Towards the understanding of the spectroscopic behaviour of the C–H oscillator in C–HO hydrogen bonds: the effect of solvent polarity

The effect of solvent polarity versus specific C–HO contacts on the vibrational νC–H mode is studied using CHCl₃ as a model system. Ab initio SCI–PCM calculations show that the overall shift of the νC–H band, sometimes ascribed to the C–HO hydrogen bonding, can in fact be explained by the electrostatic interaction with a dielectric environment. The presence of a new νC–H band – assigned to the C–HO bonded forms – remains as the most reliable evidence of C–HO hydrogen bonding.     

Probing the accuracy of the isomerization energy of the 3-D morphed potential of Ar–HBr

Investigations of the lowest Σ-bending vibrations of Ar–DBr (v = 0) and Ar–HBr (v = 1) are reported using a co-axially configured submillimeter supersonic jet spectrometer. The v = 1 spectra were obtained using glow discharge excitation. Analyses of hyperfine substructure in these spectra provide accurate molecular parameters for Ar–DBr and Ar–BrD isomeric states, direct determination of their corresponding isomerization energies, and respective parameters in the v = 1 HBr stretching vibration of the Ar–HBr isotopomer. This experimental data provides a sensitive probe of the relative energies of potential minima for previously determined 3-D Ar–HBr morphed potential and compared with results from extrapolations to the CCSD(T)/CBS limit.     

Diels-Alder reaction volumes in the solid state and solution

The densities of anthracene, tetracyanoethylene, maleic anhydride, N-phenylmaleineimide, trans, trans-1,4-diphenylbuta-1,3-diene, and their Diels-Alder adducts were measured in the solid state and in solution at 25 °C. The reaction volumes in the solid state were calculated from the difference in molar volumes. They turned out to be low, close to each other (–4 to –11 cm³ mol^–1), and slightly different from the reaction volumes (–8±1 cm³ mol^–1) calculated from the van der Waals radii. The reaction volumes in solutions (–15 to –32 cm³ mol^–1) were found from the difference in partial molar volumes of the reactants in dioxane, acetonitrile, and 1,2-dichloroethane, The experimental Diels-Alder reaction volumes in solution are determined not only by the formation of new bonds in an adduct: a considerably higher contribution (to 75%) is made by a change in the volume of intermolecular empty spaces in solution on going from reactants to adducts.__________Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 11, pp. 2386–2390, November, 2004.     

Characteristic Features of the Rhodium Stereochemistry in the Structure of Carbonyls and Organometallic Compounds

Characteristics of the Voronoi–Dirichlet polyhedra (VDP) were used to carry out crystal chemical analysis of 160 compounds containing 308 RhC _n or RhC _n Rh _m coordination polyhedra. The volume of the rhodium VDP virtually does not depend on the coordination number (C.N.), which varies from 4 to 12, in spite of the pronounced variation of the Rh–C (1.72–2.83 Å) and Rh–Rh (2.55–2.97 Å) bond lengths. It is shown that the VDP parameters allow one to estimate quantitatively the main features of rhodium stereochemistry irrespective of the nature (Rh or C) and the number (n varies from 3 to 12 and m varies from 0 to 6) of atoms in the first coordination sphere.     

Buffer Standards for the Physiological pH of Zwitterionic Compounds,MOBS and TABS from 5 to 55°C

