Formation of ionic associates from oppositely charged calix[4]resorcinarene host molecules in the presence of guest molecules

The conditions for the formation and existence of capsular dimeric associates in a solution were studied. The associates are formed by the oppositely charged resorcinarene derivatives (tetrakis(dimethylaminomethyl)calix[4]resorcinarene hydrochloride and tetrakis(sulfonato- methyl)calix[4]resorcinarene). Possibilities of formation of a capsule in the presence of the molecules giving inclusion complexes with one of the macrocycles were considered. Switching between two states “capsular associate—mixture of original macrocycless” is achieved by controlling the ionic strength of the solution. The interaction of the host—guest complexes with complementary resorcinarene leads to capsular associate closure with the synchronous displacement of the guest molecules into the aqueous solution bulk.     

Origin of “cold” water molecules in the composition of low-molecular-mass products of the mechanical fracture of poly(methyl methacrylate)

A hypothesis on the correlation between the origin of “cold” (∼53 K) water molecules released by a growing crack and a low (∼123 K) temperature of stretched and then thermoelastically cooled polymer chains that ruptured at the crack top is advanced. A mechanism behind the formation of “cold” water molecules is suggested. It includes their “soft” desorption due to mechanical action onto thermoelastically cooled side groups with adsorbed cooled water molecules from an unloading wave that is induced by the rupture of the main chain and that travels along it.     

Multivariate standard addition method solved by net analyte signal calculation and rank annihilation factor analysis

This article describes the use of the net analyte signal (NAS) concept and rank annihilation factor analysis (RAFA) for building two different multivariate standard addition models called “SANAS” and “SARAF.” In the former, by the definition of a new subspace, the NAS vector of the analyte of interest in an unknown sample as well as the NAS vectors of samples spiked with various amounts of the standard solutions are calculated and then their Euclidean norms are plotted against the concentration of added standard. In this way, a simple linear standard addition graph similar to that in univariate calibration is obtained, from which the concentration of the analyte in the unknown sample and the analytical figures of merit are readily calculated. In the SARAF method, the concentration of the analyte in the unknown sample is varied iteratively until the contribution of the analyte in the response data matrix is completely annihilated. The proposed methods were evaluated by analyzing simulated absorbance data as well as by the analysis of two indicators in synthetic matrices as experimental data. The resultant predicted concentrations of unknown samples showed that the SANAS and SARAF methods both produced accurate results with relative errors of prediction lower than 5% in most cases.     

Comparability of measurement results for pesticide residues in foodstuffs: an open issue?

The dispersion of results from proficiency tests for the analysis of pesticide residues in foodstuffs suggests that improvements in the compatibility of measurement results are needed. Currently observed divergences can make the evaluation conclusion on foodstuffs compliance with certain legislation dependent on the consulted laboratory. This work discusses the origin and impact of this lack of compatibility, following the metrological concepts presented at the latest version of the “International Vocabulary of Metrology” (VIM3), thus allowing for a clear diagnostic of the problem. The reporting of results from different measurement methods uncorrected for the observed analyte recovery makes them traceable to different “operationally defined measurement procedures” (VIM3) and, therefore, not comparable. When results from different measurement methods are reported corrected for analyte recovery, R, and R is different for spiked and incurred residues, measurement results may be not compatible if this effect is not considered on the uncertainty budget. This discussion is illustrated with metrological models for any possible combination of “measurement performance” and “maximum residue level”. These models are complemented with experimental data of the analysis of pesticide residues in a sample of ginseng powder from a proficiency test. The adopted experimental design allowed the identification of additional threats to metrological compatibility in this field. Solutions to the faced problem are discussed for practicability and impact on regulatory issues. The use of a universal “reference measurement procedure” proves to be the most feasible way of ensuring comparability of measurements in this field.     

