Synthesis, variable temperature NMR investigations and solid state characterization of novel octafluorofluorene compounds

The preparation of a number of new 9-substituted octafluorofluorene derivatives, solution NMR studies, and the first examples of solid state structures of octafluorofluorenes [1,2,3,4,5,6,7,8-octafluorofluorene, C₁₃H₂F₈, 1; 1,2,3,4,5,6,7,8-octafluoro-9-(pentafluoro)phenylfluorene, C₁₉HF₁₃, 8; 1,1′,2,2′,3,3′,4,4′,5,5′,6,6′,7,7′,8,8′-hexadecafluoro-9,9′-bifluorenyl, C₂₆H₂F₁₆, 11] are reported. Variable temperature ¹⁹F NMR investigations have been performed on the 9-aryl substituted compounds 1,2,3,4,5,6,7,8-octafluoro-9-(pentafluoro)phenyl-9-hydroxyfluorene, C₁₉HF₁₃O, 4, 1,2,3,4,5,6,7,8-octafluoro-9-(nonafluoro-4′-biphenylyl)-9-hydroxyfluorene, C₂₅HF₁₇O, 5, and 8, and the energetic barriers to rotation of the aryl have been determined. A lower rotational barrier is observed for compound 4 with respect to compound 8, while 5 does not show fluxional behaviour below 338 K. The results of the variable temperature experiments performed on 8 have been rationalized by 2D NMR studies, and compared to the solid state data resulting from the X-ray structural analysis.     

Syntheses and structures of doubly tucked-in titanocene complexes with tetramethyl(aryl)cyclopentadienyl ligands

Titanocene–bis(trimethylsilyl)ethyne complexes [Ti(η⁵-C₅Me₄R)₂(η²-Me₃SiCCSiMe₃)], where R=benzyl (Bz, 1a), phenyl (Ph, 1b) and p-fluorophenyl (FPh, 1c), thermolyse at 150–160°C to give products of double C---H activation [Ti(η⁵-C₅Me₄Bz){η³:η⁴-C₅Me₃(CH₂)(CHPh)}] (2a), [Ti(η⁵-C₅Me₄Bz){η³:η⁴-C₅Me₂Bz(CH₂)₂}] (2a′), [Ti(η⁵-C₅Me₄Ph){η³:η⁴-C₅Me₂Ph(CH₂)₂}] (2b), and [Ti(η⁵-C₅Me₄FPh){η³:η⁴-C₅Me₂FPh(CH₂)₂}] (2c). In the presence of 2,2,7,7-tetramethylocta-3,5-diyne (TMOD) the thermolysis affords analogous doubly tucked-in compounds bearing one η³:η⁴-allyldiene and one η⁵-C₅Me₄R ligand having TMOD attached by its C-3 and C-6 carbon atoms to the vicinal methylene groups adjacent to the substituent R (R=Bz (3a), Ph (3b), and FPh (3c)). Compound 3a is smoothly converted into air-stable titanocene dichloride [TiCl₂{η⁵-C₅Me₂Bz(CH₂CH(t-Bu)CH=CHCH(t-Bu)CH₂)}(η⁵-C₅Me₄Bz)] (4a) by a reaction with hydrogen chloride. Yields in both series of doubly tucked-in complexes decrease in the order of substituents: BzPh>FPh. Crystal structures of 1c, 2a, 2b, and 3b have been determined.     

19F VT NMR: Novel Tm3+ and Ce3+ Complexes Provide New Insight into Temperature Measurement Using Molecular Sensors

In the past few decades, magnetic resonance spectroscopy (MRS) and MR imaging (MRI) have developed into a powerful non-invasive tool for medical diagnostic and therapy. Especially ¹⁹F MR shows promising potential because of the properties of the fluorine atom and the negligible background signals in the MR spectra. The detection of temperature in a living organism is quite difficult, and usually external thermometers or fibers are used. Temperature determination via MRS needs temperature-sensitive contrast agents. This article reports first results of solvent and structural influences on the temperature sensitivity of ¹⁹F NMR signals of chosen molecules. By using this chemical shift sensitivity, a local temperature can be determined with a high precision. Based on this preliminary study, we synthesized five metal complexes and compared the results of all variable temperature measurements. It is shown that the highest ¹⁹F MR signal temperature dependence is detectable for a fluorine nucleus in a Tm³⁺-complex.     