The values of the second dissociation constant, pK₂, and related thermodynamic quantities of 4-(N-morpholino)butanesulfonic acid (MOBS) and N-tris(hydroxymethyl)-4-aminobutanesulfonic acid (TABS) have already been reported over the temperature range 5–55°C including 37{°}C. This paper reports the pH values of twelve equimolal buffer solutions at designated pH (s) with the following compositions: (a) mixtures of MOBS (0.05 mol-kg^–1) + NaMOBS (0.05 mol-kg^–1); (b) MOBS (0.08 mol-kg^–1) + NaMOBS (0.08 mol-kg^–1); (c) MOBS (0.08 mol-kg^–1) + NaMOBS (0.08 mol-kg^–1) + NaCl (0.08 mol-kg^–1); (d) TABS (0.05 mol-kg^–1) + NaTABS (0.05 mol-kg^–1); and (e) TABS (0.08 mol-kg^–1) + NaTABS (0.08 mol-kg^–1); and (f) TABS (0.08 mol-kg^–1) + NaTABS (0.08 mol-kg^–1) + NaCl (0.08 mol-kg^–1). Two buffer solutions have ionic strengths I= 0.05 mol-kg^–1, another two have I=0.08 mol-kg^–1, and the remaining two buffer solutions have I= 0.16 mol-kg^–1, which is close to that of the clinical fluids (blood serum). These buffers have been recommended as a useful pH standard for the measurements of physiological solutions. Conventional pH values of all six buffer solutions from 5–55°C, as well as those obtained from the liquid junction potential correction at 25 and 37{°}C have been calculated. The flowing-junction calomel cell has been utilized to measure E_j, the liquid junction potential.     

The effect of high pressure on the ion pair equilibrium constant of alkali metal fluorides: A spectrophotometric study

Bromophenol blue indicator was used in UV-visible spectrophotometric measurements to study ion association constants of alkali metal fluorides. The equilibrium constants for the ion pair formation of the alkali metal fluorides were determined as a function of ionic strength at one atmosphere pressure and 25°C. The effect of pressure on these association constants was measured at a constant total ionic strength of 1.0 mol-kg^–1 over a pressure range of 1 to 2000 atmospheres at 25°C. The pressure dependences of the stoichiometric association constants of the alkali metal fluorides are given by: lnK _LiF ^* =0.77–2.47×10^–4P–2.12×10^–8P²; lnK _NaF ^* =0.53–1.08×10^–4P–1.66×10^–8P²; lnK _KF ^* =0.24–4.41×10^–5P–7.15×10^–8P²; lnK _RbF ^* =–0.17–8.65×10^–5P–4.51×10^–8P²; and lnK _CsF ^* = –0.37–1.14×10^–4P–6.82×10^–8P², where P is the pressure in atmospheres. The stoichiometric molar volume and compressibility changes for ion pair formation of the alkali metal fluorides were evaluated from the pressure dependence of K _MF ^* data. The thermodynamic association constants were also calculated making use of activity coefficient data from the Pitzer equations. The partial molal volume and compressibility changes for ion pair formation of each alkali metal fluoride are reported.     

Osmotic Coefficients and Activity Coefficients of Nonaqueous Electrolyte Solutions. Part 2. Lithium Perchlorate in the Aprotic Solvents Acetone, Acetonitrile, Dimethoxyethane, and Dimethylcarbonate

Vapor pressure lowering by the addition of lithium perchlorate to the aprotic solvents acetone (0.02–0.6 m), acetonitrile (0.05–1.2 m), dimethoxyethane (0.02–0.4 m), and dimethylcarbonate (0.03–1.8 m) was measured at 25°C with high precision. The experimental data for the corresponding osmotic coefficients are compared to those obtained from the Pitzer equations and chemical model calculations. Mean activity coefficients are derived from the osmotic coefficients.     

Triterpene and steroid glycosides of the genusMelilotus and their genins III. Funkioside B and protodioscin from the seeds ofMelilotus tauricus

Two steroid glycosides belonging to the furostan series — funkioside B and protodioscin — have been isolated from the seeds of the plantMelilotus tauricus (Bieb.).Translated from Khimiya Prirodnykh Soedinenii, No. 6, pp. 766–770, November–December, 1994.     

