for the methylammonium ion, at temperatures between room temperature and 90 K. No spectral manifestations of the phase transition, which in (CH₃NH₃)₂PtCl₆ has been reported to take place at 125 K, were observed. Assignments of the infrared-active fundamentals have been made for each ion and a normal-coordinate analysis has been performed using the observed fundamental frequencies. Comparison with the infrared spectra of other methylammonium salts shows that hydrogen bonding in (CH₃NH₃)₂PtCl₆, if present, is weak.     

Vibrational spectra of ethyl iodedes

The infrared spectra of CH₃CH₂I, CD₃CH₂I, and CH₃CD₂I of the vapors and the solids at 170°C have been recorded from 4000-200 cm^?1. The Raman spectra of the liquids and vapors have also been recorded and depolarization values have been measured. Assignment of the eighteen fundamental vibrations has been based on depolarization values, band contours, group-frequency correlations, and normal coordinate calculations. A critical discussion of the CH stretching assignments in CH₃CH₂X molecules is presented.     

A novel hybrid material based on two symmetrically independent Keggin polyoxoanions: [NH3-CH(CH3)COOH][H3O]8[PMo12O40]3.4NH3CH(CH3)COO

Novel polyoxometalate-based organic-inorganic hybrid [NH₃-CH(CH₃)COOH][H₃O]₈[PMo₁₂O₄₀]₃.4NH₃CH(CH₃)COO was synthesized and characterized by ³¹P, ¹H, ¹³C NMR and IR spectroscopies, elemental analysis and single crystal X-ray determination. Two of the PMo₁₂O₄₀ ^3? anions in the title hybrid are symmetrically equivalent. They are crystallographically independent from the third PMo₁₂O₄₀ ^3? polyoxoanion, in the case of various interactions with neighboring components in the crystal network (i.e. ⁺NH_3-CH(CH₃)-COOH and H₃O⁺ cations, ₊NH₃CH(CH₃)COO^? zwitterions and polyoxoanions). The compound crystallizes in an orthorhombic C222 space group with a = 16.0392(16) Å, b = 34.480(4) Å, c = 12.8968(13) Å and Z = 2.     

The anomeric effect: Ab-initio studies on molecules of the type X?CH2?O?CH3

The anomeric effect of the functional groups X = C?N, C?CH, COOH, COO^?, O? CH₃, NH₂, and NH⁺₃ has been studied with ab initio techniques. Geometry effects upon rotation around the central C? O bond in X? CH₂? O? CH₃ have been compared in the various compounds. The energy differences between the conformers with a gauche and trans (X? C? O? C) arrangement were calculated at the 6-31G* level in the fully optimized 4-21G geometries. Energy differences calculated at the 4-21G level appeared not to be reliable, especially for the groups X that contain non-sp³ hybridized atoms. The 6-31G* energy differences indicate a normal anomeric effect for X = COO^?, O? CH₃, and NH₂(g⁺) (ca. 13 kJ/mol) and a small anomeric effect for X = COOH, C?N, and C?CH (ca. 6 kJ/mol). For X = NH₂(t) and NH⁺₃ a reverse anomeric effect occurs. These observations are in line with experimental results and evidence is given for a competition among various stereoelectronic interactions that occur at the same anomeric center. Geometry variations can be understood in terms of simple rules associated with anomeric orbital interactions. Trends followed when the group X is varied cannot be related in a straightforward way to the energy differences between the trans and the gauche forms in these compounds. Only the variation in the gauche torsion angle X? C? O? C follows roughly the same trend.     

Infrared and Raman spectra and normal coordinate calculations for methylisothiocyanate

The infrared spectra (3200-50 cm^?1) of gaseous and solid CH₃NCS and CD₃NCS and the Raman spectra (3200-10 cm^?1) of the liquids and solids have been recorded. The spectra have been interpreted on the basis of a “pseudo-symmetric top” with C_3v symmetry. An assignment of the fundamental vibrations in both molecules, based on their infrared band contours, depolarization values and group frequencies, is given and discussed. Particularly interesting is the low-frequency region where band maxima were observed at 152 and 80 cm^?1 for CH₃NCS and 139 and 71 cm^?1 for CD₃NCS in the infrared spectra of the gases. A normal coordinate analysis has also been carried out based on C_3v symmetry. Considerable mixing was found between the C_αN stretch and NCS symmetric stretch in both isotopic species. The other normal modes in CH₃NCS are reasonably pure but, for the CD₃NCS molecule, considerable mixing was found between the CD₃ stretches and NCS antisymmetric stretch. The proposed vibrational assignment and the results of the normal coordinate calculations are discussed and compared with the results obtained for similar molecules.     