Urine dry reagent strip “error” rates using different reading methods

 The need for “quality” in near patient testing (NPT) has been acknowledged since the mid 1980s. The commonest biochemical NPT device is the dry reagent strip or “dipstick” for urinalysis. Dipsticks may be read in three ways, against the color chart printed along the side of the bottle, using a benchreader (the color chart printed on a flat card) or using an electronic reader. This report uses the results of a urinalysis quality assurance (QA) program, over 1998, to evaluate the “error” rates which occur using the three different reading methods. The QA samples are buffered aqueous solutions which are “spiked” to give concentrations midway between two color blocks for each analyte. Results are scored as ±1 if a color block adjacent to the target value, ±2 for results two color blocks (defined as “error”) and ±3 for results three color blocks (defined as “gross error”) from the target value. Analysis of the results show that the error rates are similar reading visually by either method, but greatly reduced when read electronically. Some persisting errors when using the electronic reader are explained by observation studies. The study highlights the value of a urinalysis QA program for NPT urinalysis in understanding the error rates of this simple but ubiquitous test. Received: 10 July 2000 / Accepted: 10 July 2000     

Study on molecular interactions between proteins on live cell membranes using quantum dot-based fluorescence resonance energy transfer

Mouse anti-human CD71 monoclonal antibody (anti-CD71) was conjugated with red quantum dots (QDs; 5.3 nm, emission wavelength λ _em = 614 nm) and used to label HeLa cells successfully. Then green QD-labeled goat anti-mouse immunoglobulin G (IgG; the size of the green QDs was 2.2 nm; λ _em = 544 nm) was added to bind the red-QD-conjugated anti-CD71 on the cell surface by immunoreactions. Such interaction between anti-CD71 and IgG lasted 4 min and was observed from the fluorescence spectra: the fluorescence intensity of the “red” peak at 614 nm increased by 32%; meanwhile that of the “green” one at 544 nm decreased by 55%. The ratio of the fluorescence intensities (I _544 nm/I _614 nm) decreased from 0.5 to 0.2. The fluorescence spectra as well as cell imaging showed that fluorescence resonance energy transfer took place between these two kinds of QDs on the HeLa cells through interactions between the primary antibody and the secondary antibody.     

Clustering of pentacene and functionalized pentacene ions in a matrix-assisted laser desorption/ionization orthogonal TOF mass spectrometer

A high-performance orthogonal time-of flight (TOF) mass spectrometer, in combination with the matrix assisted laser desorption/ionization (MALDI) source operating at elevated pressure (∼1 torr in N₂), was used to perform MALDI-TOF analyses of pentacene and some of its derivatives with and without an added matrix. These molecules are among the most interesting semiconductor materials for organic thin film transistor applications (OTFT). The observation of ion-molecule reactions between “cold” analyte ions and neutral analyte molecules in the gas phase has provided some insight into the mechanism of pentacene cluster formation and its functionalized derivatives. Furthermore, some of the matrices employed to assist the desorption/ionization process of these compounds were observed to influence the outcome via ion-molecule reactions of analyte ions and matrix molecules in the gas phase. The stability and reactivity of the compounds and their clusters in the MALDI plume during gas-phase expansion were evaluated; possible structures of the resulting clusters are discussed. The MALDI-TOF technique was also helpful in distinguishing between two isomeric forms of bis-[(triisopropylsilyl)-ethynyl]-pentacene.     

Quantum-Chemical Study of “Hydride” Mobility in the Molecules of Chalcogenopyrans

An approach is proposed for the quantum-chemical investigation of “hydride ion” transfer based on analysis of the similarity of the order of variation in the ionization potentials, enthalpies, and free energies of affinity to the hydride ion, the hydrogen atom, and the proton in the substrate molecules and also the derivatives of their cations, radicals, and ions to the experimentally established “hydride” series. It was established that the experimental “hydride” mobility series of six chalcogenopyrans based on “semicyclic” 1,5-diketones agrees with the quantum-chemically calculated ionization potentials of the molecules and with the affinity of the respective radicals to the hydrogen atom participating in the transfer. It was found that direct removal of a hydride ion and initial deprotonation of the substrates followed by the removal of two electrons are unlikely. “Hydride” shift mechanisms, in which the first stage is transfer of an electron or hydrogen atom from the chalcogenopyran molecules, are feasible. __________ Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 9, pp. 1305–1311, September, 2005.     

