Group 12 Carbonates and their Binary Complexes with Nitrogen Bases and FH2Z Molecules (Z=P,As, Sb): Synergism in Forming Ternary Complexes

MCO₃ (M=Zn, Cd, Hg) forms a spodium bond with nitrogen-containing bases (HCN, NHCH₂, NH₃) and a pnicogen bond with FH₂Z (Z=P, As, Sb). The spodium bond is very strong with the interaction energy ranging from −31 kcal/mol to −56 kcal/mol. Both NHCH₂ and NH₃ have an equal electrostatic potential on the N atom, but the corresponding interaction energy is differentiated by 1.5–4 kcal/mol due to the existence of spodium and hydrogen bonds in the complex with NHCH₂ as the electron donor. The spodium bond is weakest in the HCN complex, which is not consistent with the change of the binding distance. The spodium bond becomes stronger in the CdCO₃<ZnCO₃<HgCO₃ sequence although the positive electrostatic potential on the Hg atom is smallest. This is because the electrostatic interaction is dominant in the spodium-bonded complexes of CdCO₃ and ZnCO₃ but the polarization interaction in that of HgCO₃. The pnicogen bond is much weaker than the spodium bond and the former has a larger enhancement than the latter in the FH₂Z⋅⋅⋅OCO₂M⋅⋅⋅N-base ternary complexes.     

Tetrel Bonds between Phenyltrifluorosilane and Dimethyl Sulfoxide: Influence of Basis Sets,Substitution and Competition

Ab initio calculations have been performed for the complexes of DMSO and phenyltrifluorosilane (PTS) and its derivatives with a substituent of NH₃, OCH₃, CH₃, OH, F, CHO, CN, NO₂, and SO₃H. It is necessary to use sufficiently flexible basis sets, such as aug’-cc-pVTZ, to get reliable results for the Si···O tetrel bonds. The tetrel bond in these complexes has been characterized in views of geometries, interaction energies, orbital interactions and topological parameters. The electron-donating group in PTS weakens this interaction and the electron-withdrawing group prominently strengthens it to the point where it exceeds that of the majority of hydrogen bonds. The largest interaction energy occurs in the p-HO₃S-PhSiF₃···DMSO complex, amounting to −122 kJ/mol. The strong Si···O tetrel bond depends to a large extent on the charge transfer from the O lone pair into the empty p orbital of Si, although it has a dominant electrostatic character. For the PTS derivatives of NH₂, OH, CHO and NO₂, the hydrogen bonded complex is favorable to the tetrel bonded complex for the NH₂ and OH derivatives, while the σ-hole interaction prefers the π-hole interaction for the CHO and NO₂ derivatives.     

Ternary Complexes Stabilized by Chalcogen and Alkaline-Earth Bonds: Crucial Role of Cooperativity and Secondary Noncovalent Interactions

High-level G4 calculations show that the strength of chalcogen interactions is enhanced dramatically if chalcogen compounds simultaneously form alkaline-earth bonds. This phenomenon is studied by exploring binary YX₂⋅⋅⋅N-Base complexes and two types of ternary MCl₂⋅⋅⋅YX₂⋅⋅⋅N-Base, YX₂⋅⋅⋅N-Base⋅⋅⋅MCl₂ complexes, in which YX₂ is a chalcogen compound (Y=S, Se; X=F, Cl), the N-Bases are sp, sp², and sp³ bases (NCH, HN=CH₂, NH₃), and MCl₂ are alkaline-earth BeCl₂ or MgCl₂ derivatives. Starting from the chalcogen-bonded complexes YX₂⋅⋅⋅NH₃ and YX₂⋅⋅⋅HN=CH₂, the binding site of a new incoming alkaline-earth bond is found, surprisingly, to depend on the nature of the halogen atom attached to the chalcogen. For the YF₂ binary complexes the association site is the F atom of the YF₂ subunit, whereas for YCl₂ it is the N atom of the nitrogen base. Regarding YX₂⋅⋅⋅NCH complexes, N is the most favorable site for an alkaline-earth interaction in ternary complexes, regardless of which YX₂ derivative is used. The explanation relies on the interplay of all the noncovalent interactions involved: the strong cooperativity between chalcogen and alkaline-earth bonds, and the appearance of secondary noncovalent interactions in the form of hydrogen bonds.     

