Configuration-dependent interface charge transfer at a molecule-metal junction

The role of the molecule-metal interface is a key issue in molecular electronics. Interface charge transfer processes for 4-fluorobenzenethiol monolayers with different molecular orientations on Au(111) were studied by resonant photoemission spectroscopy. The electrons excited into the LUMO or LUMO+1 are strongly localized for the molecules standing up on Au(111). In contrast, an ultrafast charge transfer process was observed for the molecules lying down on Au(111). This configuration-dependent ultrafast electron transfer is dominated by an adiabatic mechanism and directly reflects the delocalization of the molecular orbitals for molecules lying down on Au(111). Theoretical calculations confirm that the molecular orbitals indeed experience a localization-delocalization transition resulting from hybridization between the molecular orbitals and metal surface. Such an orientation-dependent transition could be harnessed in molecular devices that switch via charge transfer when the molecular orientation is made to change.     

π-Electron-Assisted Relaxation of Spin Excited States in Cobalt Phthalocyanine Molecules on Au(111) Surface

We present our investigation on the spin relaxation of cobalt phthalocyanine (CoPc) films on Au(111) (CoPc/Au(111)) surface using scanning tunneling microscopy and spectroscopy. The spin relaxation time derived from the linewidth of spin-flip inelastic electron tunneling spectroscopy is quantitatively analyzed according to the Korringa-like formula. We find that although this regime of the spin relaxation time calculation by just considering the exchange interaction between itinerant conduction electrons and localized d-shells (s-d exchange interaction) can successfully reproduce the experimental value of the adsorbed magnetic atom, it fails in our case of CoPc/Au(111). Instead, we can obtain the relaxation time that is in good agreement with the experimental result by considering the fact that the π electrons in CoPc molecules are spin polarized, where the spin polarized π electrons extended at the Pc macrocycle may also scatter the conduction electrons in addition to the localized d spins. Our analyses indicate that the scattering by the π electrons provides an efficient spin relaxation channel in addition to the s-d interaction and thus leads to much short relaxation time in such a kind of molecular system on a metal substrate.     

Molecular orientations and interfacial structure of C60 on Pt(111)

Molecular orientations and assembled structures of C(60) molecules on Pt(111) have been characterized by low-temperature scanning tunneling microscopy for coverage between 0.1 ML and 1.5 ML. At room temperature, C(60) molecules preferentially decorate the steps and nucleate into single layer islands (SLIs) with hexagonal close-packed structures upon increasing coverage. C(60) islands comprise two differently oriented C(60)∕Pt(111)-(√13?×?√13) R13.9° phases, in which five types of molecular orientation of C(60) carbon cage configurations are clearly identified by the high-resolution scanning tunneling microscopy image. Further annealing treatment leads to more uniform molecular orientation without apparent aggregation of C(60) SLIs. As coverage increases above 1 ML, domains corresponding to (2√3?×?2√3) R30° superstructure appear. To explain the above transformation, an interfacial reconstruction model is proposed according to the detailed study of the molecular adsorption structures in different domains.     

Dynamic double lattice of 1-adamantaneselenolate self-assembled monolayers on Au{111}

We report a complex, dynamic double lattice for 1-adamantaneselenolate monolayers on Au{111}. Two lattices coexist, revealing two different binding modes for selenols on gold: molecules at bridge sites have lower conductance than molecules at three-fold hollow sites. The monolayer is dynamic, with molecules switching reversibly between the two site-dependent conductance states. Monolayer dynamics enable adsorbed molecules to reorganize according to the underlying gold electronic structure over long distances, which facilitates emergence of the self-organized rows of dimers. The low-conductance molecules assume a (7 × 7) all-bridge configuration, similar to the analogous 1-adamantanethiolate monolayers on Au{111}. The high-conductance molecules self-organize upon mild annealing into distinctive rows of dimers with long-range order, described by a (6√5 × 6√5)R15° unit cell.     