Speciation of water-soluble titanium citrate: Synthesis,structural, spectroscopic properties and biological relevance

Titanium(IV) citrate complexes with different anions Na₃[Ti(H₂cit)₂(Hcit)] · 9H₂O (1), K₄[Ti(H₂cit)(Hcit)₂] · 4H₂O (2), K₅[Ti(Hcit)₃] · 4H₂O (3) and Na₇[TiH(cit)₃] · 18H₂O (4) (H₄cit = citric acid) were isolated in pure forms from the solutions of titanate and citrate at various pH values. X-ray structural analyses revealed the presence of a monomeric tricitrato titanium unit in the four complexes. Each Ti(IV) ion is coordinated octahedrally by the three citrate ligands in different protonated forms. The citrate ligand chelates bidentately to the titanium ion through its negatively charged α-alkoxy and α-carboxy groups. This is consistent with the large downfield ¹³C NMR shifts for the carbon atoms bearing the α-alkoxy and α-carboxy groups. The very strong hydrogen-bonds existing in the protonated and deprotonated β-carboxy groups may be the key factor for the stabilization of the titanium citrate complexes. When the pH value is lower than 7.0, ¹³C NMR spectra of 1:3 Ti:citrate solutions are similar to those of the titanium citrate complexes isolated at the corresponding pH values. The dissociation of free citrate increases with the rise of pH value. However, ¹³C NMR spectra of 1:3 Ti:citrate solutions indicate that there may exist different citrate titanium species when the pH value is higher than 7.0.     

Structural and NMR Studies of the Hexameric Copper(I) Complex with N‐n‐butyl‐N′‐ethoxycarbonyl‐thioureate

The copper sulfide mineral flotation collector, N‐n‐butyl‐N′‐ethoxycarbonyl‐thiourea (H₂bectu), and the 1:1 hexameric copper(I) thioureate complex, [Cu(Hbectu)]₆, have been characterized by single crystal X‐ray diffraction. H₂bectu crystallizes in the triclinic space group with a = 5.2754(4), b = 9.0042(7), c = 12.6030(9) Å, α = 80.528(6), β = 90.173(6), γ = 76.472(7)°. An intramolecular N‐H···O hydrogen bond between the thioamide proton and carbonyl oxygen forms a planar six‐membered ring in the central core of the molecule with C=O, C=S and C‐N bond lengths in accord with those reported for other N‐alkyl/aryl‐N′‐acyl‐thiourea compounds. [Cu(Hbectu)]₆ crystallizes in the monoclinic space group C2/c with a = 23.269(5), b = 13.243(4), c = 23.037(7) Å, β = 91.81(2)° as discrete hexameric clusters disposed about a crystallographic centre of symmetry with a Cu₆S₆ core consisting of two Cu₃S₃ chair‐shaped rings linked by coordination of the deprotonated amide nitrogen atom to a copper atom in the adjacent ring. The six ligands assemble as a paddlewheel structure with the ethoxy and n‐butyl substituents packing in an alternating head to tail arrangement. Temperature dependent solution ¹H NMR spectroscopic studies show that the hexameric structure of the complex is maintained in solution.     

Titanocene complexes of the N-methyl and N-phenyl-1,3-thiazoline-2-thione-4,5-dithiolates and 4,5-diselenolate ligands

Cp₂Ti(dithiolene) and Cp₂Ti(diselenolene) complexes containing the N-methyl-1,3-thiazoline-2-thione-4,5-dithiolate ligand (Me-thiazdt), the N-phenyl-1,3-thiazoline-2-thione-4,5-dithiolate ligand (Ph-thiazdt) and the N-methyl-1,3-thiazoline-2-thione-4,5-diselenolate ligand (Me-thiazds) have been synthesized. Three approaches have been developed in order to generate the dithiolene or the diselenolene ligands which were reacted with Cp₂TiCl₂ to form the corresponding heteroleptic complexes. Their X-ray crystal structures, UV-Vis absorption spectra as well as their redox properties, determined by cyclic voltammetry have been investigated and discussed. Variable-temperature ¹H NMR experiments have been performed in order to determine the activation energies of the chelate ring inversion.     

Deprotonated diindolylmethanes as dianionic analogues of scorpionate bis(pyrazolyl)borate ligands: synthesis and structural characterization of representative titanocene and zirconocene complexes

Deprotonation of di(3-methylindol-2-yl)phenylmethane (L₂H₂) or with two equivalents of ⁿBuLi, followed by reactions with Cp₂TiCl₂ or Cp₂ZrCl₂ yielded complexes . Compounds 1-4 were characterized by NMR spectroscopy, and compounds 1, 3, and 4 were further analyzed by X-ray crystallography and elemental analysis. The molecular structures of 1, 3, and 4 illustrate that chelating di(3-methylindol-2-yl)methanes have a structural relationship to coordinated bis(pyrazolyl)borates.     