Mndo study of fragmentations in mass spectrometry. Part II. Substituent effects in the ioinization of [CH3?CO?R] compounds and their enol tautomers

A semiempirical MNDO method was used in calculations on monosubstituted neutral and cationic compounds of the [CH₃? CO? R] type with a wide range of substituents (R = H, F, Cl, CH₃, NH₂, OH, OCH₃, NHCH₃, CH?CH₂). The results obtained are interpreted with respect to the effect of the individual substituents on the geometry and electron distribution in the systems studied and allow the conclusion that the ratios of partial charges in the individual substructures in a radical cation correspond to those of the respective peak intensities in the mass spectrum.     

A Quantitative Molecular Orbital Perspective of the Chalcogen Bond

We have quantum chemically analyzed the structure and stability of archetypal chalcogen-bonded model complexes D₂Ch⋅⋅⋅A⁻ (Ch = O, S, Se, Te; D, A = F, Cl, Br) using relativistic density functional theory at ZORA-M06/QZ4P. Our purpose is twofold: (i) to compute accurate trends in chalcogen-bond strength based on a set of consistent data; and (ii) to rationalize these trends in terms of detailed analyses of the bonding mechanism based on quantitative Kohn-Sham molecular orbital (KS-MO) theory in combination with a canonical energy decomposition analysis (EDA). At odds with the commonly accepted view of chalcogen bonding as a predominantly electrostatic phenomenon, we find that chalcogen bonds, just as hydrogen and halogen bonds, have a significant covalent character stemming from strong HOMO−LUMO interactions. Besides providing significantly to the bond strength, these orbital interactions are also manifested by the structural distortions they induce as well as the associated charge transfer from A⁻ to D₂Ch.     

Cooperativity between the Halogen Bond and the Hydrogen Bond in H3N⋅⋅⋅XY⋅⋅⋅HF Complexes (X,Y=F,Cl, Br)

Ab initio calculations are used to provide information on H₃N???XY???HF triads (X, Y=F, Cl, Br) each having a halogen bond and a hydrogen bond. The investigated triads include H₃N???Br₂‐HF, H₃N???Cl₂???HF, H₃N???BrCI???HF, H₃N???BrF???HF, and H₃N???ClF???HF. To understand the properties of the systems better, the corresponding dyads are also investigated. Molecular geometries, binding energies, and infrared spectra of monomers, dyads, and triads are studied at the MP2 level of theory with the 6‐311++G(d,p) basis set. Because the primary aim of this study is to examine cooperative effects, particular attention is given to parameters such as cooperative energies, many‐body interaction energies, and cooperativity factors. The cooperative energy ranges from ?1.45 to ?4.64 kcal mol^?1, the three‐body interaction energy from ?2.17 to ?6.71 kcal mol^?1, and the cooperativity factor from 1.27 to 4.35. These results indicate significant cooperativity between the halogen and hydrogen bonds in these complexes. This cooperativity is much greater than that between hydrogen bonds. The effect of a halogen bond on a hydrogen bond is more pronounced than that of a hydrogen bond on a halogen bond.     

Facile generation of platinum(IV) compounds with mixed labile moieties. Hydrogen peroxide oxidation of platinum(II) to platinum(IV) compounds