Electrochemical control of the structure of two-dimensional supramolecular organization consisting of phthalocyanine and porphyrin on a gold single-crystal surface

Two-component adlayers consisting of cobalt(II) phthalocyanine (CoPc) and a metalloporphyrin such as 5,10,15,20-tetraphenyl-21H,23H-porphine copper(II) (CuTPP), 2,3,7,8,12,13,17,18-octaethyl-21H,23H-porphine copper(II) (CuOEP), or 5,10,15,20-tetraphenyl-21H,23H-porphine cobalt(II) (CoTPP) were prepared by immersing either an Au(111) or Au(100) substrate in a benzene solution containing those molecules. The mixed adlayers thus prepared were investigated in 0.1 M HClO4 by cyclic voltammetry (CV) and in situ scanning tunneling microscopy (STM). The composition of the mixed adlayer consisting of CoPc and CuTPP molecules was found to vary with immersion time. CoPc molecules displaced CuTPP molecules during the modification process with increasing immersion time, and the CuTPP molecules were completely displaced by CoPc molecules in the mixed solution after a prolonged modification time, during which the underlying Au(100) substrate underwent phase transition from the reconstructed (hex) lattice to the unreconstructed (1 x 1) lattice. The two-component adlayer of CoPc and CuTPP was found to form a supramolecular adlayer with the constituent molecules arranged alternately on Au(100)-(hex). The striped structure was stable on Au(100)-(hex) at or near the open circuit potential (OCP), whereas the mixed adlayer was disordered on Au(100)-(1 x 1) at potentials more positive than OCP, where the phase transition of the arrangement of underlying Au atoms (i.e., the lifting of reconstruction) was induced electrochemically. A similar two-component supramolecular adlayer consisting of CoPc and CuTPP was formed on Au(111). A highly ordered, compositionally disordered adlayer of CoTPP and CuTPP was formed on Au(100)-(hex), suggesting that the adlayer structure is independent of the coordinated central metal ion for the formation of supramolecular nanostructures composed of those molecules. A supramolecular organization of CoPc and CuOEP was also found on Au(111). The surface mobility and the molecular reorganization of CoPc and CuOEP on Au(111) were tuned by modulation of the electrode potential. It is concluded that molecular assemblies of the two-component structure consisting of phthalocyanine and porphyrin were controlled not only by the crystallographic orientation of Au but also by the modulation of electrochemical potential.     

Coverage dependent photoelectron spectroscopy of CO chemisorption on Cu (111): Evidence for two adsorption sites

The ultraviolet photoelectron spectra (UPS) of CO adsorbed on the (111) face of Cu are found to be dependent on coverage from exposure of 0.3 L up to saturation. At the lowest dose two intense molecular orbitals are observed at binding energies of 8.7 and 11.7 eV (phase I). The intensity of two additional structures at 9.6 and 13.7 eV is quickly enhanced with increasing exposure (phase II), more weakly bound, yielding at saturation coverage the complex four-peak spectra usually reported for CO on Cu. We therefore reassign the levels at 11.7 and 8.7 eV to the 4σ and overlap of (1π + 5σ) molecular orbitals of CO adsorbed on top position and the levels at 13.7 and 9.6 eV to the same for CO adsorbed on bridge position.     

Two-dimensional supramolecular organization of copper octaethylporphyrin and cobalt phthalocyanine on Au(111): molecular assembly control at an electrochemical interface