The Solvent Effect on the Rate of Reaction between Propanethiol and Chlorine Dioxide

The products and kinetics of the liquid-phase oxidation of propanethiol by chlorine dioxide in organic media (n-heptane, 1,4-dioxane, carbon tetrachloride, benzene, diethyl ether, ethyl acetate, acetone, and acetonitrile) at temperatures from –10 to 70°C were examined. The reaction rate constants and activation parameters were measured in the above solvents. A strong solvent effect on the reaction kinetics was found (k= 1.67 × 10^–3or 52.7 l mol^–1s^–1(25°C) in heptane or acetonitrile, respectively). The data were analyzed in terms of the Leydler–Eyring and Koppel–Palm equations. The formation of high-polarity intermediates in the test reaction was suggested.     

Study of complexation in the Nd3+-SCN− system

Summary A spectroscopic study of the association in the Nd³⁺-SCN^– system is presented. A characteristic change of the molar absorptivity of the solution with a plateau at 2–4M [SCN^–] and an increase at 4–8M [SCN^–] reflects the change from outer- to innersphere complexation.

---

Untersuchungen zur Komplexierung im Nd³⁺-SCN^–-System

Zusammenfassung Es wird eine spektroskopische Studie der Assioziationsverhältnisse im Nd³⁺-SCN^–-System präsentiert. Die charakteristische Änderung in der molaren Absorption der Lösung mit einem Plateau bei 2–4M [SCN^–] und ein Anstieg bei 4–8M [SCN^–] ist auf einen Wechsel von außensphärischer zu innensphärischer Komplexierung zurückzuführen.

     

Triterpene and steroid glycosides of the genusMelilotus and their genins IV. Trillin and dioscin from the seeds ofMelilotus tauricus

Two steroid glycosides belonging to the spirostan series — trillin and dioscin — have been isolated from the seeds of the plantMelilotus tauricus (Bieb.) Ser.Translated from Khimiya Prirodnykh Soedinenii, No. 6, pp. 770–772, November–December, 1994.     

On the hyperfine structure in the configuration 5f 3 6d7s 2 of neutral uranium

A Laser Induced Fluorescence experiment in an atomic beam has yielded experimental values of hyperfine structure (hfs) constants A and B for 28 low odd levels and 22 even levels, with an accuracy around 10^–5 cm^–1 for A and 10^–3 cm^–1 for B. A Condon Slater Racah parametric interpretation of the hfs data concerning 22 of these levels, on the basis of the configuration 5f ³ 6d 7s ², has provided values of monoelectronic parametersa _5f ⁰¹ ,a _5f ¹² ,a _6d ⁰¹ ,b _5f ⁰² ,b _6d ⁰² ,b _6d ¹³ . A least square fit calculation has been compared to the values deduced from Dirac-Fock monoelectronic radial integrals. The fit represents 18 A (16 B) values ranging from –0.42 to –2.96 mK (from –41 to 156 mK) with discrepancies less than 0.2 mK (8 mK).     

Chemical and immunochemical investigation of the lipopolysaccharides ofVibrio alginolyticus

A chemical and immunochemical study of the LPSs of the microorganismsVibrio alginolyticus (strains 1385–80, 945–80, and 2076–80) has been made. A difference in the monosaccharide composition of the LPSs of the strains studied has been shown. It had been established that the LPSs of strains 945–80 and 2076–80 possess a high serological specificity, while the LPS of strain 1385–80 differ serologically from them. A suggestion is made of the role of different monosaccharides in the formation of the immunochemical determinants of the LPSs of the strains studied.Pacific Ocean Institute of Bioorganic Chemistry of the Far-Eastern Scientific Center of the USSR Academy of Sciences, Vladivostok. Translated from Khimiya Priorodnykh Soedinenii, No. 5, pp. 652–657, September–October, 1987.     