Hydrogen peroxide oxidation of platinum(II) compounds containing labile groups such as Cl, OH, and alkene moieties has been carried out and the products characterized. The reactions of [Pt^II (X)₂ (N–N)] (X = Cl, OH, X₂ = isopropylidenemalorate (ipm); N–N 2,2-dimethyl-1,3-propanediamine [(dmpda), N-isopropyl-1,3-propanediamine (ippda)] with hydrogen peroxide in an appropriate solvent at room temperature affords [Pt^IV (OH)(Y)(X)₂(N–N)] (Y = OH, OCH₃). The crystal structures of [Pt^IV(OH)(OCH₃)(Cl)₂(dmpda)]·2H₂O (P-1 bar, a = 6.339(2) Å , b = 9.861(1) Å, c = 11.561(1) Å, a = 92.078(9)°, β = 104.78(1)°, γ=100.54(1)°, V = 684.3(2) ų, Z = 2R = 0.0503) and [Pt^IV(OH)₂(ipm)(ippda)]·3H₂O (C 2/c, a = 27.275(6) Å, b=6.954(2) Å, c = 22.331(4) Å, β = 118.30(2)°, V = 3729(2) ų, Z = 8, R = 0.0345) have been solved and refined. The local geometry around the platinum(IV) atom approximates to a typical octahedral arrangement with two added groups (OH and OCH₃; OH and OH) in a transposition. The platinum(IV) compounds with potential labile moieties may be important intermediate species for further reactions.     

Quantum Chemical Calculation of Conformations and Rotation Barriers of Functional Groups in Arylsulfonyl Halides

The semiempirical PM3 method is used to calculate the potential functions of internal rotation of the functional groups –SO₂Cl, –NO₂, –CH₃, –OCH₃, and –NH₂ of benzenesulfonyl halide molecules (PhSO₂Hal, Hal = F, Cl, Br, I) and twelve substituted derivatives of benzenesulfonyl chloride. Molecular conformations have been determined and internal rotation barriers of the functional groups have been calculated. For meta- and para-substituted benzenesulfonyl chlorides, the projection of the S–Hal bond is perpendicular to the plane of the benzene ring. The rotation barriers of the –SO₂Hal group of benzenesulfonyl halides increase in the series Hal = F, Cl, Br, I. The rotation barriers of the –SO₂Cl group of benzenesulfonyl chloride with meta- and para-substituents slightly increase with the electron-donor properties of the substituent. The rotation barriers of the functional groups of ortho-substituted benzenesulfonyl chlorides are 3 or 4 times as high as those of the meta- and para-isomers. For para-substituted benzenesulfonyl chlorides, the rotation barriers of the functional groups increase in the order –CH₃, –NO₂, –SO₂Cl, –OCH₃, –NH₂.     

Perturbating Intramolecular Hydrogen Bonds through Substituent Effects or Non-Covalent Interactions

An analysis of the effects induced by F, Cl, and Br-substituents at the α-position of both, the hydroxyl or the amino group for a series of amino-alcohols, HOCH₂(CH₂)_nCH₂NH₂ (n = 0–5) on the strength and characteristics of their OH···N or NH···O intramolecular hydrogen bonds (IMHBs) was carried out through the use of high-level G4 ab initio calculations. For the parent unsubstituted amino-alcohols, it is found that the strength of the OH···N IMHB goes through a maximum for n = 2, as revealed by the use of appropriate isodesmic reactions, natural bond orbital (NBO) analysis and atoms in molecules (AIM), and non-covalent interaction (NCI) procedures. The corresponding infrared (IR) spectra also reflect the same trends. When the α-position to the hydroxyl group is substituted by halogen atoms, the OH···N IMHB significantly reinforces following the trend H < F < Cl < Br. Conversely, when the substitution takes place at the α-position with respect to the amino group, the result is a weakening of the OH···N IMHB. A totally different scenario is found when the amino-alcohols HOCH₂(CH₂)_nCH₂NH₂ (n = 0–3) interact with BeF₂. Although the presence of the beryllium derivative dramatically increases the strength of the IMHBs, the possibility for the beryllium atom to interact simultaneously with the O and the N atoms of the amino-alcohol leads to the global minimum of the potential energy surface, with the result that the IMHBs are replaced by two beryllium bonds.     

