Density functional theory calculations and experimental parameters for mutarotation of 6-deoxy-l-mannopyranosyl hydrazine

The geometry and energy profiles of the mutarotation pathway present in the equilibrium of 6-deoxy-β-l-mannopyranosyl 2,4-dinitrophenylhydrazine (1a), 6-deoxy-l-mannose 2,4-dinitrophenylhydrazone (1b), and 6-deoxy-α-l-mannopyranosyl 2,4-dinitrophenylhydrazine (1c) were modeled by DFT calculations at B3LYP/6-31G(d) level affording ΔG_DFT=0.000 kcal/mol, ΔG_DFT=0.174 kcal/mol, and ΔG_DFT=3.411 kcal/mol, respectively. Experimentally, the β-l-pyranose 1a occurs in 50% followed by the acyclic structure 1b in 44% as well as by the α-l-anomer 1c in 6%. The conformations of 1a-c and their corresponding 2,3,4-triacetyl derivatives 2a-c were studied by molecular modeling and NMR spectroscopy. IR frequencies, NMR chemical shifts, and X-ray diffraction analysis were employed to compare theoretical with experimental structural parameters.     

Chelating Phosphorus–An O,C, O-Coordinating Pincer-Type Ligand Coordinating PIII and PV Centres

The sequence of reactions of the phosphorus-containing aryllithium compound 5-t-Bu-1,3-[(P(O)(O-i-Pr)₂]₂C₆H₂Li (ArLi) with Ph₂PCl, KMnO₄, elemental sulfur and elemental selenium, respectively, gave the aryldiphenylphosphane chalcogenides 5-t-Bu-1,3-[(P(O)(O-i-Pr)₂]₂C₆H₂P(E)Ph₂ ( 1 , E=O; 2 , E=S; 3 , E=Se). Compound 1 partially hydrolysed giving [5-t-Bu-1-{(P(O)(O-i-Pr)₂}-3-{(P(O)(OH)₂}C₆H₂]P(O)Ph₂ ( 4 ). The reaction of ArLi with PhPCl₂ provided the benzoxaphosphaphosphole [1(P), 3(P)-P(O)(O-i-Pr)OPPh-6-t-Bu-4-P(O)(O-i-Pr)₂]C₆H₂P ( 5i ) as a mixture of the two diastereomers. The oxidation of 5i with elemental sulfur gave the benzoxaphosphaphosphole sulfide [1(P), 3(P)-P(O)(O-i-Pr)OP(S)Ph-6-t-Bu-4-P(O)(O-i-Pr)₂]C₆H₂ ( 5 ) as pair of enantiomers P1(R), P3(S)/P1(S), P3(R) of the diastereomer (RS/SR)- 5 ( 5b ). The aryldiphenylphosphane 5-t-Bu-1,3-[(P(O)(O-i-Pr)₂]₂C₆H₂PPh₂ ( 6 ) was obtained from the reaction of the corresponding aryldiphenylphosphane sulfide 2 with either sodium hydride, NaH, or disodium iron tetracarbonyl, Na₂Fe(CO)₄. The oxidation of the aryldiphenylphosphane 6 with elemental iodine and subsequent hydrolysis yielded the aryldiphenyldioxaphosphorane 9-t-Bu-2,6-(OH)-4,4-Ph₂-3,5-O₂-2,6-P₂-4λ⁵-P-[5.3.1.0]-undeca-1(10),7(11),8-triene ( 7 ). Both of its diastereomers, (RR/SS)- 7 ( 7a ) and (RS/SR)- 7 ( 7b ), were separated as their chloroform and i-propanol solvates, 7a ⋅2CHCl₃ and 7b ⋅i-PrOH, respectively. DFT calculations accompanied the experimental work.     