Surface functionalization via in situ interaction of plasma-generated free radicals with stable precursor-molecules on cellulose

The surface functionalization process was accomplished in a consecutive 3 step process including: (1) Argon- and oxygen-plasma enhanced generation of free radical sites on cellophane surfaces; (2) “In situ” gas phase derivatization in the absence of plasma using hydrazine, ethylene diamine, or propylene diamine; (3) Second “in situ”, gas phase derivatization in the absence of plasma using oxallyl chloride or “ex situ” derivatization in the presence of glutaraldehyde. The presence of free radical sites on the plasma exposed cellophane surfaces was demonstrated using “in situ” sulfur dioxide and nitric oxide labeling techniques. It was shown that the free radical sites readily react under “in situ” conditions with the stable chain-precursor components and generate the desired spacer-chain molecules. ESCA, ATR-FTIR analysis and dying techniques were used to monitor the cellophane surface changes. A factorial design was used for selecting the optimal plasma parameters. Functionalized cellophane substrates were used for immobilization of α-chymotrypsin in the presence of spacer-chain molecules. The activity of the immobilized α-chymotrypsin was found to be lower in comparison to the activity of the free enzyme and the presence of virgin cellophane in the free enzyme solution also reduced significantly the activity of the enzyme. It is suggested that the swollen state of the cellophane plays a significant role in the decrease of the immobilized enzyme activity.     

Synthesis,characterizations, and optical properties of copper selenide quantum dots

We demonstrate the synthesis of copper selenide quantum dots (QDs) by element directed, inexpensive, straight forward wet chemical method which is free from any surfactant or template. Copper selenide QDs have been synthesized by elemental copper and selenium in the presence of ethylene glycol, hydrazine hydrate, and a defined amount of water at 70 °C within 8 h. The product is in strong quantum confinement regime, phase analysis, purity and morphology of the product has been well studied by X-ray diffraction (XRD), UV–Visible spectroscopy (UV–Vis), Photo-luminescent spectroscopy (PL), Fourier transform infrared spectroscopy (FTIR), Transmission electron microscopy (TEM), High resolution transmission electron microscopy (HRTEM), and by Atomic force microscopy (AFM) techniques. The absorption and photoluminescence studies display large “blue shift”. TEM and HRTEM analyses revealed that the QDs diameters are in the range 2–5 nm. Due to the quantum confinement effect copper selenide QDs could be potential building blocks to construct functional devices and solar cell. The possible mechanism is also discussed.     

Selective binding behavior of nonaromatic oligopeptides by aromatic diamino-bridged bis(β-cyclodextrin)

Abstract  

Binding behavior of 4,4′-ethylenedianiline-bridged bis(6-amino-6-deoxy-β-cyclodextrin) with seven nonaromatic oligopeptides, i.e., Leu-Gly, Gly-Leu, Glu-Glu, Met-Met, Gly-Gly, Gly-Gly-Gly, and Gly-Pro, was investigated at 25 °C in phosphate buffer (pH 7.20) by fluorescence and 2D NMR spectroscopy. The result obtained from the ROESY spectrum shows that the phenyl moieties in the linker of the bis(β-cyclodextrin) are partly self-included in the cyclodextrin cavity and are entirely expelled out of the cyclodextrin cavity upon complexation with guest oligopeptides. Owing to the cooperative “cyclodextrin–guest–cyclodextrin” sandwich binding mode, the bis(β-cyclodextrin) exhibits relatively high sequence selectivity up to 5.3 for the Gly-Leu/Leu-Gly pair and length-selectivity up to 4.6 for the Gly-Gly-Gly/Gly-Gly pair. The molecular binding ability and selectivity are discussed from the viewpoints of induced fit and multiple recognition between host and guest.     