Influence of Substituents in the Benzene Ring on the Halogen Bond of Iodobenzene with Ammonia

The effects on the C−I⋅⋅N halogen bond between iodobenzene and NH₃ of placing various substituents on the phenyl ring are monitored by quantum calculations. Substituents R=N(CH₃)₂, NH₂, CH₃, OCH₃, COCH₃, Cl, F, COH, CN, and NO₂ were each placed ortho, meta, and para to the I. The depth of the σ-hole on I is deepened as R becomes more electron-withdrawing which is reflected in a strengthening of the halogen bond, which varied between 3.3 and 5.5 kcal mol⁻¹. In most cases, the ortho placement yields the largest perturbation, followed by meta and then para, but this trend is not universal. Parallel to these substituent effects is a progressive lengthening of the covalent C−I bond. Formation of the halogen bond reduces the NMR chemical shielding of all three nuclei directly involved in the C−I⋅⋅N interaction. The deshielding of the electron donor N is most closely correlated with the strength of the bond, as is the coupling constant between I and N, so both have potential use as spectroscopic measures of halogen bond strength.     

Conformational studies of some 2-phenylpropyl derivatives by NMR spectroscopy and use of lanthanide shift reagents

The conformational distribution of CH₃CH(Ph)CH₂X (X = OH, OCH₃, NH₂ Cl) has been studied by NMR and IR spectroscopy. The results are interpreted in favour of the conformers with methoxy- or chloro-groups anti to the phenyl group, but the amino group anti to the methyl group. For the alcohol both forms are about equally populated. It is suggested that intra-molecular hydrogen bonding might be affecting the conformational equilibria when X = OH, NH₂.     

Cover Feature: An Exploration of the Hydrogen Bond Donor Ability of Ammonia (ChemPhysChem 20/2023)

Ammonia is an important molecule due to its wide use in the fertiliser industry. It is also used in aminolysis reactions. Theoretical studies of the reaction mechanism predict that in reactive complexes and transition states, ammonia acts as a hydrogen bond donor forming N−H⋅⋅⋅O hydrogen bond. Experimental reports of N−H⋅⋅⋅O hydrogen bond, where ammonia acts as a hydrogen bond donor are scarce. Herein, the hydrogen bond donor ability of ammonia is investigated with three chalcogen atoms i. e. O, S, and Se using matrix isolation infrared spectroscopy and electronic structure calculations. In addition, the chalcogen bond acceptor ability of ammonia has also been investigated. The hydrogen bond acceptor molecules used here are O(CH₃)₂, S(CH₃)₂, and Se(CH₃)₂. The formation of the 1 : 1 complex has been monitored in the N−H symmetric and anti-symmetric stretching modes of ammonia. The nature of the complex has been delineated using Atoms in Molecules analysis, Natural Bond Orbital analysis, and Energy Decomposition Analysis. This work presents the first comparison of the hydrogen bond donor ability of ammonia with O, S, and Se.     

Comparative Study of Halogen‐ and Hydrogen‐Bond Interactions between Benzene Derivatives and Dimethyl Sulfoxide

The halogen bond, similar to the hydrogen bond, is an important noncovalent interaction and plays important roles in diverse chemistry‐related fields. Herein, bromine‐ and iodine‐based halogen‐bonding interactions between two benzene derivatives (C₆F₅Br and C₆F₅I) and dimethyl sulfoxide (DMSO) are investigated by using IR and NMR spectroscopy and ab initio calculations. The results are compared with those of interactions between C₆F₅Cl/C₆F₅H and DMSO. First, the interaction energy of the hydrogen bond is stronger than those of bromine‐ and chlorine‐based halogen bonds, but weaker than iodine‐based halogen bond. Second, attractive energies depend on 1/rⁿ, in which n is between three and four for both hydrogen and halogen bonds, whereas all repulsive energies are found to depend on 1/r^8.5. Third, the directionality of halogen bonds is greater than that of the hydrogen bond. The bromine‐ and iodine‐based halogen bonds are strict in this regard and the chlorine‐based halogen bond only slightly deviates from 180°. The directional order is iodine‐based halogen bond>bromine‐based halogen bond>chlorine‐based halogen bond>hydrogen bond. Fourth, upon the formation of hydrogen and halogen bonds, charge transfers from DMSO to the hydrogen‐ and halogen‐bond donors. The CH₃ group contributes positively to stabilization of the complexes.     