Structure and tautomerism of 4-bromo substituted 1H-pyrazoles

The tautomerism in the solid state and in solution of five 4-bromo-1H-pyrazoles has been studied by multinuclear magnetic resonance spectroscopy and, for one of them, by X-ray crystallography (3,4-dibromo-5-phenyl-1H-pyrazole). When there is a bromine atom at position 3(5), in all cases, the tautomer present in the solid state is the 3-bromo one. In solution, the same tautomer is the major one. DFT calculations justify the predominance of 3-bromo tautomers over 5-bromo ones and provide some useful chemical shifts obtained through GIAO calculations.     

重金属Cd2+对细胞外向K+通道的影响

重金属镉(Cd)污染及其对动植物的伤害机理,已成为中外相关专家研究的热点,但是细胞毒害机理依然不清楚.分布于细胞膜上的通道蛋白,不仅是外来物质作用于生物体的首要位点,且会影响离子通道的功能.为阐释镉(Cd)污染致病与毒害的细胞学机理,选择具有重要生理功能的细胞钾离子(K+)通道为示踪,并应用全细胞膜片钳技术,研究了Cd...     

Molecular Cage Assembly by Sn−O−Sn Bridging of Di-, Tri- and Tetranuclear Organotin Tectons: Extending the Spacing in Double Ladder Structures

Hydrolysis reactions of di- and trinuclear organotin halides yielded large novel cage compounds containing Sn−O−Sn bridges. The molecular structures of two octanuclear tetraorganodistannoxanes showing double-ladder motifs, viz., [{Me₃SiCH₂(Cl)SnCH₂YCH₂Sn(OH)CH₂SiMe₃}₂(μ-O)₂]₂ [ 1 , Y=p-(Me)₂SiC₆H₄-C₆H₄Si(Me)₂] and [{Me₃SiCH₂(I)SnCH₂YCH₂Sn(OH)CH₂SiMe₃}₂(μ-O)₂]₂ ⋅ 0.48 I₂ [ 2⋅ 0.48 I₂, Y=p-(Me)₂SiC₆H₄-C₆H₄Si(Me)₂], and the hexanuclear cage-compound 1,3,6-C₆H₃(p-C₆H₄Si(Me)₂CH₂Sn(R)₂OSn(R)₂CH₂Si(Me)₂C₆H₄-p)₃C₆H₃-1,3,6 ( 3 , R=CH₂SiMe₃) are reported. Of these, the co-crystal 2⋅ 0.48 I₂ exhibits the largest spacing of 16.7 Å reported to date for distannoxane-based double ladders. DFT calculations for the hexanuclear cage and a related octanuclear congener accompany the experimental work.     

Oxazolidinone cross-alkylation during Evans’ asymmetric alkylation reaction

Starting from Evans’ imidazolidin-2-one (1) two compounds were obtained by trans-N-acylation: the expected one 3 with S,R configuration and a second compound 5, that is, related to 3 by the loss of a CH(CH₃)CO fragment. The stereochemistry of 3 was established by NMR spectroscopy, mainly NOE experiments, as expected, the new center has an S configuration, the compound being thus S,R. The structure of compound 5 was determined by X-ray crystallography. A mechanism of formation of 5 was proposed.     

NMR spectra of salicylohydroxamic acid in DMSO-d6 solution: a DFT study

The ¹H, ¹³C and ¹H, ¹³C COSY NMR spectra of salicylohydroxamic acid (sha) were measured in DMSO-d₆ solution. The B3LYP GIAO method with the 6-311++G(d,p) basis set was chosen to reproduce the experimental spectra. All possible zusammen and entgegen conformers of monomeric sha were computed. After geometry optimisation (B3LYP/6-311++G(d,p)) only nine independent models of the molecule were shown to be stable. Additionally, the NMR chemical shifts of the Onsager model of the most stable monomer were calculated. The computed chemical shifts for the labile protons for all aforementioned geometries meaningfully underestimated experimental results suggesting the existence of the H-bonded structure of sha in DMSO solution. The most probable two dimeric structures along with two solvent-bounded aggregates were subsequently calculated at the same level of theory. The best agreement was obtained for sha H-bonded with two DMSO molecules (confirmed by the absence of concentration effect). The relative error not exceeding 10 and 4% for chemical shifts in ¹H and ¹³C NMR spectra of sha–(DMSO)₂, respectively, showed that the applied method with the B3LYP/6-311++G(d,p) basis set was efficient to predict the NMR shifts of a compound with strong H-bonds. Thus, this allows to assign properly NMR resonances to specific structure formed in DMSO solution.     

