The structure and conformation of dichloroacetyl chloride as determined by gas-phase electron diffraction

The structure and conformation of dichloroacetyl chloride have been determined by gas-phase electron diffraction at nozzle temperatures of 20 and 119°C. The molecules exist as a mixture of two conformers with the hydrogen and oxygen atoms syn and gauche to each other. The composition (mole fraction of syn form) of the vapor was found to be 0.72 ± 0.06 and 0.73 ± 0.12 at 20 and 119°C, respectively, corresponding to almost equal energy for the two forms. The results for the distance (r_g), angle ∠α and r.m.s. amplitude (l) parameters obtained at the two temperatures are entirely consistent. At 20°C the more important parameters, with estimated uncertainties of 3σ are: r(C-H) = 1.062(0.049)Å, r(C0) = 1.189(0.003)Å, r(C-C) = 1.535(0.008)Å, r(CO-Cl) = 1.752 (0.009)Å, r(CHCl-Cl) = 1.771(0.004)Å, ∠C-CO = 123.3(1.3)°, ∠C-CO-Cl = 113.9 (5.9)°, ∠C-CHCl—Cl = 109.5(1.5)°, ∠C1-C-Cl = 111.7(0.5)°, ∠Cl-C-H = 108.0(1.5), φ₁ (HCCO torsion angle in the syn conformer) = 0.0° (assumed), φ₂ (HCCO torsion angle in the gauche conformer) = 138.2(5.1)°.     

The structure of methyl silatrane (1-methyl-2,8,9-trioxa-5-aza-1-silabicyclo(3.3.3)undecane) as determined by gas phase electron diffraction

The structure of methyl silatrane is investigated by gas-phase electron diffraction at 185° C. The molecule possesses C_3v symmetry. The result obtained for the Si—N distance (2.45(5) Å) indicates essentially no dative bonding between Si and N in the gas phase. This result is quite different from the solid-state result which indicates a Si←N dative bond length of 2.175(4) Å. Other structural parameters compare favorably with both the solid state results and with values obtained in the gas phase for similar molecules.     

The molecular structure of pyrazine as determined from gas-phase electron diffraction data

The structure of pyrazine (1,4 diazabenzene, C₄H₄N₄) has been determined at 333 K by means of gas-phase electron diffraction. The r_g parameters are as follows: r(C-C) = 1.339 ± 0.002 Å. r(C-N) = 1.403 ± 0.004 Å, r(C-H) = 1.115 ± 0.004 Å. ∠C-C-N = 115.6 ± 0.4°, and ∠C-C-H = 123.9 ± 0.6° (error limits are 2.5σ). At a 10% level the r_α structure does not differ significantly from the structure in the solid state, so long as high order X-ray, results corrected for librational motion are used; otherwise significantly different results are found even at the 1% level. Calculated and observed mean square amplitudes compare favourably.     

Molecular structure and conformation of 2,3-dichloro-1-propene as determined by gas-phase electron diffraction

The molecular structure and conformation of 2,3-dichloro-1-propene have been determined by gas-phase electron diffraction at nozzle temperatures of 24, 90 and 273°C. The molecules exist as a mixture of two conformers with the chlorine atoms anti (torsion angle ∠φ = 0°) or gauche (∠φ = 109°) to each other and with the anti form the more stable. The composition (mole fraction) of the vapor with uncertainties estimated at 2σ was found to be 0.55 (0.08), 0.49 (0.08) and 0.41 (0.10) at 24, 90 and 273°, respectively. These values correspond to an energy difference with estimated standard deviation ΔE° = E°_g-E°_a = 0.7 ± 0.3 kcal mol^?1 and an entropy difference ΔS° = S°_g-S°_a = 0.6 ± 0.9 cal mol^?1 K^?1. Some of the diffraction results, together with spectroscopic observations, permit the evaluation of an approximate torsional potential function of the form 2V = V₁ (1 - cos φ) + V₂ (1 - cos 2φ) + V₃ (1 - cos 3φ); the results are V₁ = 4.4 ± 0.5, V₂ = ?2.9 ± 0.5 and V₃ = 4.8 ± 0.2, all in kcal mol^?1. The results at 24°C for the distance (r_a) and angle (∠_α) parameters, with estimated uncertainties of 2σ, are: r(C_sp²-H) = 1.098(0.020)Å, r(C_sp³-H) = 1.103(0.020)Å, r(CC) = 1.334(0.009)Å, r(C-C) = 1.504(0.013)Å, r(C_sp²-Cl) = 1.752(0.021)Å, r(C_sp³-Cl) = 1.776(0.020)Å, ∠C-CC = 127.6(1.1)°, ∠C_sp³-C_sp²-Cl = 110.2(1.0), ∠C_sp²-C_sp³-Cl = 113.1(1.2)°, ∠H-C_sp³-H = 109.5° (assumed), ∠CC-H = 120.0° (assumed) and ∠φ = 108.9(3.4)°.     