Mixed adlayers of 2,3,7,8,12,13,17,18-octaethyl-21H,23H-porphine copper(II) (CuOEP) and cobalt(II) phthalocyanine (CoPc) were prepared by immersing Au(111) substrate in a benzene solution containing CuOEP and CoPc molecules, and they were investigated in 0.1 M HClO(4) by cyclic voltammetry (CV) and in-situ scanning tunneling microscopy (STM). The composition of the mixed adlayer consisting of CuOEP and CoPc molecules was found to vary depending on the immersion time. CoPc molecules displaced CuOEP molecules during the modification process with increasing immersion time, and the CuOEP molecules were completely replaced with CoPc molecules in the mixed solution after a long modification time. The two-component adlayer consisting of CuOEP and CoPc, which has a structure with the constituent molecules arranged alternately, was found to form either a p(9 x 3(square root)7R - 40.9 degrees) or a p(9 x 3(square root)7R - 19.1 degrees) structure, each involving two molecules on the Au(111) surface. The surface mobility and the molecular reorganization of CuOEP and CoPc were accelerated by modulation of the electrode potential. Different surface structures were produced at different electrode potentials, and hence potential modulation should allow a precisely controllable phase separation to take place in aqueous HClO(4).     

Kondo effect in single cobalt phthalocyanine molecules adsorbed on Au(111) monoatomic steps

The Kondo effect in single dehydrogenated cobalt phthalocyanine (CoPc) molecules adsorbed on Au(111) monoatomic steps was studied with a low temperature scanning tunneling microscope. The CoPc molecules adsorbed on Au(111) monoatomic steps show two typical configurations, which can be dehydrogenated to reveal Kondo effect. Moreover, the Kondo temperatures (T(K)) measured for different molecules vary in a large range from approximately 150 to approximately 550 K, increasing monotonically with decreasing Co-Au distance. A simple model consisting of a single Co 3d(z) (2) orbital and a Au 6s orbital is considered and gives a qualitative explanation to the dependence. The large variation of T(K) is attributed to the variation of the interaction between the magnetic-active cobalt ion and the Au substrate resulted from different Co-Au distances.     

Scanning tunneling microscopy study of the structure and orbital-mediated tunneling spectra of cobalt(II) phthalocyanine and cobalt(II) tetraphenylporphyrin on au(111): mixed composition films

Binary thin films of cobalt(II) phthalocyanine (CoPc) and cobalt(II) tetraphenylporphyrin (CoTPP) were prepared at submonolayer coverage on Au(111)/mica substrates byvapor deposition. All sample preparation and analysis were done under an ultrahigh vacuum. Scanning tunneling microscopy (STM) constant-current images of CoPc/CoTPP mixtures showed two close-packed surface structures, with different compositional percentages and some disorder. CoPc was also observed exclusively in one-dimensional chains and as single, isolated molecules below 220 K. Occupied and unoccupied orbital energy levels were identified by STM and tunnel-diode-based orbital-mediated tunneling spectroscopy. Occupied energy levels were also confirmed by ultraviolet photoelectron spectroscopy. The transient oxidation of the Co d(z2) orbital is identified in STM dI/dV(V) curves just negative of the 0 V sample bias for both molecules. Nearly identical constant-current contours are observed over the central Co2+ ions of CoTPP and CoPc, indicating that the attenuation of the d(z)2 orbital-mediated tunneling current induced by the structure of TPP relative to Pc is at most a factor of about 10. The orbital-mediated tunneling spectra of CoTPP and CoPc are distinctly different and allow these structurally similar species to be differentially identified.     

Assembly dynamics and detailed structure of 1-propanethiol monolayers on Au(111) surfaces observed real time by in situ STM

1-Propanethiol is chosen as a model alkanethiol to probe detailed mechanisms of the self-assembled monolayer (SAM) formation at aqueous/Au(111) interfaces. The assembly processes, including initial physi- and chemisorption, pit formation, and domain growth, were recorded into movies in real-time with high resolution by in situ scanning tunneling microscopy (STM) under potential control. Two major adsorption steps were disclosed in the propanethiol SAM formation. The first step involves weak interactions accompanied by the lift of the Au(111) surface reconstruction, which depends reversibly on the electrochemical potentials. The second step is chemisorption to form a dense monolayer, accompanied by formation of pits as well as structural changes in the terrace edges. Pits emerged at the stage of the reconstruction lift and increased to a maximum surface coverage of 4.0 +/- 0.4% at the completion of the SAM formation. Well-defined triangular pits in the SAM were found on the large terraces (more than 300 nm wide), whereas few and small pinholes appeared at the terrace edge areas. Smooth edges were converted into saw-like structural features during the SAM formation, primarily along the Au(111) atomic rows. These observations suggest that shrinking and rearrangement of gold atoms are responsible for both formation of the pits and the shape changes of the terrace edges. STM images disclose a (2 square root 3 x 3)R30 degrees periodic lattice within the ordered domains. Along with electrochemical measurements, each lattice unit is assigned to contain four propanethiol molecules exhibiting different electronic contrasts, which might originate in different surface orientations of the adsorbed molecules.     

