Another look at magic-angle-detected fluorescence and emission anisotropy decays in fluorescence microscopy

It is shown that in contrast to a traditional fluorescence spectroscopy with the parallel beams of light, in which the kinetic fluorescence decays are collected at the so-called magic-angle of thetamag=54.7 degrees, in the fluorescence microscopy, the value of the magic-angle depends on the numerical aperture (NA) of a microscope objective and on the refractive index (n) of an immersion liquid used. Two methods enabling the determination of the magic-angle values corresponding to different values of NA/n, are discussed. It is shown that thetamag changes from a value of 54.7 degrees at the NA/n-->0, to a value of 45 degrees with NA/n-->1. Also in contrast to a traditional fluorescence spectroscopy, in the fluorescence microscopy the term I parallel(t)+2I perpendicular (t) does not represent the total fluorescence intensity Itot(t), because the resulting fluorescence decay I parallel(t)+2I perpendicular (t) is contributed by the dynamic evolution of excited fluorophores. A correctly defined total fluorescence intensity solely represents the kinetic evolution of excited fluorophores, and in the fluorescence microscopy it equals Itot(t)=3Imag(t), where Imag(t) represents the fluorescence intensity detected at thetamag corresponding to a particular NA/n value. If the correct (true) decay of Itot(t) is substituted into the denominator in the expression for the emission anisotropy r(t), r(t) is a (multi)exponential function of time and it accounts for the high-aperture excitation-detection conditions.     

Fluorescence anisotropy of acridinedione dyes in glycerol: Prolate model of ellipsoid

Time-dependent reorientations of resorcinol-based acridinidione (ADR) dyes in glycerol were studied using steady-state and time-resolved fluorescence studies. The difference between fluorescence anisotropy decays recorded at 460 nm when exciting at 250 nm and those obtained when exciting at 394 nm are reported. When exciting at 394 nm, the fluorescence anisotropy decay is bi-exponential, while on exciting at 250 nm a mono-exponential fluorescence anisotropy decay is observed. We interpret this in terms of different directions of the absorption dipole at 394 and 250 nm with the emission dipole respectively, which is experimentally validated and further analysed as a prolate model of ellipsoid.     

Picosecond emission anisotropy decays of dimethyl aminobenzonitrile

Picosecond polarized fluorescence experiments on DMABN (4-(dimethyl amino) benzonitrile) in polar solvents and toluene are reported. From the detected polarized fluorescence components emission anisotropy histograms are constructed and compared with the synthetic data simulated for the energy levels scheme in DMABN. For the short-wavelength emission of DMABN vibronic coupling between the close-lying S₁ and S₂ energy levels occurs and leads to a vibronically mixed polarization of the S₁ (F_B) fluorescence. Low initial values of the emission anisotropy decays for the long-wavelength (F_A) emission are observed. This observation can be explained by an assumption that the internal twisting of the amino group in DMABN changes the angular orientation of DMABN and by an assumption that the emission dipole moment in the F_A emission band is not parallel to the absorption dipole moment in the S₂ (¹L_a) absorption band.     

Polarized fluorescence spectra of poly(ethylene terephthalate) films

The polarized excitation and fluorescence spectra of lowcrystalline, isotropic poly(ethylene terephthalate) (PET) film samples were measured in the glassy state at room temperature. Whereas the emission anisotropy r₀ of the excitation spectrum, recorded at the fluorescence maximum, changes sharply from 0.35 to 0 with decreasing wavelength in the region around 317 nm, the polarization of the fluorescence spectrum of PET is independent of wavelength. The fluorescence polarization of PET remains constant, if the temperature is increased up to 22 °C above T_g until the light scattering due to the crystallization causes complete depolarization. The photophysical behaviour supports the existence of a dilute solution of groundstate - stable sandwich dimers in the non-crystalline regions of PET.     

STREAK CAMERA MEASUREMENT OF TRYPTOPHAN AND RHODAMINE MOTIONS WITH PICOSECOND TIME RESOLUTION

We have used a signal averaging laser (30 ps pulse)-streak camera system to measure fluorescence anisotropy decays of dyes in solution and protein tryptophan chromophores with picosecond time resolution. Emission polarization as a function of time can be measured directly and simultaneously for both polarization directions and stored in an optical multichannel analyzer. The corrected anisotropy is computed after background subtraction. Rotations of free dyes in solution (Sulforhodamine 101, tryptophan) and the temperature-dependent internal motions of human serum albumin (tryptophan emission) are displayed.     