Study of the temperature effect on IR spectra of crystalline amino acids,dipeptides, and polyamino acids. IV. L-cysteine and DL-cysteine

A study of the IR spectra of L- and DL-cysteine is carried out in a range of frequencies from 4000 cm^?1 to 600 cm^?1 and temperatures from 333 K to 83 K. Changes in the spectra of L- and DL-cysteine (NH ₃ ⁺ CH(CH₂SH)-COO^?) on cooling are analyzed in comparison with the spectra of L- and DL-serine (NH ₃ ⁺ CH(CH₂OH)-COO^?) and three polymorphs of glycine (NH ₃ ⁺ CH₂-COO^?) previously studied under temperature variation. Changes in the IR spectra at variable temperatures are correlated with previously obtained diffraction data on anisotropic compression of the structure and changes in the geometric parameters of hydrogen bonds. Special attention is paid to temperature regions in which anomalies were detected by vibrational spectroscopy, X-ray diffraction, and calorimetry.     

A joint local mode and normal mode interpretation of vibrational anharmonicity in methyl bromide

The gas-phase i.r. spectrum of CH₃Br has been studied up to 14 000 cm⁻¹. Some 32 new vibration levels are located accurately, involving up to 5 quanta (V= 5) of excitation in CH stretching. Reproduction of a total of 72 vibration levels is achieved through a joint treatment of CH stretching vibrations in a local mode basis, other vibrations in a normal mode basis, and with the inclusion of two Fermi resonances. The local mode approach satisfactorily accounts for the effects of the large Darling—Dennison vibrational interactions which occur between CH stretching modes. Fermi resonances between CH stretching and overtones of both methyl group deformation vibrations (ν₂ and ν₅) are treated explicitly. Interacting levels become quasi-degenerate at V = 3 in the case of 2ν₅, and at V = 5 in the case of 2ν₂. The analysis permits the determination of a complete set of 27 physically representative anharmonicity constants for CH₃Br, four of which are interrelated through the local mode model. Data reproduction between 600 and 14 000 cm⁻¹ is achieved with an r.m.s. error of 2.55 cm⁻¹.     

Theoretical studies of thiols and disulfides. Conformations,barriers and proton affinities

Results from an ab-initio MO LCAO SCF study of RSSR, RSH and RS^? (R = H, CH₃) in a minimal and a double zeta basis and cysteine [COO^?CH(NH⁺₃)CH₂SH] and cysteine anion in a minimal basis are reported. The barriers and conformational preference of the disulfides are discussed and it is suggested that their origin is more confined to the disulfide region than previously believed. The proton affinities of the different RS^? ions are calculated, whereas the protonation of the disulfide bond is studied by use of the molecular electrostatic potential. The good agreement of the results in the minimal and the double zeta basis is discussed.     

Force constants in molecular crystals of methyl-and perdeuteriomethylmercury(II) halides

Force constants for the internal vibrations involving the metal and for the lattice vibrations of Hg(CH₃)X and Hg(CD₃)X (X = Cl, Br or I) are calculated on the basis of a D_4h⁷ layer structure. The internal HgX stretching force constants are much lower than for these molecules in solution, but HgC stretching force constants are slightly higher. The HgX and longitudinal translatory force constants within the lattice layer are close in value to the strong and weak HgX bond stretching force constants respectively in the unsymmetrical [Hg(CH₃)X₂]^? complex ions.     

Infrared and Raman spectroscopic characterization of the hydrogen-bonding network in l-serine crystal

The IR spectra (4000–400 cm⁻¹) of neat and isotopically substituted (ND/OD ≤ 10% D and ≅30% D) polycrystalline l-serine (α-amino-β-hydroxypropionic acid; HO–CH₂–CH(NH₃)⁺–COO⁻) were recorded in the temperature range 300–10 K and assigned. The isotopic-doping/low-temperature methodology, which allows for decoupling of individual proton vibrational modes from the crystal bulk vibrations, was used for estimating the lengths and energies of the different H-bonds present in l-serine crystal. To this end, the frequency shifts observed in both the NH/OH stretching and out-of-plane bending spectral regions (relatively to reference values for these vibrations in non-hydrogen-bonded l-serine molecules) were used, together with previously developed empirical correlations between these spectral parameters and the H-bond properties. In addition, the room-temperature Raman spectrum (4000–150 cm⁻¹) of a single crystal of neat l-serine was also recorded and interpreted. A systematic comparison was made between the spectroscopic data obtained currently for l-serine and previously for dl-serine, revealing that the vibrational spectra of the two crystals reflect well the different characteristics of their hydrogen-bond networks, and also correlate accurately with the different susceptibility of the two crystals to pressure-induced strain.     