Synthesis,characterization and DFT calculations of a Re(V)-thiazolidine-2,4-dione complex

This article presents a combined experimental and computational study of a new oxorhenium(V) complex of thiazolidine-2,4-dione (HTDO). The complex has been synthesized by direct reaction of NH₄ReO₄ with thiazolidine-2,4-dione in the presence of Na₂S₂O₆ as a reducing agent. The complex [ReO(TDO)(H₂O)₃](S₂O₈) has been characterized by spectroscopy (FT-IR, NMR, UV-vis, mass), thermogravimetry, microanalysis, and HPL chromatography. The complex was geometrically optimized by DFT with B3LYP level of theory and satisfactory theoretical–experimental agreement was achieved for analysis of IR and NMR data of the complex. Additional information about binding between rhenium and oxo ligand in the complex has been obtained by NBO analysis. The antibacterial activity of the investigated complex has been tested and evaluated.     

Solid-state structural properties of 2,4,6-trimethoxybenzene derivatives, determined directly from powder X-ray diffraction data in conjunction with other techniques

Structural properties of 2,4,6-trimethoxybenzaldehyde, 2,4,6-trimethoxybenzyl alcohol and 2,4,6-trimethoxyacetophenone have been determined directly from powder X-ray diffraction data, using the direct-space Genetic Algorithm (GA) technique for structure solution followed by Rietveld refinement. Structural similarities and contrasts within this family of materials are elucidated. The work illustrates the value of utilizing information from other sources, including spectroscopic data and computational techniques, as a means of augmenting the structural knowledge established from the powder X-ray diffraction data.     

The B–N Bond in Some Aminoboranes and an Iminoborane,Studied by 11B and 15N NMR Spectroscopy and DFT Methods

¹⁵N NMR spectra of several aminoboranes (Me₂B–NMe₂, Cl₂B–NMe₂, Br₂B–NMe₂, OCH₂CH₂OB–NMe₂), three N‐pyrrolylboranes, and an iminoborane (tBu–B≡N–tBu) was measured. The spin‐spin coupling constants ¹J(¹⁵N, ¹¹B) were resolved at elevated temperatures. In the case of the iminoborane at 105 °C, the coupling constant ¹J(¹⁴N,¹¹B) = 57 Hz could also be determined from the ¹¹B NMR spectrum [from ¹⁵N NMR ¹J(¹⁵N,¹¹B) = 81 Hz]. Generally, there is no correlation between the magnitude of ¹J(¹⁵N,¹¹B) and the bond length d_BN. The values ¹J(¹⁵N,¹¹B) indicate that changes in σ bonding affect their magnitude, and the nature of the lone pair of electrons at nitrogen is of great importance. The calculated NMR parameters of an adduct of the iminoborane with an N‐heterocyclic carbene, show that the bonding situation around the BN double bond in the adduct is comparable with imines.     