Viscosity of aqueous NH4Cl and tracer diffusion coefficients of ions,water and non-electrolytes in aqueous NH4Cl,KI, and MgCl2 at 25°C

Viscosities for aqueous NH₄Cl and tracer diffusion coefficients for²²Na⁺,³⁶Cl^–, HTO, and CH₃OH, acetone and dimethylformamide (all¹⁴C-labelled) in NH₄Cl supporting electrolyte are reported for 25°, together with tracer diffusion coefficients for²²Na⁺,³⁶Cl^–, and¹⁴CH₃OH in 1M KI, and for¹⁴CH₃OH in 1M MgCl₂. The diffusion coefficient of HTO in NH₄Cl solutions is slightly larger, for most of the concentration range investigated (0.05 to 4.5 M), than the value for pure water and is almost unaffected by the supporting electrolyte up to about 4M. Similar behavior is shown by CH₃OH, acetone and dimethylformamide in NH₄Cl solutions. Onsager limiting law behavior is approached by Cl^– at NH₄Cl concentrations in the 0.05–0.1M region but at much lower concentrations by Na⁺.     

Influence of coordination on N-H X hydrogen bonds. Part II. Zn(NH3)2Br2 and Ni(NH3)2X2 (X is Cl and Br)

Microcrystalline samples of Zn(NH₃)₂Br₂ and Ni(NH₃)₂X₂ (X is Cl⁻ and Br⁻) have been investigated from 100 to 293 K using X-ray diffraction and IR spectroscopy measurements (range 400–4000 cm⁻) performed with isotopically dilute (5% deuterated) samples. Values of Δν(ND)/ΔT for all compounds hint at the existence of hydrogen bonds. Zn(NH₃)₂Br₂ shows The dynamics of ammonia molecules even at 100 K, and no indications are apparent that dynamic disorder of ammonia molecules takes place in Ni(NH₃)₂X₂ (X is Cl⁻ and Br⁻). A comparison between octahedrally coordinated ammoniates [Ni(NH₃)₆]Br₂, Ni(NH₃)₂Br₂ and [Zn(NH₃)₆]Br₂ with tetrahedrally coordinated ones [Zn(NH₃)₂Br₂] leads to the conclusion that the lower coordination number increases the strength of the hydrogen bonds. Because this effect is small, it is not possible to separate the influence of the type of coordinating ions for one coordination number from the influence of the coordination number itself.     

Trans influence and charge transfer transitions X → Co in cobalt (III) complexes of the type trans [CO(en)2XY]z

The energies of the CT transitiopns X → Co have been measured for a series of compounds of the type trans [CO(en)₂XY]^+z, with X = Cl, Br and Y = Cl, Br, NH₃, OH, NCS, No₂, SO₃, CN. They depend upon the nature of the Yl igand. Values of the optical electronegativity of the CO d_z2 orbitals have been calculated, showing that the covalent character of the CoX bond increases in the following order of the Y ligands: NCS ≈ NH₃ ≈CN < OH < NO₂ < Cl ≈ Br < SO₃. This result is discussed along with the variations of the Co bonding forces.     

Effect of the intramolecular hydrogen bond on the electronic structure of organic molecules with a planar quasicycle

The electronic structure of the following organic molecules is studied using the HF/6-311G(d,p) method: malonic dialdehyde, acetylacetone, thiomalonic aldehyde, 2-XC₆H₄NH₂ aniline derivatives, 2-XC₆H₄OH phenol derivatives, 2-XC₆H₄SH thiophenol derivatives (X = CHO, COOH, COO^?, NO, NO₂, OH, OCH₃, SH, SCH₃, F, Cl, Br), 8-hydroxyquinoline, 8-mercaptoquinoline, tropolone. It is found that the intramolecular hydrogen bond (IHB) leads to a local electronic redistribution in the quasi-cycle, and above all to the electron density transfer among the immediate participants of IHB — from the hydrogen atom to the proton-acceptor atom. When the IHB of the S-H?O type forms, the electron density mainly decreases on sulfhydryl hydrogen atom and increases on sulfur atom.     