Fluorescence of the DNA double helices (dAdT)n.(dAdT)n studied by femtosecond spectroscopy

Polymeric and oligomeric DNA helices, poly(dAdT).poly(dAdT) and (dAdT)(10).(dAdT)(10), composed of 200-400 and 20 adenine-thymine base pairs, respectively, are studied by fluorescence upconversion. Fluorescence decays, anisotropy decays and time-resolved spectra, obtained for this alternating base sequence, are compared with those determined previously for the homopolymeric sequence (dA)(n).(dT)(n). It is shown that identical fluorescence decays may correspond to quite different anisotropy decays and vice versa, both varying with the emission wavelength, the base sequence and the duplex size. Our observations cannot be explained in terms of monomer and excimer emission exclusively, as concluded in the past on the basis of steady-state measurements. Excitons also contribute to the fluorescence. These are rapidly trapped by excimers, characterized by long-lived weak emission.     

Time-resolved simultaneous polarized and depolarized light scattering system with high sensitivity to optical anisotropy: application to phase separation of an optically isotropic liquid mixture

Depolarized light scattering is widely used to probe the spatial correlation of optical anisotropy in crystals, liquid crystals, and viscoelastic materials under stress, and a powerful means to study a non-equilibrium pattern evolution process of such a system. To follow the temporal change in the diagonal and off-diagonal contributions of the dielectric tensor, it is highly desirable to measure two-dimensional (2D) polarized (HH: horizontally transmitted, horizontally received) and depolarized (VH: vertically transmitted, horizontally received) scattering patterns simultaneously in a time-resolved manner. We develop a light scattering system with a video-rate time resolution as well as very high sensitivity to optical anisotropy. To detect extremely weak VH scattering from a sample without suffering from residual birefringence of the optical system itself and leakage of strong HH scattering signals, we use an objective lens specially designed for polarizing microscopy and Glan-laser prisms, respectively. This system enables us to experimentally elucidate the origin of VH scattering: we use the ratio of the VH and HH scattering intensity as a fingerprint for whether a 2D VH scattering pattern is caused by (i) optical anisotropy (intrinsic birefringence) or merely by (ii) spatial inhomogeneity of optically isotropic materials. We verify the validity of this method for a process of phase separation in a binary mixture of isotropic liquids. The simultaneous HH and VH measurement allows us to directly estimate the ratio of VH and HH scattering intensity accurately. The careful comparison of this ratio with a simple theory unambiguously demonstrates that the 2D VH scattering pattern is caused by the scattering angle dependence of the diffraction efficiency of light with the two polarization directions. That is, the origin of VH scattering is due to geometrical effects of the inhomogeneous distribution of the refractive index and not due to optical birefringence, as it should be for the optically isotropic sample. This method using the ratio of VH and HH scattering intensity may be widely used for distinguishing the two types of origins for a VH scattering pattern in an unambiguous manner.     

POLARIZED SITE-SELECTION SPECTROSCOPY OF CHLOROPHYLL a IN DETERGENT

Monomeric chlorophyll a (Chl a ) was obtained from the isolated core antenna complex CP47 of photo-system II after incubation with the detergent triton X-100 and was studied by low-temperature polarized light spectroscopy with the aim to obtain model spectra for Chi a in intact photosynthetic complexes. Evidence is presented by circular dichroism and anisotropy measurements that the isolated chlorophyll is monomeric. The absorption bandwidths are relatively large compared to those found in photosynthetic complexes due to inhomogeneous broadening introduced by the detergent. By selective laser excitation at low temperature, considerable narrowing can be achieved. A number of vibrational bands are resolved in the site-selected, polarized absorption and fluorescence emission spectra. The emission spectrum of Chi a in detergent-damaged CP47 is compared with that of Chi a in the intact light-harvesting complex of photosystem II (LHC-II) from green plants. The spectra are remarkably similar indicating that the low-temperature thermal emitter in LHC-II has spectral properties that are very similar to those of monomeric Chl a .     

SPECTROSCOPIC AND ORIENTATIONAL PROPERTIES OF CHLOROPHYLL a AND CHLOROPHYLL b IN LIPID MEMBRANES

Abstract
Linear dichroism and fluorescence depolarization measurements on chlorophyll a and chlorophyll b molecules incorporated into macroscopically oriented multibilayers of the plant lipid digalactosyldiacylglycerol (DGDG) are presented. The results are combined with measurements of fluorescence anisotropy to obtain both the order parameters describing the orientational statistics and the directions of the absorption and emission transition moments in the frame of the molecules. The problem presented by the overlapping nature of the absorption and emission bands is overcome by determining the fluorescence depolarization at the two maxima of the emission spectrum.     

Anisotrophy of rotational diffusion of excited molecules in solution

The principal values of the rotational diffusion tensor of perylene and 9,10-dimethylanthracene in ethanol are evaluated from temperature-dependence measurements of the degree of fluorescence polarization upon exciting the molecules into two perpendicularly polarized transitions.     