A density-functional theory study of water on clean and hydrogen preadsorbed Rh(111) surfaces

We study the water bilayer on clean and hydrogen preadsorbed Rh(111) surfaces by means of density-functional theory with the generalized gradient approximation and the van der Waals density functional, to investigate the influence of adsorbed hydrogen on the adsorption state of water. We found that adsorbed hydrogen interacts repulsively with water through its 1b(1) and 4a(1) orbitals. The repulsion dominates at high hydrogen coverage, resulting in a hydrophobic Rh(111)-H surface.     

CoPc adsorption on Cu(111): Origin of the C4 to C2 symmetry reduction

The adsorption of phthalocyanines (Pc) to various surfaces has recently been reported to lead to a lowering of symmetry from C4 to C2 in scanning tunneling microscope (STM) images. Possible origins of the reduced symmetry involve the electronic structure or geometric deformation of the molecules. Here, the origin of the reduction is clarified from a comprehensive theoretical study of CoPc adsorbed on the Cu(111) surface along with the experimental STM data. Total energy calculations using different schemes for the exchange-correlation energy and STM simulations are compared against experimental data. We find that the symmetry reduction is only reproduced when van der Waals corrections are included into the formalism. It is caused by a deformation along the two perpendicular molecular axes, one of them coming closer to the surface by around 0.2 A?. An electronic structure analysis reveals (i) the relevance of the CoPc interaction with the Cu(111) surface state and (ii) that intramolecular features in dI/dV maps clearly discriminate a Co-derived state from the rest of the Pc states.     

Self-assembly of phospholipid molecules at a Au(111) electrode surface

We described the first scanning tunneling microscopy study of spreading unilamellar vesicles of 1,2-dimyristoyl-sn-glycero-3-phosphatidylcholine (DMPC) at a Au(111) electrode surface. At the initial stage of the film formation, the molecular resolution images revealed that DMPC molecules are adsorbed flat with the acyl chains oriented parallel to the surface. The molecules assemble into double rows by aligning the acyl chains in the nearest neighbor direction of the reconstructed Au(111) surface and assuming a 90 +/- 10 degrees angle with respect to line of the molecular row. After approximately 30 min, this film is transformed into a hemimicellar state with long rows characteristic for the formation of hemicylindrical surface micelles. At hydrophilic surfaces such as glass, spreading of vesicles involves adsorption, rupture, and sliding of a single bilayer on a lubricating film of the solvent. We have provided the first evidence that a different mechanism is involved in spreading the vesicles at gold. The molecules released by rupture of vesicles self-assemble into an ordered film, and the assembly is controlled by the chain-substrate interaction.     

Correlation between molecular orbitals and doping dependence of the electrical conductivity in electron-doped metal-phthalocyanine compounds

We have performed a comparative study of the electronic properties of six different electron-doped metal-phthalocyanine (MPc) compounds (ZnPc, CuPc, NiPc, CoPc, FePc, and MnPc), in which the electron density is controlled by means of potassium intercalation. Despite the complexity of these systems, we find that the nature of the underlying molecular orbitals produces observable effects in the doping dependence of the electrical conductivity of the materials. For all the MPc's in which the added electrons are expected to occupy orbitals centered on the ligands (ZnPc, CuPc, and NiPc), the doping dependence of the conductivity has an essentially identical shape. This shape is different from that observed in MPc materials in which electrons are also added to orbitals centered on the metal atom (CoPc, FePc, and MnPc). The observed relation between the macroscopic electronic properties of the MPc compounds and the properties of the molecular orbitals of the constituent molecules clearly indicates the richness of the alkali-doped metal-phthalocyanines as a model class of compounds for the investigation of the electronic properties of molecular systems.     