An activated carbon substrate surface for laser desorption mass spectrometry

A method to obtain laser desorption/ionization mass spectra of organic compounds by depositing sample solutions onto a carbon substrate surface is demonstrated. The substrate consists of a thin layer of activated carbon particles immobilized on an aluminum support. In common with the porous carbon suspension samples used in previous “surface-assisted laser desorption/ionization” (SALDI) work, the mass spectra contain only a few “matrix” background ion peaks, minimizing interference with analyte ion peaks. The presence of glycerol ensured that the ion signals were stable over hundreds of laser shots. In addition, the carbon substrate surface has several advantages over the suspension samples. The use of a very thin layer of carbon significantly improves the sensitivity. Detection limits range from attomoles for crystal violet to femtomoles for bradykinin. Very little sample preparation is required as the analyte solution is simply pipetted onto the substrate surface and glycerol added. When using an alternate sample deposition method, a mass resolution for bradykinin of 1800 is achieved in linear time-of-flight mode. This is close to the resolution limit set by the detector system and above instrument specification for matrix-assisted laser desorption/ionization mass spectra.     

Molecular recognition of aliphatic oligopeptides by aromatic diamine-bridged bis(<Emphasis Type="Italic">β</Emphasis>-cyclodextrin)

Binding behavior of 4,4′-diaminodiphenyl ether-bridged-bis (6-amino-6-deoxy-β-cyclodextrin) 1 with the aliphatic oligopeptides, i.e., Leu-Gly, Gly-Leu, Glu-Glu, Met-Met, Gly-Gly, Gly-Gly-Gly, and Gly-Pro was investigated at 25°C in phosphate buffer (pH 7.20) by fluorescence and 2-D NMR spectroscopy. Owing to the cooperative “cyclodextrin-guest-cyclodextrin” sandwich binding mode, bis(β-cyclodextrin) 1 not only afford high binding constants of up to 10³–10⁴ M⁻¹ for guest oligopeptides, but can also recognize the size and hydrophobicity of oligopeptides. As a result of multiple recognition mechanisms, bis(β-cyclodextrin) 1 gives high length-selectivity up to 5.8 for the Gly-Gly-Gly/Gly-Gly pair and sequence-selectivity up to 2.8 for the Gly-Leu/Leu-Gly pair, respectively. The molecular binding ability and selectivity are discussed from the viewpoints of induced-fit and multiple recognition between host and guest.     

Biomimetic PLGA sensor: proof of principle and application

Abstract  

Spoilage of products can mainly be attributed to microorganisms which “live on the product”, i.e. which are able to utilize and/or metabolize components and/or molecules of the product. The objective of this work was to develop and optimize sensor prototypes indicating the quality of a product “in real time”, i.e. at the time the consumer is looking at the product. The design of the presented sensors relates to optical phenomena, for example anomalous absorption and remission of light. The crucial point of the sensor prototypes is a layer sensitive to the analyte, a polymer degradable by enzymes produced by the respective microorganisms. After incubation of the sensor setup with contaminated products, the lytic enzymes released from decaying cell material change the thickness of the polymer layer and generate a colour change visible by the naked eye. Production of the sensor prototypes is very simple and inexpensive and they might be successfully integrated into product packaging.     

Modeling the cluster formation during infrared and ultraviolet matrix-assisted laser desorption ionization of oligonucleotides in succinic acid matrix with molecular mechanics

A large succinic acid (HOOC(CH₂)₂COOH) matrix containing 7 × 7 × 7 unit cells with guest oligonucleotide AGCAGCT was modeled with molecular dynamics simulation for infrared matrix-assisted laser desorption ionization. We simulated the laser heating of the succinic acid (this data is still missing from the literature) with λ=2.94 μm infrared laser pulses and compared it to ultraviolet excitation. We did this in order to elucidate the cluster formation of succinic acid in the gas phase in itself and around the analyte. At this wavelength, the laser energy is coupled into the matrix through the OH vibrations of the carboxyl groups. The most pronounced difference we observed at 1,500 K simulation is that infrared heating generates about 10–15 more succinic acid molecules bound to the analyte in noncovalent complex form than the ultraviolet mode, which generates about 2 molecules thus bound. We report energy redistribution within the matrix between the host and guest species as well as other dynamical properties. The parameter and topology data for succinic acid that we used are reported and ready for use in CHARMM computer code environment for simulation. Revised: 12 October 2001 / Accepted: 27 February 2002 / Published online: 13 June 2002     

