LJUNGSKILE: a program for assessing uncertainties in speciation calculations

Speciation calculations are often the base upon which further and more important conclusions are drawn, e.g., solubilities and sorption estimates used for retention of hazardous materials. Since speciation calculations are based on experimentally determined stability constants of the relevant chemical reactions, the measurement and experimental uncertainty in these constants will affect the reliability of the simulation output. The present knowledge of the thermodynamic data relevant for predicting the behaviour of a complex chemical system is quite heterogeneous. In order to predict the impact of these uncertainties on the reliability of a simulation output requires sophisticated modelling codes. In this paper, we will present a computer program, LJUNGSKILE, which utilises the thermodynamic equilibrium code PHREEQC to statistically calculate uncertainties in speciation based on uncertainties in stability constants. A short example is included.     

Reference program for molecular calculations with Slater-type orbitals

A program for computing all the integrals appearing in molecular calculation with Slater-type orbitals is reported. The program is mainly intended as a reference for testing and comparing other algorithms and techniques. An analysis of the performance of the program is presented, paying special attention to the computational cost and the accuracy of the results. Results are also compared with others obtained with Gaussian basis sets of similar quality. © 1998 John Wiley & Sons, Inc. J Comput Chem 19: 1284–1293, 1998     

Ab initio calculations on furan with a new computer program

Two ab initio calculations with different basis sets have been performed on the molecule furan, C₄H₄O. The calculations were done with a new computer program, REFLECT, which is presented. A preliminary analysis of the molecular wave functions has been made by looking at total and orbital energies and also by means of a population analysis. One inner shell ionization energy has been calculated by taking the difference in total energy for the molecule and the corresponding ion. The result is compared with the ionization energy obtained from Koopmans' theorem.     

Optimization of the photochemical generation of trifluoronitromethane,CF3NO2, and a refined purification technique

The gas-phase photochemical generation of CF₃NO₂ from CF₃I and NO₂ was found to be equilibrium limited. The formation of CF₃NO₂ is favored at low pressure and high temperature, where the concentration of the reactive species NO₂ is the greatest, and unfavored at high pressure and low temperature, where the concentration of N₂O₄ is greatest. The results from varying the stoichiometric ratio of reactants, pressure, temperature, and reaction time in an attempted scale-up of this reaction are consistent with the reaction being equilibrium limited. The best reaction conditions allowed the generation of only 1–3 g of CF₃NO₂ per batch reaction in an approximate 16-L vessel. As long as reaction conditions are chosen so that all of the starting CF₃I is consumed, caustic scrubbing affords a significantly faster, less expensive, and more practical purification method than those previously published.     

Dynamics of photochemical reactions: Simulation by quantum calculations for transition metal hydrides

The photodissociation dynamics of some organometallic molecules in the lowest repulsive electronically states are reported for the following concurrent primary reactions: (i) the homolysis of a metal–hydrogen bond vs. the heterolytic loss of a carbonyl ligand in HCo(CO)₄; (ii) the photoinduced elimination of molecular hydrogen vs. the loss of a carbonyl ligand in H₂Fe(CO)₄; and (iii) the photoinduced elimination of molecular hydrogen vs. the loss of a mesithylene ligand in H₂Os(CO)Mes (Mes = C₆H₃(CH₃))₃. The dynamics are simulated quantum mechanically using a time-dependent wavepacket propagation technique on potential energy surfaces obtained from CASSCF /CCI calculations for HCo(CO)₄ and H₂Fe(CO)₄ and from SCF -INO /MRCI calculations for H₂Os(CO)Mes. This approach gives a rather detailed view of some important elementary processes that contribute to the photochemistry of these complexes. The nature of the photoactive excited states is determined without ambiguity, as well as the time scales, the branching ratio of the different primary dissociation pathways, and some features of the absorption spectra. © 1994 John Wiley & Sons, Inc.     

A new fast and fault-tolerant identification algorithm for spectral databases

A new method for an automatic, computer and database driven identification of UV/VIS spectra is described. It is shown that an identification algorithm must consider the spectral differences as well as their common features. The described identification method allows identifications, even if the spectra are distorted or shifted.     

Atomic spectral methods for molecular electronic structure calculations

Theoretical methods are reported for ab initio calculations of the adiabatic (Born-Oppenheimer) electronic wave functions and potential energy surfaces of molecules and other atomic aggregates. An outer product of complete sets of atomic eigenstates familiar from perturbation-theoretical treatments of long-range interactions is employed as a representational basis without prior enforcement of aggregate wave function antisymmetry. The nature and attributes of this atomic spectral-product basis are indicated, completeness proofs for representation of antisymmetric states provided, convergence of Schrodinger eigenstates in the basis established, and strategies for computational implemention of the theory described. A diabaticlike Hamiltonian matrix representative is obtained, which is additive in atomic-energy and pairwise-atomic interaction-energy matrices, providing a basis for molecular calculations in terms of the (Coulombic) interactions of the atomic constituents. The spectral-product basis is shown to contain the totally antisymmetric irreducible representation of the symmetric group of aggregate electron coordinate permutations once and only once, but to also span other (non-Pauli) symmetric group representations known to contain unphysical discrete states and associated continua in which the physically significant Schrodinger eigenstates are generally embedded. These unphysical representations are avoided by isolating the physical block of the Hamiltonian matrix with a unitary transformation obtained from the metric matrix of the explicitly antisymmetrized spectral-product basis. A formal proof of convergence is given in the limit of spectral closure to wave functions and energy surfaces obtained employing conventional prior antisymmetrization, but determined without repeated calculations of Hamiltonian matrix elements as integrals over explicitly antisymmetric aggregate basis states. Computational implementations of the theory employ efficient recursive methods which avoid explicit construction the metric matrix and do not require storage of the full Hamiltonian matrix to isolate the antisymmetric subspace of the spectral-product representation. Calculations of the lowest-lying singlet and triplet electronic states of the covalent electron pair bond (H(2)) illustrate the various theorems devised and demonstrate the degree of convergence achieved to values obtained employing conventional prior antisymmetrization. Concluding remarks place the atomic spectral-product development in the context of currently employed approaches for ab initio construction of adiabatic electronic eigenfunctions and potential energy surfaces, provide comparisons with earlier related approaches, and indicate prospects for more general applications of the method.     