Theoretical study of the effects of substitution,solvation, and structure on the interaction between nitriles and methanol

We report an investigation on intermolecular interactions in R? CN ··· H? OCH₃ (R = H, CH₃, F, Cl, NO₂, OH, SH, SCH₃, CHO, COCH₃, CH₂Cl, CH₂F, CH₂OH, CH₂COOH, CF₃, SCOCH₃, SCF₃, OCHF₂, CH₂CF₃, CH₂OCH₃, and CH₂CH₂OH) complexes using density functional theory. The calculations were conducted on B3LYP/6‐311++G** level of theory for optimization of geometries of complexes and monomers. An improper hydrogen bonding (HB) in the H₃CO? H ··· NC? R complexes was observed in that N atom of the nitriles functions acts as a proton acceptor. Furthermore, quantum theory of “Atoms in Molecules” (AIM) and natural bond orbital (NBO) method were applied to analyze H‐bond interactions in respective complexes. The electron density (ρ) and Laplacian (?²ρ) properties, estimated by atoms in molecules calculations, indicate that H ··· N bond possesses low ρ and positive ?²ρ values, which are in agreement with partially covalent character of the HBs, whereas O? H bonds have negative ?²ρ values. In addition, the weak intermolecular force due to dipole–dipole interaction (U) is also considered for analysis. The examination of HB in these complexes by quantum theory of NBO method fairly supports the ab initio results. Natural population analysis data, the electron density, and Laplacian properties, as well as, the ν(O? H) and γ(O? H) frequencies of complexes, calculated at the B3LYP/6‐311++G** level of theory, are used to evaluate the HB interactions. The calculated geometrical parameters and conformational analysis in water phase solution show that the H₃CO? H ··· NC? R complexes in water are more stable than that in gas phase. The obtained results demonstrated a strong influence of the R substituent on the properties of complexes. Numerous correlations between topological, geometrical, thermodynamic properties, and energetic parameters were also found. © 2011 Wiley Periodicals, Inc. Int J Quantum Chem, 2012     

Relative stability of multiple bonds between germanium and arsenic. A theoretical study

Substituent effects on the potential energy surface of XGeAs (X=H, Li, Na, BeH, MgH, BH₂, AlH₂, CH₃, SiH₃, NH₂, PH₂, OH, SH, F, and Cl) were investigated by using B3LYP and CCSD(T) methods. The isomers include structures with formal double (GeAsX) and triple (XGeAs) bonds to germanium–arsenic, so a direct comparison of these types of species is possible. Our model calculations indicate that electropositively substituted GeAsX species are thermodynamically and kinetically more stable than their isomeric XGeAs molecules. Moreover, the theoretical findings suggest that F, OH, NH₂, and CH₃ substitution prefer to shift the double bond (GeAsX) by forming a triple bond (XGeAs).     

Tuning the Competition between Hydrogen and Tetrel Bonds by a Magnesium Bond

A computational study of the complexes formed by TF₃OH (T=C, Si, Ge) with three nitrogen-containing bases NCH, NH₃, and imidazole (IM) is carried out at the MP2/aug-cc-pVTZ level. TF₃OH can participate in two different types of noncovalent interactions: a hydrogen bond (HB) involving the hydroxyl proton and a tetrel bond (TB) with the tetel atom T. The strength of the HB is largely unaffected by the identity of T while the TB is enhanced as T grows larger. The HB is preferred over the TB for most systems, with the exception of GeF₃OH with either NH₃ or IM. MgCl₂ engages in a Mg⋅⋅⋅O Magnesium bond (Mg-bond) with the TF₃OH O atom, which cooperatively enhances both the HB and TB. The HB strengthening is particularly large for the NH₃ or IM bases, and especially for CF₃OH, but is slowly reduced as the T atom grows larger. The TB enhancement, on the other hand, behaves in the opposite fashion, accelerating for the larger T atoms. As a bottom line, the Mg-bond generally reinforces and accentuates the preference for the HB or TB that is already present in the dimer. The Mg-bond is also responsible for a proton transfer in the HB configurations with NH₃ and IM.