Compartmental modeling of the fluorescence anisotropy decay of a cylindrically symmetric brownian rotor: Identifiability analysis.

We present the results of the deterministic identifiability analysis based on similarity transformation for models of one-state excited-state events of cylindrically symmetric rotors in isotropic environments undergoing rotational diffusion described by Brownian reorientation. Such an analysis on error-free time-resolved fluorescence (anisotropy) data can reveal whether the parameters of the considered model can be determined. The fluorescence delta-response functions I(parallel)(t) and I(perpendicular)(t), for fluorescence polarized respectively parallel and perpendicular to the electric vector of linearly polarized excitation, are used to construct, in convenient matrix form, expressions of the sum S(t) = I(parallel)(t) + 2I(perpendicular)(t), the difference D(t) = I(parallel)(t) - I(perpendicular)(t), and the time-resolved fluorescence anisotropy r(t) = D(t)/S(t). The identifiability analysis of r(t) demonstrates that the rotational diffusion coefficients D(parallel) and D(perpendicular) for rotation respectively about and perpendicular to the symmetry axis can be uniquely resolved. However, the polar and azimuthal angles defining the absorption and emission transition moments in the molecular reference frame are not individually identifiable. Nevertheless, the difference between the polar angles of these transition moments is uniquely determined.     

Dynamics of macromolecular chains. IV. Quenching and fluorescence polarization studies of polystyrene in solution

Combined measurements of quenching and fluorescence polarization corroborate the results previously obtained by the polarized fluorescence anisotropy decay technique and, more especially, confirm the form of the proposed orientation autocorrelation function. The use of this method to determine the mean relaxation time of the relaxation time distribution is also explained.     

Tuning the Nature of the Fluorescent State: A Substituted Polycondensed Dye as a Case Study

An extensive spectroscopic analysis is presented of an elongated polycondensed dye with a donor–acceptor substitution. The charge‐transfer (CT) state, polarized along the long molecular axis, is close in energy to a local excitation (LE) of the polycondensed system, roughly polarized along the short molecular axis, which makes this system particularly suitable to investigate the subtle LE/CT interplay. An essential‐state model is presented that quantitatively reproduces absorption and fluorescence spectra, as well as fluorescence emission and excitation anisotropy spectra collected in solvents of different polarity and viscosity, which sets a sound basis for the understanding of how solvent polarity and solvent relaxation affect the nature of low‐lying excitations. The markedly different fluorescence emission and excitation anisotropy spectra measured in glassy and liquid polar solvents unambiguously demonstrate the major role played by solvent relaxation in the definition of fluorescence properties of the dye.     

New insight in the template decomposition process of large zeolite ZSM-5 crystals: an in situ UV-Vis/fluorescence micro-spectroscopy study

A combination of in situ UV-Vis and confocal fluorescence micro-spectroscopy was used to study the template decomposition process in large zeolite ZSM-5 crystals. Correlation of polarized light dependent UV-Vis absorption spectra with confocal fluorescence emission spectra in the 400-750 nm region allowed extracting localized information on the nature and amount of chemical species formed upon detemplation at the single particle level. It has been found by means of polarized light dependent UV-Vis absorption measurements that the progressive growth of molecules follows the orientation of the straight channels of ZSM-5 crystals. Oligomerizing template derivatives lead to the subsequent build-up of methyl-substituted benzenium cations and more extended coke-like species, which are thermally stable up to ～740 K. Complementary confocal fluorescence emission spectra showed nearly equal distribution of these molecules within the entire volume of the thermally treated zeolite crystals. The strongest emission bands were appearing in the orange/red part of the visible spectrum, confirming the presence of large polyaromatic molecules.     