Molecular structure of 2,2,4,4,6,6-hexamethyl-1,3,5-trimethylenecyclohexane as determined by gas-phase electron diffraction

The molecular structure of 2,2,4,4,6,6-hexamethyl-1,3,5-trimethylenecyclohexane has been determined in the gas phase at a nozzle tip temperature of 340 K. The electron diffraction data were found to be consistent with a model where the cyclohexane ring adopts a distorted twist-boat conformation. The averaged geometrical parameters (r(g) and 90 degree angle (alpha)) obtained from least squares analysis are r(C=C) = 1.346(4) A, r(C-C)(ring) = 1.537(1) A, r(C-C)(Me) = 1.543(1) A, 90 degree angle C(6)C(1)C(2) = 117.5(11) degrees, 90 degree angle C(1)C(2)C(3) = 113.1(12) degrees, and 90 degree angle MeCMe = 108.2(13) degrees. The experimental results are consistent with the results from HF/6-311G(d) and MP2/6-311G(d) calculations where the distorted twist-boat form is found to be lower in energy than the chair form by 9.85 and 10.7 kcal/mol, respectively.     

The gas-phase molecular structure of silyl chloroacetylene,determined by electron diffraction

The molecular structure of SiH₃CCCl in the gas phase has been investigated using electron diffraction. Mean amplitudes of vibration and perpendicular amplitude correction factors calculated from spectroscopic data enabled refinement of both r_a and r_α structures to be carried out. The r_α refinement leads to a linear skeleton, with r_α parameters: r(Si-C) 181.2(5) pm, r(CC) 123.4(6) pm, r(C-Cl) 162.0(5) pm, r(Si-H) 148.8(12) pm, ∠HSiC 109.4(20)°. The r_a structure shows an apparent angle in the skeleton of 172(3)° (∠CCCl) owing to shrinkage.     

The gas-phase molecular structure of methyl formate,determined by electron diffraction

The structure of methyl formate in the gas phase has been reinvestigated by electron diffraction. The results confirm that the molecular skeleton is cis-planar, with bond lengths and angles in close agreement with those found by microwave techniques. Principal parameters (r_a) are: r(CO) 120.2(2) pm, r(C-O) 134.0(2), and 143.5(3) pm; ∠ (OC-O) 125.4(5)°, and ∠ (C-O-C) 115.9(5)°.     

3-chloro-1-butene: gas-phase molecular structure and conformations as determined by electron diffraction and by molecular mechanics and ab initio calculations

Gaseous 3-chloro-1-butene has been studied experimentally by electron diffraction (ED) at 20 and 180°C, and at these temperatures, 76(10)% and 62(10)%, respectively, of the most stable conformer i.e. the one having a hydrogen atom eclipsing the double bond, were found. The conformer with the chlorine atom eclipsing the C=C bond was also present. However, from the experimental data it was not possible to establish conclusive evidence for the conformer with an eclipsed CH₃ group. Molecular mechanics (MM) calculations and ab initio calculations using a 4-21 basis set were carried out with complete geometry optimization, and calculated parameters from each of the methods were used in combination with the ED data. Such calculations indicated the existence of all three conformers mentioned above. Least-squares analysis including constraints from the ab initio calculation gave as a result the following molecular structure (r_a distances and ??? angles) for the predominant conformer: r(C=C) = 1.337(6) Å, r(=C---C) = 1.503(4) Å, r(C---CH₃) = 1.522 Å, R(C---Cl) = 1.813(4) Å, <r(C---H)> = 1.089(18) Å, ???C=C---C = 122.9(2.1)°, ???C---C---C = 112.6(2.2)°, ???=C---C---Cl = 109.9(0.2)°, ???Cl---C---CH₃ = 109.3°. = 121.9° and = 110.0(1.3)°. The torsional angles were then τ(C=C---C---Cl> = −119.4° and τ(C=C---C---CH₃) = 120.3(2.1)°. Error limits are 2σ (σ includes estimates of systematic errors and correlations), parameters without quoted uncertainties are dependent or were constrained relative to another parameter. Combining the ED data with MM results yielded parameters consistent with those given above.     