MOVIPAC: Vibrational spectroscopy with a robust meta‐program for massively parallel standard and inverse calculations

We present the software package MO VI PAC for calculations of vibrational spectra, namely infrared, Raman, and Raman Optical Activity (ROA) spectra, in a massively parallelized fashion. MO VI PAC unites the latest versions of the programs SNF and AKIRA alongside with a range of helpful add‐ons to analyze and interpret the data obtained in the calculations. With its efficient parallelization and meta‐program design, MO VI PAC focuses in particular on the calculation of vibrational spectra of very large molecules containing on the order of a hundred atoms. For this purpose, it also offers different subsystem approaches such as Mode‐ and Intensity‐Tracking to selectively calculate specific features of the full spectrum. Furthermore, an approximation to the entire spectrum can be obtained using the Cartesian Tensor Transfer Method. We illustrate these capabilities using the example of a large π‐helix consisting of 20 (S)‐alanine residues. In particular, we investigate the ROA spectrum of this structure and compare it to the spectra of α‐ and 3₁₀‐helical analogs. © 2012 Wiley Periodicals, Inc.     

An improved program for molecular calculations with B functions

An improved version of a previously reported program for molecular calculations with B functions is presented. In this version, new algorithms for the three- and four-center electron repulsion integrals are used. The mathematical aspects of the algorithms are recognized and their performance analyzed. The results on full molecular calculations confirm the higher efficiency of the new algorithms in comparison with the old ones.     

Mixed benzohydroxamato-acetylacetonato metal complexes: spectral,thermal and photochemical behaviour

Summary Bis(acetylacetonato)VO^II,–Co^II,–Ni^II,–Cu^II,–Zn^II, –UO ₂ ^II and tris(acetylacetonato)Fe^III react with benzohydroxamic acid to yield the corresponding mixed ligand complexes as a result of displacement of one acetylacetone molecule. Intermolecular association may be the reason for six-coordination geometry around the metal ions. A t.g.a. study of the complexes shows, in most cases, initial loss of alcohol and water molecules associated with the complexes; subsequent decomposition steps are characterised by very sharp weight loss. The photochemical stability of the complexes has been studied. Intraligand excitation causes a decomposition in the case of Fe^III and VO^II-complexes but no detectable effect for Co^II, Ni^II, Cu^II, Zn^II, or UO ₂ ^II -complexes.     

New program for molecular calculations with Slater‐type orbitals

A new program for computing all the integrals appearing in molecular calculations with Slater‐type orbitals (STO) is reported. This program follows the same philosophy as the reference pogram previously reported but introduces two main changes: Local symmetry is profited to compute all the two‐electron integrals from a minimal set of seed integrals, and a new algorithm recently developed is used for computing the seed integrals. The new code reduces between one and two orders of magnitude the computational cost in most polyatomic systems. © 2001 John Wiley & Sons, Inc. Int J Quant Chem 81: 148–153, 2001     

FT-IR spectral data and ab initio calculations for haloketenes

Photolysis of haloacetyl chlorides isolated in cryogenic xenon matrix generates hydrochloric acid which is growing at the same rate as a ketene-like moiety. This last species is found to be different in the experiment involving fluoroacetyl and chloroacetyl chloride, from Fourier transform infrared (FT-IR) spectral results. The frequencies and intensities of the corresponding FT-IR spectral features are compared with the theoretical values obtained from ab initio calculations for fluoroketene HFCCO, chloroketene HClCCO and dichloroketene ClClCCO. The theoretical results give a satisfactory account of the haloketene HXCCO (X=F or Cl) assumption.     

A new program for CI calculations in molecules

Based on the formalism developed in a recent note, we have worked out a program for CI calculations in molecules. In the present note, the details of the program are discussed. The usefulness of the program has been illustrated using some calculations. On leave from the Indian Institute of Technology, Bombay, India.     

Thermal,photochemical and mass spectral reactions of 2-ethyl-5-methyl-1-pyrroline

Pyrolysis of 2-ethyl-5-methylpyrroline ( 1 ) results in formation of 2,5-dimethylpyrrole, 2-ethyl-5-methylpyrrole, 2-ethylpyrrole and other minor products. Loss of a hydrogen atom or methyl radicals is suggested as the first step in these reactions. Support for the former comes from hydrogen atom abstraction by photo-excited benzophenone. The mass spectral reactions of 1 are briefly considered.