Co-hydrolysis products of tetraethoxysilane and methyltriethoxysilane in the presence of tetramethylammonium ions: Part 2 [1]

²⁹Si NMR peaks due to species with the double four-membered ring siloxane backbone composed of both Si(O^–)_4/2 and CH₃Si(O^–)_3/2 units, (CH₃) _n Si₈O _{20 – n} ^{/(8 – n) –} (n=1–3), formed by co-hydrolysis of tetraethoxysilane and methyltriethoxysilane in the presence of tetramethylammonium ions in methanol have been assigned. It has been found that ²⁹Si NMR peaks due to Si(OSi)₃(O^–) units shift to lower frequencies by replacement of the adjacent Si(O^–)_4/2 units by CH₃Si(O^–)_3/2 units, in other words, with increasing m value in Si[OSi(O^–)₃]_{3 – m} [OSi(CH₃) (O^–)₂] _m (O^–) (m=0–2). Peaks from CH₃ Si(OSi)₃ units in the species have also appeared as separated due to the kind of neighbor structural units. On the basis of the assignments, positions of CH₃Si(O^–)_3/2 units in the cubic octameric siloxane framework of (CH₃) _n Si₈O _{20 – n} ^{/(8 – n) –} (n=2, 3), for both of which three isomers are present, have been estimated.     

Quantitative determination of the total iridoids in plants of the genusLagochilus

Chromatophotocolorimetric and accelerated photocolorimetric methods of determining 8-O-harpagide and harpagide in the epigeal parts of the plantsL. platycalyx andL. setulosus have been developed using 8-O-acetylharpagide as the standard substance.Translated from Khimiya Prirodnykh Soedinenii, No. 6, pp. 723–727, November–December, 1994.     

Dependence of the physiological activity of the sulfur-containing alkaloids ofdipthychocarpus strictus on their chemical structure

A dependence of the physiological activity of the sulfur-containing alkaloids ofDipthychocarpus strictus on their structure has been reveated.Translated from Khimiya Prirodnykh Soedinenii, No. 3, pp. 417–419, May–June, 1997.     

Structure and torsional flexibility of the linkage between guanine and fluorene residues in the deoxyguanosine–aminofluorene and deoxyguanosine–acetylaminofluorene carcinogenic adducts

Potential energy surfaces for rotations around two central CN bonds in N-(deoxyguanosin-8-yl)-2-acetylaminofluorene (AAF–dG) and its deacetylated derivative (AF–dG) were studied using Amber 95 molecular mechanics. Both of these adducts are known to be strong mutagens and carcinogens. New Amber 95 force field parameters were derived for the linkage connecting guanine and fluorene moieties in AAF–dG and AF–dG. For this purpose, we determined ab initio MP2/cc-pVDZ//B3-LYP/6-31G* and polarized continuum model Hartree–Fock/6-31G* potential energy surfaces of smaller model systems that included the N-methylimidazole–acetylaniline and N-methylimidazole–aniline adducts. The molecular mechanics parameters were adjusted to minimize differences between the gas-phase ab initio and molecular mechanics surfaces of these model systems. The resulting parameters were transferred to AF–dG and AAF–dG. The barrier for the rotation of the fluorene residue in AF–dG was found to be less than 2 kcal/mol. Such a small barrier renders the fluorene moiety freely rotatable at room temperature. In contrast, the fluorene rotation in AAF–dG is hindered by a significantly larger barrier of 10 kcal/mol. This barrier corresponds to conformations in which the fluorene and acetyl groups lie in the same plane, and is largely due to steric repulsion. Similarly, the coplanar arrangement of guanine and the bridging amino or acetyl groups is disfavored by 5–10 kcal/mol, with AAF–dG again being the more rigid of the two molecules. Energy minima for a rotation around a bond between guanine and the bridging nitrogen are found at ±80° in AAF–dG, and at 120° and –90° for AF–dG. Overall, the fluorene–dG linkages in AF–dG and AAF–dG adducts have significantly different equilibrium structures and torsional flexibilities. These differences may be contributing factors for the observed disparity in mutagenic effects of these adducts.Electronic Supplementary Material: Supplementary material is available in the online version of this article at Acknowledgements. This work was supported by the NSF REU grant no. CHE-0243825 to Loyola University Chicago. We thank to Tom Ellenberger and Shuchismita Dutta for providing us with their results prior to publication.     