The molecular structure of fluoromalononitrile as determined by gas-phase electron diffraction and ab initio calculations

The molecular structure of fluoromalononitrile was studied by means of gas-phase electron diffraction and quantum mechanical methods using HF/6-31G(d), MP2/6-311++G(2df,2pd) and DFT/B3LYP/6-31G(d), B3PW91/6-31G(d), B3LYP/6-311++G(2df,2pd) and B3PW91/6-311++G(2df,2pd). The r(g) and angle(alpha) structural parameters we obtained from the present analysis are: CC=1.487(5) A, CN=1.157(3) A, CF=1.386(5) A, CH=1.096 A (ass.), angleCCC=106.7(1.0) degrees , angleCCF=108.0(0.7) degrees , angleCCN=177.6(2.0) degrees . Uncertainties in parenthesis are 3sigma.     

The molecular structure and pseudorotational motion of 1,1-difluorosilacyclopetane as determined by gas-phase electron diffraction

The structure of 1,1-difluorosilacyclopentane has been studied by gas-phase electron diffraction. The molecule is found to have a barrier of pseudorotion of 2.25(90) kcal mol⁻¹. The potential function has minimum at the twist form (C₂) symmetry and maxima at the envelope forms. The major bond distances (itr)_g) and valence angles obtained from the least-squares refinements with error estimates are as follow: r(C---H) = 1.128(7) A, r(C---C)_av = 1.553(15) A, r(Si---F) = 1.582(6) A, r(Si---C) = 1.853(3) A, (CSiF) = 113.4′(3), CCC = 106°(1), and Tau(C1C2C3C4) = 56.0°(32).     

The molecular structure and conformation of trichloronitromethane as determined by gas-phase electron diffraction and theoretical calculations

The molecular structure of trichloronitromethane has been studied in the gas phase using electron diffraction data. The molecules are found to undergo low barrier rotation about the CN bond with a planar CNO₂ moiety in agreement with HF/MP2/B3LYP/6-311G(d,p) calculations. The experimental data are consistent with a dynamic model using a potential function for the torsion of V = (V₆/2)(1 − cos 6τ). The major geometrical parameters (r_g and ) for the eclipsed form, obtained from least squares analysis of the data are as follows: r(NO₃) = r(NO₄) = 1.213(2) Å, r(CN) = 1.592(6) Å, r(CCl)_av = 1.749(1) Å, Cl₅CN/Cl₆CN = 109. 6°/106.3°(2), O₃NC/O₄NC = 117. 6°/114.1°(4), τCl₅C₁N₂O₃ = 0.0°, and V₆ = 0.20(25) kcal/mol.     

1,1,2,2-tetrabromodisilane: gas-phase molecular structure and conformational composition as determined by electron diffraction

The molecular structure of 1,1,2,2-tetrabromodisilane has been investigated using gas-phase electron diffraction data obtained at 110°C. At this temperature the molecules exist as a mixture of about equal parts (X = 0.5 ±0.2) of the two conformers with the H---Si---Si---H torsion angle equal to 180° (anti) or 60° (gauche). Assuming that the two conformers differ in their geometries only in the torsion angle φ, some of the important distance (r_a) and angle () parameters are: r(Si---Si) = 2.349(19) Å, r(Si---Br) = 2.205(5) Å, r(Si---H) = 1.485 Å (assumed), Br---Si---Br = 110.1(1.6)°, Si---Si---Br = 107.1(1.2)° Si---Si---H = 108.6° (assumed). The error limits are 2σ. The observed conformational composition (X_anti = 0.5(0.2)) corresponds to an energy difference between the conformers of ΔE = E(gauche) — E(anti) = 0.5 ± 0.6 kcal mol⁻¹, assuming ΔS = Rln2.     