Structural investigations of paramagnetic metalloproteins using high-resolution NMR spectroscopy: iron-sulfur and copper proteins

Current approaches to the structural investigations of paramagnetic metal-containing proteins in solution using NMR spectroscopy are surveyed taking iron-sulfur and copper-containing proteins as examples.     

CpNi(diselenolene)] neutral radical complexes: electron paramagnetic resonance and density functional theory investigations

77Se-enriched CpNi(bds) (bds = 1,2-benzenediselenolate), has been synthesized and its g tensor and 77Se hyperfine tensors have been obtained from its frozen solution electron paramagnetic resonance (EPR) spectrum. These parameters are consistent with those calculated by density functional theory (DFT); it is shown that 10% of the spin is localized on each selenium and that the direction associated to the maximum 77Se couplings is aligned along the gmin direction, perpendicular to the Ni(bds) plane. EPR measurements and DFT calculations are also carried out on the 77Se enriched complex CpNi(dsit) as well on the two dithiolene analogues CpNi(bdt) and CpNi(dmit). The optimized structures of the isolated CpNi(bds) and CpNi(bdt) complexes have been used to generate the idealized dimers (bds)NiCp...CpNi(bds) and (bdt)NiCp...CpNi(bdt) characterized by Cp...Cp overlap. The exchange parameters J calculated at the DFT level for these systems are in reasonable accord with the experimental values. The influence of the geometry of the dimer on its magnetic properties is assessed by calculating the variation of J as a function of the relative orientation of the two Ni(diselenolene) or Ni(dithiolene) planes.     

Syntheses and structural studies of mononuclear arene ruthenium complexes with nitrogen-based chelating ligands

Dinuclear arene ruthenium complexes [(η⁶-arene)Ru(μ-Cl)Cl]₂ (arene?=?C₆H₆; p ⁱPrC₆H₄Me; C₆Me₆) and monomeric cyclopentadienyl complexes [(η⁵-Cp)Ru(PPh₃)₂Cl] (Cp?=?cyclopentadienyl) react with polypyridyl nitrogen ligands L¹ (3-(pyridin-2-yl)-1H-1,2,4-triazole) and L² (1,3-bis(di-2-pyridylaminomethyl)benzene) in methanol to afford cationic mononuclear compounds [(η⁶-arene)Ru(L¹)Cl]⁺ (arene?=?C₆H₆, 1; p ⁱPrC₆H₄Me, 2; C₆Me₆, 3), [(η⁶arene)Ru(L²)Cl]⁺ (arene?=?C₆H₆, 4; p ⁱPrC₆H₄Me, 5; C₆Me₆, 6), [(η⁵-Cp)Ru(L¹)(PPh₃)]⁺ (7), and [(η⁵Cp)Ru(L²)(PPh₃)]⁺ (8). All cationic mononuclear compounds were isolated as their hexafluorophosphate salts and characterized by elemental analyses, NMR, and IR spectroscopic methods and some representative complexes by UV-Vis spectroscopy. The solid state structures of two derivatives, [6]PF₆ and [7]PF₆, have been determined by the X-ray structure analysis.     

Synthesis and characterisation of the platinum complexes [PtCl(CClPAr)(PPh3)2] and [PtCl(CClPAr′)(PPh3)2] as potential intermediates in the preparation of phosphaalkynes

Oxidative addition reactions of Cl₂CPR (R = 2,4,6-tris(trifluoromethyl)phenyl (Ar) or 2,6-bis(trifluoromethyl)phenyl (Ar′) with Pt(PPh₃)₄ yield the cis and trans (at platinum) complexes [PtCl(ClCPAr)(PPh₃)₂] and [PtCl(ClCPAr′)(PPh₃)₂]. All starting materials and intermediates have been characterised by NMR spectroscopy. The crystal and molecular structures of the trans-platinum complexes have been determined by single-crystal X-ray diffraction at low temperature.     