Chiral morphologies and interfacial electronic structure of naphtho[2,3-a]pyrene on Au(111)

The adsorption of the two-dimensionally chiral naphtho[2,3-a]pyrene molecule has been studied on Au(111). Both structural and electronic properties of the naphtho[2,3-a]pyrene (NP)/Au(111) interface have been measured. Ultraviolet and X-ray photoelectron spectroscopy have been employed to measure the energies of the molecular orbitals of the NP film with respect to the gold Fermi level. A Schottky junction with a large interface dipole (0.99 eV) is formed between Au(111) and NP. Temperature-programmed desorption was used to determine that adsorbed NP has a binding energy of 102.2 kJ/mol. Chiral domains have been observed with scanning tunneling microscopy due to the spontaneous phase separation of the 2-D enantiomers. Two distinct structural polymorphs have been observed, one of which has homochiral paired molecular rows. Models of the 2D structure are proposed that are in excellent agreement with experimental measurements.     

Adsorption geometry of 4-picoline chemisorbed on the Cu(110) surface: a study of forces controlling molecular self-assembly

The adsorption of 4-picoline (4-methylpyridine) on the Cu(110) surface has been studied with time-of-flight electron stimulated desorption ion angular distribution (TOF-ESDIAD) and other methods. Using deuterium labeling in the methyl group and hydrogen labeling on the aromatic ring, it has been possible to separately monitor by TOF-ESDIAD the C-D bond directions and the C-H bond directions in the adsorbed molecule. These triangulation measurements have led to a detailed understanding of the conformation of the adsorbed molecule relative to the Cu(110) crystal lattice, allowing one to witness changes in the molecular conformation as adsorbate-adsorbate interactional effects take place for increasing coverages. At low coverages, the molecule adsorbs by the N atom at an atop Cu site with the aromatic ring parallel to the <001> azimuth and with the molecular axis inclined 33 (+/- 5) degrees along the <001> azimuth. As rows of 4-picoline molecules form long range ordered chain structures oriented along the <112> azimuth, the aromatic ring twists 29 degrees about the inclined molecular axis as a result of forces between the adsorbate molecules. The initial tilting of the molecular axis at low coverage is likely due to the interaction of the positive-outward dipole with its image in the substrate. The ring twist may result from dipoleminus signdipole forces between the adsorbate molecules in the rows formed tending to form nested parallel pyridine rings. These studies are the first to apply the TOF-ESDIAD method for the measurement of the direction of chemical bonds at more than one molecular location within an adsorbed molecule and the new method is named electron stimulated desorption-molecular triangulation (ESD-MT). The results obtained give information of importance in understanding the factors which control conformational effects during the molecular self-assembly of complex adsorbed molecules on surfaces.     

Interaction of coadsorbed CH3Cl and D2O layers on Pd(111) studied by sum frequency generation

Adsorption of methyl chloride and coadsorption of CH3Cl and D2O on Pd(111) surfaces at T=100 K have been studied under ultrahigh-vacuum conditions using femtosecond sum frequency generation (SFG) spectroscopy in the spectral regions of CH and OD bands. On the bare Pd(111) substrate, the CH3Cl coverage dependence of the resonant SFG signal is consistent with a progressive molecular rearrangement starting at half saturation followed by the growth of two ordered monolayers in which the molecular axes are perpendicular to the surface. When CH3Cl is adsorbed on top of predeposited D2O on Pd(111), the SFG signals as a function of the CH3Cl exposure indicate that methyl chloride is adsorbed onto D2O through hydrogen bonding. On the contrary when the adsorption order is reversed the strong decrease of the CH3 signal as a function of the D2O exposure is explained by assuming that water molecules penetrate inside the CH3Cl layers, leading to the formation of disordered CH3Cl clusters. In all cases a nonresonant contribution due to molecular adsorption is observed and it shows a dependence upon surface structure and coverage significantly different from that of the resonant vibrational bands.     