Reactions of photogenerated fluorine atoms with dopant molecules in solid argon

The products of UV photolysis of ternary Ar?CH₄(CD₄)?F₂ mixtures (1:c:c ₀,c, c ₀=0.001–0.01) at 13–16 K were identified by ESR and FTIR spectroscopy. These products are^?CH₃ (^?CD₃) radicals of typesI andII and molecular CH₃F?HF complexes. The latter were characterized by the IR bands of the stretching C?F (1003 cm^?1) and H?F (3774 cm^?1) vibrations. The ESR spectra of radicalsI are asymmetric. The anisotropy of theg-factor (Δg～10^?3) of radicalI indicates that the structure of the radicals is nonplanar. The ESR spectrum of the typeII radical is identical to that of matrix-isolated^?CH₃ (^?CD₃) radicals with the planar structure (Δg<5·10^?5). Under the experimental conditions, the amount of complexes formed in the photolysis is equal to 0.022·c. When the photolysis is ceased, radicalI disappears after ≈10³ s and radicalII is stabilized. The limiting concentrations of the stabilized^?CH₃ and^?CD₃ radicals are equal to 2·10^?2·c and 2·10^?3·c, respectively. A mechanism of the formation of the products is suggested. It is based on the assumption that both matrix-isolated CH₄ and F₂ and their heterodimers CH₄?F₂ are present in the samples and it takes into account the long-range migration of translationally excited flourine atoms. The CH₃F?HF complexes and radicalsI are generated by the photolysis of the CH₄?F₂ heterodimers. The decay of radicalsI is caused by geminate recombination of proximate F...CH₃ pairs. RadicalsII are formed in the reaction of translationally excited fluorine atoms with isolated CH₄ (CD₄) molecules.     

Benefits of near-infrared spectroscopy for characterization of selected organo-montmorillonites

The potential of near infrared (NIR) spectroscopy in characterization of organically modified clay minerals is introduced. Selected organo-clays, possibly perspective fillers in clay polymer nanocomposites, were prepared from Na-montmorillonite and different surfactants containing octylammonium chain(s), hexadecylammonium chain(s) or a benzene ring with or without a reactive double bond. Based on the stretching (ν) and bending (δ) vibrations observed in the middle IR (MIR) region, the first overtone (2νXH) and combination (ν + δ)XH modes of XH groups (X = O, C, N) are identified. The effect of larger alkylammonium cations on the vibrations of Si-O and OH bonds in montmorillonite layers is observed. The changes in the intensity of the (ν + δ)H₂O band near 5250 cm⁻¹ allows for comparison of the amount of water adsorbed on the montmorillonite surface. The water content decreases with the size of the organic cation reflecting increasing hydrophobicity of the montmorillonite surface. The NIR region shows the 2νCH₃ and 2νCH₂ bands in the 5900-5500 cm⁻¹ region, an upward shift is observed for the complex band due to 2νCH(Ar) of aromatic benzene ring. The NIR spectra are extremely useful in identification of NH₂⁺, NH⁺ and vinyl groups, which are difficult to recognize in the MIR spectra of organo-clays due to overlapping with other absorption bands. The intense bands corresponding to overtones and combination vibrations of NH₃⁺ and NH₂⁺ groups are found in the 6600-6050 cm⁻¹ and 5000-4600 cm⁻¹ regions, the (ν + δ)NH⁺ is unambiguously identified near 4750 cm⁻¹. The characteristic band assigned to 2νCH₂ in H₂CC is detected near 6130 cm⁻¹.     

High-pressure photoionization mass spectrometry. Effect of internal energy and density on the ion–molecule reactions occurring in methyl,dimethyl, and trimethylamine

The ion–molecule reactions of CH₃NH₂⁺, (CH₃)₂NH⁺, and (CH₃)₃N⁺ with the respective amines have been investigated at thermal kinetic energies in a high-pressure photoionization mass spectrometer at several wavelengths (energies) in the vacuum ultraviolet. The absolute rate coefficient for proton transfer from (CH₃)₃N⁺ to (CH₃)₃N decreases from 8.2 × 10^?10 cm³/molecule · sec at 147.0 nm (8.4 eV) to 4.9 × 10^?10 cm³/molecule. sec at 106.7-104.8 nm (11.7 eV). In dimethylamine, the rate coefficient decreases from 11.6 × 10^?10 cm³/molecular. sec at 8 4 eV to 10.2 × 10^?10 cm³/molecule osec at 11.7 eV, while no significant effect of energy was detected in methylamine. The reactions of several fragment ions are also reported. Experiments were also carried out at pressures up to 0.5 torr in order to investigate the further solvation of CH₃NH₂⁺, (CH₃)₂NH₂⁺, and (CH₃)₃NH⁺. It was found that the maximum proton solvation numbers in methyl-, dimethyl-, and trimethyl-amine are 4, 3, and 2, respectively, under these conditions.     