Cation-controled formation of N,N′-dialkylimidazolium cadmium-thiocyanate complexes: synthesis and structural characterization

Three new N,N′-dialkylimidazolium salts of cadmium-thiocyanate, [EtMeIm]₂[Cd₂(SCN)₆] (2), [C₆H₄(CH₂ImMe)₂][Cd(SCN)₄] (3), [C₆Me₃(CH₂ImMe)₃][CdBr₃(SCN)](NO₃) (4) have been prepared, and their crystal structures have been determined by X-ray diffraction. Crystal data: 2, monoclinic, C2/c, a=18.349(4) Å, b=7.8667(18) Å, c=21.399(5) Å, β=110.346(4)°, V=2896.1(11) Å³, Z=4, and R1=0.0561; 3, monoclinic, C2/c, a=20.347(7) Å, b=14.029(5) Å, c=9.380(3) Å, β=112.034(6)°, V=2482.1(15) Å³, Z=4, and R1=0.0397; 4, hexagonal, P6₃, a=b=10.7634(8) Å, c=16.0315(17) Å, V=1608.4(2) Å³, Z=2, and R1=0.0569. Compound 2 consists of triply bridged infinite one-dimensional cadmium-thiocyanate chains, and two independent cadmium atoms are octahedrally coordinated in 2N4S and 4N2S geometry, respectively. In 3, the cadmium atom is octahedrally coordinated with two cis N-bonded monodentate NCS⁻ ligands and four bridging SCN⁻ in a S trans to S, and N trans to N coordination fashion, and thus form doubly bridged infinite one-dimensional chains. Whereas 4 is mononuclear, consisting of a discrete [C₆Me₃(CH₂ImMe)₃]³⁺ cation, a nitrate, and [CdBr₃(SCN)]⁻ ion, and each cadmium(II) ion is coordinated to three bromide and one nitrogen atom of SCN⁻ ion. The structures of these compounds are dictated by the imidazolium cations.     

Synthesis and structure of ansa-cyclopentadienyl pyrrolyl titanium complexes: [(η-C5H4)CH2(2-C4H3N)]Ti(NMe2)2 and [1,3-{CH2(2-C4H3N)}2(η-C5H3)]Ti(NMe2)

Reaction of ansa-cyclopentadienyl pyrrolyl ligand (C₅H₅)CH₂(2-C₄H₃NH) (2) with Ti(NMe₂)₄ affords bis(dimethylamido)titanium complex [(η⁵-C₅H₄)CH₂(2-C₄H₃N)]Ti(NMe₂)₂ (3) via amine elimination. A cyclopentadiene ligand with two pendant pyrrolyl arms, a mixture of 1,3- and 1,4-{CH₂(2-C₄H₃NH)}₂C₅H₄ (4), undergoes an analogous reaction with Ti(NMe₂)₄ to give [1,3-{CH₂(2-C₄H₃N)}₂(η⁵-C₅H₃)]Ti(NMe₂) (5). Molecular structures of 3 and 5 have been determined by single crystal X-ray diffraction studies.     

Structural Basis of Artemisinin Binding Sites in Serum Albumin with the Combined Use of NMR and Docking Calculations

Artemisinin is known to bind to the main plasma protein carrier serum albumin (SA); however, there are no atomic level structural data regarding its binding mode with serum albumin. Herein, we employed a combined strategy of saturation transfer difference (STD), transfer nuclear Overhauser effect spectroscopy (TR-NOESY), STD–total correlation spectroscopy (STD-TOCSY), and Interligand Noes for PHArmacophore Mapping (INPHARMA) NMR methods and molecular docking calculations to investigate the structural basis of the interaction of artemisinin with human and bovine serum albumin (HSA/BSA). A significant number of inter-ligand NOEs between artemisinin and the drugs warfarin and ibuprofen as well as docking calculations were interpreted in terms of competitive binding modes of artemisinin in the warfarin (FA7) and ibuprofen (FA4) binding sites. STD NMR experiments demonstrate that artemisinin is the main analyte for the interaction of the A. annua extract with BSA. The combined strategy of NMR and docking calculations of the present work could be of general interest in the identification of the molecular basis of the interactions of natural products with their receptors even within a complex crude extract.     

Syntheses, structures, and properties of phenyltrihydroborate complexes of zirconocene and titanocene

The phenyltrihydroborate complexes, Cp₂ZrCl{(μ-H)₂BHPh}, 1, and Cp₂Zr{(μ-H)₂BHPh}₂ · (1/2 toluene), 2, were prepared from the reactions of Cp₂ZrCl₂ with one and two moles of LiBH₃Ph. The Zr-H-B bonds in 2 are stable under vacuum at 100 °C for hours without significant decomposition. An inductive effect has been proposed for this strong interaction. This hydrogen bridge bond can be broken upon reacting with the Lewis base N(C₂H₅)₃ to produce (C₂H₅)₃N · BH₂Ph and the zirconium hydride compound Cp₂ZrH{(μ-H)₂BHPh}, 3. Compound 3 also can be prepared from the reaction of Cp₂ZrHCl with LiBH₃Ph. The reaction of 1 with the Lewis acid B(C₆F₅)₃ is solvent dependent, the metathesis product Cp₂ZrCl{(μ-H)₂B(C₆F₅)₂}, 4, was formed in the toluene solution, whereas the ionic complex [Cp₂ZrCl(OEt₂)][HB(C₆F₅)₃], 5, was isolated from the ether solution. The reaction of titanocene dichloride, Cp₂TiCl₂, with LiBH₃Ph produced a 17-electron, paramagnetic complex, Cp₂Ti{(μ-H)₂BHPh}, 6. Single crystal X-ray structures of 1, 2, 3, 4, 5, and 6 were also determined. A coplanar structure of the four bridge hydrogens in 2 was observed.     