In situ scanning tunneling microscopy of 1,6-hexanedithiol, 1,9-nonanedithiol, 1,2-benzenedithiol, and 1,3-benzenedithiol adsorbed on pt(111) electrodes

Cyclic voltammetry (CV) and in situ scanning tunneling microscopy (STM) were used to examine four dithiol molecules, including 1,6-hexanedithiol, 1,9-nonanedithiol, 1,2-benzenedithiol, and 1,3-benzenedithiol, adsorbed on well-ordered Pt(111) electrodes in 0.1 M HClO(4). The open-circuit potential (OCP) of Pt(111) electrodes decreased substantially from 0.95 to 0.3 V (versus reversible hydrogen electrode) upon the adsorption of dithol molecules, which indicates that these adsorbates injected electrons into the Pt electrode. For all dithiol molecules, ordered adlattices of p(2 x 2) and (square root 3 x square root 3)R30 degrees were formed when the dosing concentration was lower than 150 microM and the potential of Pt(111) was more negative than 0.5 V. Raising the potential of Pt(111) from 0.1 to 0.4 V or more positive values could transform p(2 x 2) to (square root 3 x square root 3)R30 degrees before it turned disarray. The insensitivity of the structure of dithiol adlayers with their chemical structures was explained by upright molecular orientation with the formation of one Pt-S bond per dithiol molecule. This molecular orientation was independent of the coverage of dithiol molecules, as nucleation seeds produced at the beginning of adsorption were also constructed with p(2 x 2). The triangular-shaped STM molecular resolution suggested 3-fold binding of sulfur headgroup on Pt(111). All dithiols were adsorbed so strongly on Pt(111) electrodes that switching the potential negatively to the onset of hydrogen evolution in 0.1 M HClO(4) or water reduction in 1 M KOH could not displace dithiol admolecules.     

Low-temperature mobility and structure formation of a prochiral aromatic thiol (2,5-dichlorothiophenol) on Cu(111)

We present a low-temperature scanning tunneling microscopy study of increasing coverages of 2,5-dichlorothiophenol, an asymmetrically halo-substituted aromatic thiol, on Cu(111). At low coverage, deprotonation of the thiol occurs spontaneously upon adsorption at 80 K. Albeit the low deposition temperature, we find the formation of adsorbate islands at low coverage, which coalesce into a well-ordered film of horizontally adsorbed molecules at increasing coverage. This behavior indicates (i) significant mobility of the thiols on Cu(111) even at low temperatures and (ii) attractive adsorbate-adsorbate interactions. At higher coverages intermolecular interactions prevent long-range diffusion of adsorbates and thermal activation of the S-H bond becomes necessary. A close analysis of the molecular films reveals chiral recognition between neighboring molecules, which leads to the formation of enantiopure areas on the surface. Upright orientation of individual molecules starts at the boundaries between such phases and can be induced by scanning tunneling microscopy.     

Scanning tunneling microscope imaging of (CH3S)2 on Cu(111)

Scanning tunneling microscope (STM) images of isolated molecules of dimethyl disulfide, (CH(3)S)(2), adsorbed on the Cu(111) surface were successfully obtained at a sample temperature of 4.7 K. A (CH(3)S)(2) molecule appears as an elliptic protrusion in the STM images. From density functional theory calculation, it was suggested that the bright part in the protrusion corresponds to the molecular orbital which is widely spread around H atoms in each CH(3) group in the (CH(3)S)(2) molecule. The STM images revealed that the molecules have a total of six equivalent adsorption orientations on Cu(111), which are given by the combination of three equivalent adsorption sites and two conformational isomers for each adsorption site.