Molecular structure and conformation of chloronitromethane as determined by gas-phase electron diffraction and theoretical calculations

The molecular structure of chloronitromethane was studied in the gas phase at a nozzle-tip temperature of 373 K. The experimental data were interpreted using a dynamic model where the molecules are undergoing torsional motion governed by a potential function: V = V2/2x(1 - cos 2tau) + V4/2x(1 - cos 4tau) with V2 = 0.81(30) and V4 = 0.12(40) kcal/mol (tau is the dihedral angle between the C-Cl and N-O bond). The conformer with a zero degree dihedral angle is the most stable conformer. Comparison with results from HF/MP2/B3LYP 6-311G(d,p) calculations were made. The important geometrical parameter values (for the eclipsed form) obtained from least-squares refinements are the following: r(C-H) = 1.061(18)A, r(C-N) = 1.509 (5)A, r(N-O) = 1.223(1)A, r(C-Cl) = 1.742(2)A, angleClCN = 115.2(7) degrees, angleO4NC = 118.9(10) degrees, angleO5NC = 114.9(16) degrees, and angleClCH 115(4) degrees.     

The molecular structure of cyclohexanone determined by gas-phase electron diffraction,including microwave data

The electron diffraction data for gaseous cyclohexanone, collected at 371 K, combined with microwave rotational constants, can be explained by a single chair conformation. Least-squares analysis of the observed data led to an r_g, r_α-structure with the following geometrical parameters: r_CO = 1.229 Å, r_C1C2 = 1.503 Å, r_C1C2 = 1.542 Å, r_C3C4 = 1.545 Å, r_CH = 1.088 Å, ∠ C-CO-C = 115.3°, ∠ CO-C-C = 111.5°, ∠ C-C-C = 110.8°, ∠ H-C-H = 106°. The sp₂ -hybridized part of the ring is less puckered, whereas the sp³ part is more puckered than in cyclohexane.     

Molecular structure of propargylgermane (2-propynylgermane) determined by gas-phase electron diffraction and quantum chemical calculations

The molecular structure of propargylgermane, HCCCH₂GeH₃, has been determined by gas-phase electron diffraction. The electron-diffraction investigation has been supported by density functional theory and ab initio calculations. The r_a value of the bond lengths (pm) are: r(C–Ge)=197.2(1); r(C–C)=143.9(2); r(CC)=123.1(1); r(H–C_acetylene)=108.5(3); r(C–H)=111.6(3) and r(Ge–H_average)=153.7(2). The Ge–C–C angle is 111.7(1)° and the C–CC angle is 178.3(4)°. The uncertainties are one standard deviation from the least-squares refinement.     

The structure of 1-methyl-1-silaadamantane as determined by gas phase electron diffraction

The structure of 1-methyl-1-silaadamantane (MSA) has been determined by gas phase electron diffraction. There appears to be somewhat less ring strain at the silicon bridgehead of MSA than in the previously studied 1-methyl-1-silabicyclo[2.2.1]heptane (MSBH). The average SiC bond length [1.879(3) Å is comparable to those found in acyclic organosilicon systems. Also, the average CC bond length (1.547(2) Å) is only slightly longer than that observed for adamantane (1.540(2) Å). Valence angles at the silicon bridgehead experience only a moderate perturbation away from their unstrained tetrahedral values. On this basis it is expected that MSA should be somewhat less reactive than MSBH under S_N2 conditions according to the reaction mechanism suggested by L.H. Sommer.     