Mononuclear transition metal complexes with sterically hindered carboxylate ligands: Synthesis, structural and spectral properties

The metal coordination geometry in the active site of metalloproteins are very different from the one of small inorganic complexes, due to the inflexibility of the ligand set from amino acid side chains different from freely moving ligand set in synthesis. Using the sterically hindered 2,6-di-(p-fluorophenyl)benzoate(L) ligand, a series of mononuclear Co(II), Ni(II) and Cu(II) complexes of general formula [M(L)₂(Hdmpz)₂] (where, Hdmpz = 3,5-dimethyl pyrazole) have been synthesized and characterized by the variety of spectroscopic methods. A distorted octahedral geometry in case of nickel, tetrahedral geometry for cobalt and square pyramidal in copper was observed in the X-ray studies, which also revealed that the uncoordinated oxygen atom of the carboxylate group forms intramolecular hydrogen bonding with the N-H group of the coordinated 3,5-dimethylpyrazole in case of cobalt and copper.     

Ligand behaviour of P-functionally substituted organotin halides: palladium(II) and platinum(II) complexes with Ph2PCH2CH2SnCl3

The P-functional organotin chloride Ph₂PCH₂CH₂SnCl₃ reacts with [(COD)MCl₂] and trans-[(Et₂S)₂MCl₂] (M=Pd, Pt) in molar ratio 1:1 to the zwitterionic complexes [(COD)M⁺(Cl)(PPh₂CH₂CH₂Sn⁻Cl₄)] (1: M=Pd; 2: M=Pt) and trans-[(Et₂S)₂M⁺(Cl)(PPh₂CH₂CH₂Sn⁻Cl₄)] (3: M=Pd; 4: M=Pt). The same reaction with [(COD)Pd(Cl)Me] yields under transfer of the methyl group from palladium to tin the complex [(COD)M⁺(Cl)(PPh₂CH₂CH₂Sn⁻MeCl₃)] (5) which changes in acetone into the dimeric adduct [Cl₂Pd(PPh₂CH₂CH₂SnMeCl₂·2Me₂CO)]₂ (6). In molar ratio 2:1 Ph₂PCH₂CH₂SnCl₃ reacts with [(COD)MCl₂] to the complexes [Cl₂Pd(PPh₂CH₂CH₂SnCl₃)₂] (7: M=Pd, mixture of cis/trans isomer; 8: M=Pt, cis isomer). In a subsequent reaction 8 is transformed in acetone into the 16-membered heterocyclic complex cis-[Cl₂Pt(PPh₂CH₂CH₂)₂SnCl₂]₂ (9). trans-[(Et₂S)₂PtCl₂] and Ph₂PCH₂CH₂SnCl₃ in molar ratio 1:2 yields the zwitterionic complex [(Et₂S)M⁺(Cl)(PPh₂CH₂CH₂SnCl₃)(PPh₂CH₂CH₂Sn⁻Cl₄)] (10). The results of crystal structure analyses of 1, 3, 6, 9 and of the adduct of the trans-isomer of 7 with acetone (7a) are reported. ³¹P- and ¹¹⁹Sn-NMR data of the complexes are discussed.     

Derivatives of pyrazinecarboxylic acid: 1H, 13C and 15N NMR spectroscopic investigations

NMR spectroscopic studies are undertaken with derivatives of 2‐pyrazinecarboxylic acid. Complete and unambiguous assignment of chemical shifts (¹H, ¹³C, ¹⁵N) and coupling constants (¹H,¹H; ¹³C,¹H; ¹⁵N,¹H) is achieved by combined application of various 1D and 2D NMR spectroscopic techniques. Unequivocal mapping of ¹³C,¹H spin coupling constants is accomplished by 2D (δ,J) long‐range INEPT spectra with selective excitation. Phenomena such as the tautomerism of 3‐hydroxy‐2‐pyrazinecarboxylic acid are discussed. Copyright © 2009 John Wiley & Sons, Ltd.