Extending the dynamic range of the determination of copper by adsorption differential pulse stripping method using a principal component artificial neural network

A principal component artificial neural network (PC-ANN) has been applied for the analysis of the voltammogram data of Cu(II) and Cu(II)–PAN complex for extending the dynamic range of the determination of Cu(II) (5–550 μg/l). A three layer back-propagation network (6:5:1) was used with learning rate (r=0.09) and momentum (m=0.9), with sigmoidal transfer function in the hidden layer and one bias node in the input layer. Overall, the application of PC-ANN enables the extension of the dynamic range of the determination of Cu(II) from its narrow linear range (5–50 μg/l) to the high dynamic range (5–550 μg/l).     

Potential-dependent chemisorption of carbon monoxide on platinum electrodes: new insight from quantum-chemical calculations combined with vibrational spectroscopy

Density functional theory (DFT) using the finite cluster approach is utilized to compute binding energies, bond geometries, and vibrational properties of carbon monoxide adsorbed on Pt(111) as a function of the external interfacial field, focusing attention on the metal–CO bond itself. Comparison with electrode potential-dependent frequencies for the metal–CO (ν_M–CO) as well as the much-studied intramolecular C---O (ν_CO) vibration, as measured by in-situ Raman and infrared spectroscopy, facilitate their interpretation in terms of metal-chemisorbate bonding for this archetypal electrochemical system. Decomposing the calculated metal–CO binding energy and vibrational frequencies into individual orbital and steric repulsion components enables the role of such quantum-chemical interactions to the field- (and hence potential-) dependent bonding to be assessed. No simple relationship between the field(F)-dependent binding energies and the ν_M–CO frequencies is evident. While the DFT ν_M–CO–F slopes are negative at positive and small–moderate negative fields, reflecting the prevailing influence of back-donation, a ν_M–CO–F maximum is obtained at larger negative fields for atop CO, and a plateau for hollow-site CO. This Stark-tuning behavior reflects largely offsetting field-dependent contributions from π and σ surface bonding, and can also be rationalized on the basis of changes in the electrostatic component of ν_M–CO from increasing M–CO charge polarization. A rough correlation between the field-dependent ν_M–CO frequencies and the corresponding bond distances, r_M–CO, is observed for hollow and atop CO in that r_M–CO shortens towards less positive fields, but becomes near-constant at moderate–large negative fields. A more quantitative correlation between the field-dependent C---O frequencies and bond lengths is also evident. In harmony with earlier findings (and unlike the ν_M–CO–F behavior), the ν_CO–F dependence is due chiefly to changes in the back-donation bonding component. The overall vibrational frequency-field behavior predicted by DFT is also in semi-quantitative concordance with experimental potential-dependent spectra.     

Possible artifacts occurring in the calculation of intermolecular energies from delocalized pictures

The intermolecular energy between two identical subsystems may be calculated from symmetrydelocalized MO's resulting for instance from a preliminary SCF calculation of the supersystem. Then each second-order energy correction mixes intramolecular correlation,R ^–6 intermolecular dispersion energy, andR ^–3 components. TheR ^–3 components disappear through subtle cancellations. The shifted Epstein-Nesbet energy denominators introduce an artificial second-order intermolecularR ^–1 component, which would be cancelled by off-diagonal third-order terms, as well as a bad asymptotic limit at infinite distances. TheR ^–1 artifact will also occur in strong symmetrical chemical bonds calculated in the Epstein-Nesbet perturbation scheme from delocalized MO's. These defects will occur in all variational approximate CI techniques which neglect off-diagonal elements between delocalized doubly excited determinants. These artifacts are avoided when using the Moller-Plesset definition of the zeroth order Hamiltonian or when starting from (SCF)localized MO's (even in the Epstein-Nesbet perturbation). The discussion is exemplified on an accurateab initio calculation of the Ar₂ molecule.