LIGHT QUENCHING OF FLUORESCENCE: A NEW METHOD TO CONTROL THE EXCITED STATE LIFETIME AND ORIENTATION OF FLUOROPHORES

Abstract Experimental studies have recently demonstrated that fluorescence emission can be quenched by laser light pulses from modem high-repetition rate lasers, a phenomenon we call “light quenching.” In this overview article, we describe the possible effects of light quenching on the steady-state and time-resolved intensity and anisotropy of fluorophores. One can imagine two classes of experiments. Light quenching can occur within the single excitation pulse, or light quenching can be accomplished with a second time-delayed quenching pulse. The extent of light quenching depends on the amplitude of the emission spectrum at the quenching wavelength. Different effects are expected for light quenching by a single laser beam (within a single laser pulse) or for a time-delayed quenching pulse. Depending upon the polarization of the light quenching beam, light quenching can decrease or increase the anisotropy. Remarkably, the light quenching can break the usual z-axis symmetry of the excited state population, and the measured anisotropy (or polarization) depends upon whether the observation axis is parallel or perpendicular to the propagation direction of the light quenching beam. The polarization can increase to unity under selected conditions. Quenching with time-delayed light pulses can result in step changes in the intensity or anisotropy, which is predicted to result in oscillations in the frequency-domain intensity and anisotropy decays. These predicted effects of light quenching, including oscillations in the frequency-domain data, were demonstrated to occur using selected fluorophores. The increasing availability and use of pulsed laser sources requires consideration of the possible effects of light quenching and offers the opportunity for a new class of two-pulse or multiple-pulse time-resolved experiments where the sample is prepared by the excitation pulse and subsequent quenching pulses to modify the excited state population, followed by time- or frequency-domain measurement of the optically prepared excited fluorophores.     

Enhancement of adsorbed dye monolayer fluorescence by a silver nanoparticle overlayer

Deposition of silver nanoparticles directly onto a Rhodamine Red monolayer covalently bound to glass is found to increase the photoluminescence by as much as 20 times depending on excitation wavelength and nanoparticle density. At the same time, the excited state lifetime is reduced by more than a factor of 2, the fluorescence spectrum is blue-shifted, and greater polarization anisotropy in the emission is observed. We attribute these effects to local enhancement of the optical fields near the molecules by interactions with silver plasmons. We approximately separate the relative contributions of increased absorption and increased emissive rate to the observed enhancement of fluorescence. A study of the spatial inhomogeneity of the effect using scanning confocal microscopy demonstrates that average enhancements at least twice as large are possible.     

Orientational dynamics of water confined on a nanometer length scale in reverse micelles

The time-resolved orientational anisotropies of the OD hydroxyl stretch of dilute HOD in H(2)O confined on a nanometer length scale in sodium bis(2-ethylhexyl) sulfosuccinate (AOT) reverse micelles are studied using ultrafast infrared polarization and spectrally resolved pump-probe spectroscopy, and the results are compared to the same experiments on bulk water. The orientational anisotropy data for three water nanopool sizes (4.0, 2.4, and 1.7 nm) can be fitted well with biexponential decays. The biexponential decays are analyzed using a wobbling-in-a-cone model that involves fast orientational diffusion within a cone followed by slower, full orientational relaxation. The data provide the cone angles, the diffusion constants for motion within the cones, and the final diffusion constants as a function of the nanopool size. The two processes can be interpreted as a local angular fluctuation of the OD and a global hydrogen bond network rearrangement process. The trend in the relative amplitudes of the long and short exponential decays suggest an increasing rigidity as the nanopool size decreases. The trend in the long decay constants indicates a longer hydrogen bond network rearrangement time with decreasing reverse micelle size. The anisotropy measurements for the reverse micelles studied extrapolate to approximately 0.33 rather than the ideal value of 0.4, suggesting the presence of an initial inertial component in the anisotropy decay that is too fast to resolve. The very fast decay component is consistent with initial inertial orientational motion that is seen in published molecular-dynamics simulations of water in AOT reverse micelles. The angle over which the inertial orientational motion occurs is determined. The results are in semiquantitative agreement with the molecular-dynamics simulations.     

Noninvasive optical characterization of hydrogels

This paper presents results based on concentration quenching of fluorescence polarization (cqfp), which demonstrate the feasibility of using cqfp to measure changes in hydrogel-membrane hydration. This is accomplished by binding fluorescent molecules to the hydrogel matrix, and showing that the fluorescence polarization is a monotonic function of fluorophore concentration. Films based on crosslinked 2-hydroxyethyl methacrylate containing lissamine side groups (10⁻⁴-10⁻⁷ mol/l) were mounted in a special cell which provided an aqueous environment, and in which polarized fluorescence could be measured. An argon-ion laser provided polarized excitation at 488nm, and the polarized fluorescent emission was detected. The correlation between the fluorescence polarization and the bound dye concentration was found to correspond to the theoretically expected behavior.     

Linearly polarized emission of an organic semiconductor nanobelt

Linearly polarized emission has been observed for the nanobelts fabricated from a perylene diimide molecule through both solution-based and surface-supported self-assembling. The measurement of polarized emission was performed over single nanobelts with use of a near-field scanning optical microscope (NSOM) adapted with emission polarization (by putting a planar polarizer before the detector). Rotating the emission polarizer (from 0 degrees to 180 degrees) changed the emission intensity in a way depending on the relative angle between the long axis of the belt and the polarizer with a minimum of intensity detected at ca. 78 degrees, which is indicative of the tilted stacking of molecules along the belt direction.