Synthesis,spectral and structural investigations,theoretical studies,and antibacterial activity of 4-(2-hydroxynaphthalen-3-ylamino)pent-3-en-2-one and its diphenyltin(IV) complex

The Schiff base, 4-(2-hydroxynaphthalen-3-ylamino)pent-3-en-2-one (H₂L) and its diphenyltin complex have been synthesized and characterized by elemental analysis and FT-IR, ¹H, or ¹¹⁹Sn NMR spectroscopy. The structures of free ligand and complex have been confirmed by single-crystal X-ray diffraction. In the structure of H₂L, enolic proton is transferred to imine nitrogen and there is an intramolecular hydrogen bond between amine and carbonyl group. There are also 1-D intermolecular hydrogen-bonded chains with π–π stacking between chains. SnPh₂L is crystallized in the Pca2(1) orthorhombic space group with four molecules in an asymmetric unit cell. The geometry around tin is a highly distorted trigonal bipyramid with Schiff base completely deprotonated and coordinated tridentate to tin via phenolic and enolic oxygen atoms in axial and imine nitrogen in equatorial positions. The results of X-ray diffraction were also compared with density functional theory calculations. These calculations also confirm the keto-amine tautomeric form for Schiff base in solid phase. The in vitro antibacterial activities of ligand and complex have been evaluated against Gram-positive (Bacillus cereus and Staphylococcus aureus) and Gram-negative (Escherichia coli and Pseudomonas aeruginosa) bacteria. H₂L showed no activity but the diphenyltin(IV) complex exhibited good activities along with the standard antibacterial drugs.     

N‐Trimethylsilyl‐aminophosphines: Solution‐state Structures,Studied by Multinuclear Magnetic Resonance and DFT Methods

A novel fairly stable N‐trimethylsilylamino(dichloro)phosphine was prepared, in which the nitrogen atom bears a 9‐borabicyclo[3.3.1]nonyl group. The gas phase structures of various amino‐ and silylaminophosphines including a phosphenium cation and an amino(imono)phosphine were optimized at the B3LYP/6‐311+G(d,p) level of theory, and NMR parameters were calculated. Both magnitude and sign of the two‐bond coupling constants ²J(³¹P,N,¹³C) and ²J(³¹P,N,²⁹Si), known to be sensitive towards the respective conformation, are well reproduced by the calculations. This also holds for ¹J(³¹P,¹⁵N), although calculated values ¹K(³¹P,¹⁵N) (all < 0) are slightly more negative [¹J(³¹P,¹⁵N) more positive] than experimental values.     

Linear Relationship between 13C NMR Chemical Shifts and the Bending of sp-Carbon Chains

Polyynes show a strictly linear relationship between the energy impact and the bending of the polyyne chain. The energy, which is necessary to bend the acetylenic chain, decreases with the increasing number of acetylene units. A deviation from linearity in polyynes can be realized in solution by violation of the mutual-exclusion principle between IR and Raman spectra. However, there is still no possibility to measure the extent of the nonlinearity in solution. Herein, we show that the ¹³C NMR spectroscopy represents an appropriate tool for this as we found an almost perfect linear relationship between the bending of the alkyne chain and the change of the chemical shift of the outer acetylenic carbon atoms. By using molecular bows in which the alkyne chain can be bent by switching the azobenzene unit, this correlation can be proved experimentally. In the future, this correlation should enable the determination of the extent of the bending and the strain energy in polyynes. Consequently, polyynes could be employed as probes for measuring further molecular forces.     

Synthesis, IR-, NMR-, DFT and X-ray study of ferrocenyl heterocycles from thiosemicarbazones. Part 21: Study on ferrocenes

Cyclization reactions of the thiosemicarbazones of formyl- and acetylferrocene and their S-methyl derivatives with DMAD afforded novel ferrocenyl-hydrazono-substituted thiazolones, one-one dimethylthiazole-4,5-dicarboxylate and 1,3-thiazin-4-one, N-ferrocenylimino-pyrimidones/imidazolones, one intermediate β-adduct and via oxidative cyclization, a ferrocenyl-1,2,4-triazole. Ring isomerization of 1,3-thiazin-4-ones to a 1,3-thiazolones was detected. The structure of the new compounds was established by IR and NMR spectroscopy, including HMQC, HMBC and DEPT measurements and supported with GIAO NMR calculations and controlled also synthetically by phase-transfer methylation. For three compounds the stereostructure was also proved by X-ray diffraction.