IR spectra of long-chain α,ω-alkanediols: 1,22-docosanediol and 1,44-tetratetracontanediol

The IR absorption spectra of α,ω-alkanediols with different chain lengths, HO(CH₂)₂₂OH and HO(CH₂)₄₄OH, in the spectral range of 400–5000 cm^?1 are analyzed. The assignment of numerous absorption bands to vibration modes in short methylene sequences and terminal hydroxyl groups is suggested. The splitting of IR absorption bands into doublets at 720–730 cm^?1 (rocking vibrations of CH₂ groups) and 1463–1473 cm^?1 (bending vibrations of CH₂ groups) testifies that the crystal unit subcells in the lamellae of alkanediols are orthorhombic with parameters typical of normal hydrocarbons. The specific features of absorption bands due to O-H stretching and C-O-H bending vibrations have been analyzed. These bands appear during formation of lengthy associates from hydrogen bonds formed by hydroxyl groups on the surface of elementary lamellae. A sharp increase in the intensity of the absorption bands in progression of C-C stretching and CH₂ wagging vibrations due to the anharmonic Fermi resonance with the stretching vibrations of C-O groups in the terminal hydroxyl groups has been detected.     

Infrared Spectra of Krypton Solutions of Methylamine

Variable temperature (–105 to –145°C) studies of the infrared spectra (3500–400 cm^–1) of methylamine, CH₃NH₂, dissolved in liquid krypton have been recorded. From these data, the hydrogen bonding enthalpy has been determined to be 530 ± 29 cm^–1 (6.34 ± 0.35 kJ/mol). The elusive ₁₃ and ₁₄ fundamentals, which are strongly mixed CH₃ rock and NH₂ twist, have been observed at 1244 and 876 cm^–1, respectively. These assignments are supported by frequency predictions from ab initio MP2/6-31G(d) calculations where the predicted infrared intensities for these two vibrations are 0.054 and 0.002 km/mol. The ab initio predicted infrared spectrum compares very favorably with that observed in the krypton solution. Normal coordinate calculations have also been carried out for four other isotopomers of methylamine, CH₃NHD, CH₃ND₂, CD₃NH₂, and CD₃ND₂ and vibrational assignments given from previously reported infrared spectra of matrix isolated samples. The Raman spectrum of these latter three isotopes, along with the normal species, have been predicted from MP2/6-31G(d) calculations and the results compared to the experimental spectra. The equilibrium structural parameters have been obtained from ab initio calculations utilizing several different basis sets with full electron correlation by the perturbation method to second order. These predicted values are compared to the previously reported experimental structural parameters.     

Lignin-type, α,β-unsaturated aldehydes of lignin-type in organic solvents

A 1:1 reaction of [HO(CH₂)₃]₃P with 4-hydroxy-3-methoxy-cinnamaldehyde (coniferaldehyde) or 3,5-dimethoxy-4-hydroxycinnamaldehyde (sinapaldehyde) in acetone at room temperature affords phosphonium zwitterions of the type R₃P⁺CH(4-O^?-Ar)CH₂CHO; other phosphines [R = Et, n-Bu, (CH₂)₂CN, and p-Tol] do not react under the same conditions. In alcohols R??OH(D) [R?? = CD₃, Et, (CD₃)₂CD, s-Bu, HOCH₂CH₂], the above phosphines (except the cyano-derivative) and those where R = i-Pr, Cy, Me₂Ph, MePh₂ do react within an equilibrium established between the reactants and the zwitterion-hemiacetal products R₃P⁺CH(4-O^?-Ar)CH₂CH(OH)(OR??) that are formed as a mixture of two diastereomers. The nature of the phosphine and the alcohol affects the equilibrium and the diastereomeric ratio.     

The Raman spectra of serine and 3,3-dideutero-serine in aqueous solution

The Raman spectra of serine [α-amino-β-hydroxypropionic acid; HOCH₂CH(NH₃)⁺COO⁻] and 3,3-dideutero-serine [HOCD₂CH(NH₃)⁺COO⁻] in aqueous solution were studied in the range 4000–300 cm⁻¹. The data obtained for the deuterated compound are novel and provide compelling evidence that previously reported assignments for the undeuterated amino acid should be revised.     

Isotope effects and H/D scrambling in the fragmentation of labelled propenes

The fragmentation reaction [C₃(H,D)₆]⁺· → [C₃(H,D)₅]⁺ + (H, D) has been examined in the metastable decomposition region for two pairs of labelled propenes: CH₃CD?CH₂,CD₃CH?CD₂ and CD₃CH?CH₂, CH₃CD?CD₂. The results indicate that complete hydrogen scrambling occurs in the propene molecular ion prior to fragmentation. The isotope effect kH/kD is in the range 2·1 to 3·3.