The gas-phase molecular structure of 1,1-diethynylsilacyclobutane as determined by means of electron diffraction and ab initio calculations

As a continuation of our systematic investigation of the effect of substituents on the ring geometry and dynamics in silacyclobutanes and in order to explore the role of the silicon atom as a mediator for electronic interactions between the attached fragments, we studied the molecular structure of 1,1-diethynylsilacyclobutane (DESCB) by means of gas-phase electron diffraction and ab initio calculations. The structural refinement of the electron diffraction data yielded the following bond lengths (r_a) and bond angles (uncertainties are 3σ): r(Si–C)=1.874(2) Å, r(Si–C)=1.817(1) Å, (C–Si–C)=79.2(6)°, (C–Si–C)=106.5(6)°. The geminal Si–CC moieties were found to be bent outwards by 3.1(15)° and the puckering angle was determined to be 30.0(15)°. The evidently short Si–C bond length, which was also reproduced by the ab initio calculations, could be rationalized as being the consequence of the electronic interaction between the outer π charges of the triple bond and the 3pπ orbitals at the silicon atom. It is also likely that the conjugation of the geminal ethynyl groups leads to an enhancement of this bond contraction. Electrostatic interactions and the subsequent reduction of the covalent radius of the silicon atom may also contribute to this bond shortening. It has been found that the endocyclic Si–C bond length fits nicely within a scheme describing a monotonous decrease of the Si–C bond length with the increase of the electronegativity of the substituent in various geminally substituted silacyclobutanes.A series of related silacyclobutanes and acyclic diethynylsilanes have been studied by applying various ab initio methods and their optimized structures were compared to the structure of DESCB. Among these compounds are 1,1-dicyanosilacyclobutane (DCYSCB), which is isoelectronic to DESCB, 1,1-diethynylcyclobutane (DECB) which is isovalent to DESCB, monoethynylsilacyclobutane (MESCB) and monocyanosilacyclobutane (MCYSCB). Searching for reasonable support for the explanation of the structural results of DESCB we performed detailed natural population analysis as well as Mulliken population analysis (MPA) on DESCB and other related molecules. In contrast to the Mulliken charges, the natural atomic charges provided helpful information concerning the bonding properties in DESCB and the corresponding compounds. By varying the size of some basis sets, we could demonstrate the validity of the repeatedly discussed dependency of the Mulliken MPA on the basis set.For the performance of the quantum mechanical calculations we employed the following methods and basis sets: HF/6-31G(d,p), DFT/B3PW91/6-31G(d), DFT/B3PW91/6-311++G(d,p), MP2/6-31G(d,p) and MP2/6-311++G(d,p).     

The molecular structure of trifluoroethene in the gas-phase as determined from electron diffraction and microwave data

The molecular structure of trifluoroethene was determined from electron diffraction data and the microwave rotational constants of the parent and deuterated molecule, corrected for zero-point vibrational motion. A GVFF adjusted to fit the vibrational frequencies was used for the correction. The molecule was found to be planar. Assuming equal geminal C1—F bond lengths, the following r_g distances and r_av angles are found: C1—F = 1.316 ± 0.011 Å, C2—F = 1.342 ± 0.024 Å, CC = 1.341 ± 0.012 Å, C—H = 1.100 ± 0.02 Å, ∠C—C—F1 = 123.1 ± 1.5°. ∠C—C—F2 = 124.0 ± 0.6°, ∠C—C—F3 = 120 ± 0.7° (Fl trans to F3) and ∠C—C—H = 124.0 ± 1.7°.The error limits include 3σ (σ = estimated standard deviation) and estimates of the systematic errors. The analysis suggests that all the C1—F distances are not equivalent, neither are the C2—C1—F angles, though the differences are not significant (10% level).     

The gas-phase molecular structure of 1-fluorosilatrane from electron diffraction

The molecular geometry of 1-fluorosilatrane has been determined by gas-phase electron diffraction. The distance between the nitrogen and silicon atoms is much longer in the gas phase, viz., 2.324±0.014 Å, than in the crystal, 2.042 (1) Å [5]. This indicates a weakened donor-acceptor interaction possibly as a consequence of the absence of intermolecular interactions in the gas phase. The five-membered rings take envelope conformations with the carbon atoms adjacent to nitrogen at the envelope tips. The following bond distances ( _g , Å) and bond angles (°) were obtained with their estimated total errors: N-C, 1.481±0.008; C-C, 1.514±0.011; O-C, 1.392±0.004; Si-O, 1.652±0.003; Si-F, 1.568±0.006; C-H, 1.118±0.005; N-C-C, 104.5±0.6; C-C-O, 117.0±0.7;C-O-Si, 123.7±0.6; O-Si-F, 98.7±0.3; O-Si-O, 117.8±0.1; C-N-C, 115.0±0.3.