Underestimation of total arsenic concentration in groundwater samples determined by hydride generation quartz furnace atomic absorption spectrometry due to sample characteristics

Total arsenic concentrations in groundwater samples determined by hydride generation quartz furnace atomic absorption spectrometry may underestimated due to a loss of quartz cell surface “conditioning.” This loss of quartz cell surface “conditioning” is due to the analysis of many samples that do not contain measurable quantities of the analyte. This process is further accelerated by the use of high concentrations of sodium tetrahydroborate and hydrochloric acid. Analysis of the highest calibration standard in between the samples and the use of low concentrations of sodium tetrahydroborate and hydrochloric acid could minimize the error arising from this source.     

Multivariate analysis of HT/GC-(IT)MS chromatographic profiles of triacylglycerol for classification of olive oil varieties

The ability of multivariate analysis methods such as hierarchical cluster analysis, principal component analysis and partial least squares-discriminant analysis (PLS-DA) to achieve olive oil classification based on the olive fruit varieties from their triacylglycerols profile, have been investigated. The variations in the raw chromatographic data sets of 56 olive oil samples were studied by high-temperature gas chromatography with (ion trap) mass spectrometry detection. The olive oil samples were of four different categories (“extra-virgin olive oil”, “virgin olive oil”, “olive oil” and “olive-pomace” oil), and for the “extra-virgin” category, six different well-identified olive oil varieties (“hojiblanca”, “manzanilla”, “picual”, “cornicabra”, “arbequina” and “frantoio”) and some blends of unidentified varieties. Moreover, by pre-processing methods of chemometric (to linearise the response of the variables) such as peak-shifting, baseline (weighted least squares) and mean centering, it was possible to improve the model and grouping between different varieties of olive oils. By using the first three principal components, it was possible to account for 79.50% of the information on the original data. The fitted PLS-DA model succeeded in classifying the samples. Correct classification rates were assessed by cross-validation.     

Stereochemical analysis by simplex representation of molecules

Stereoanalysis of molecules by partitioning a spatial structure into a system of simplices is described in detail. Potentialities of simplex representation of molecules in defining stereochemistry are demonstrated for chiral structures of various complexity and planar unsaturated molecules (“two-dimensional stereochemistry”). A concept of “stereochemical charge” is introduced. A. V. Bogatskii Physicochemical Institute, Ukrainian Academy of Sciences. Odessa State University. Translated fromZhurnal Strukturnoi Khimii, Vol. 39, No. 3, pp. 553–558, May–June, 1998.     

Step wise and dissociative mechanisms of the electron transfer in electrochemical reactions involving organosilicon compounds: Molecular-thermodynamic approach1

Electrochemical reduction of organochlorosilanes and oxidation of hexaorganodisilanes may occur via dissociative and stepwise mechanisms, the choice between which is determined by the balance between fundamental structural parameters of elementoorganic molecules. The formation of radical anions of silyl-substituted chloromethane in the conditions of an electrochemical experiment is shown. The formation is due to α-silicon stabilization of the intermediate during the electron transfer. The role of conjugation and hyperconjugation in the organosilicon compounds’ reactivity is analyzed. When employing terms “ stepwise ” and “ dissociative ” mechanisms of the electron transfer, we follow tradition introduced and developed by J.-M. Saveant’s group [1] and recommended by the IUPAC Commission on Electrochemical Nomenclature [2]. The terms refer to an electrochemically reversible transfer of electron whose kinetics does not limit the process rate as a whole and to an electrochemically irreversible transfer which involves a bond cleavage in an elementary act of electron transfer. The term “ activation ” mechanism, which is sometimes applied to electrochemically irreversible processes, is more universal; however, it is somewhat not unique as compared with the term “ dissociative.” Coupled with “ associative,” the latter may be used for indicating processes that involve the formation of a bond in an elementary act of electron transfer.