Supramolecular self-assembling properties of membrane-spanning archaeal tetraether glycolipid analogues

The self-assembling properties of a new series of archaeal tetraether glycolipid analogues 1-6 that are characterized by a bipolar architecture with two similar or different glycosidic and/or phosphate polar heads and a lipid core possessing a cyclopentane unit and/or branched chains were studied by means of differential scanning calorimetry, optical microscopy, X-ray scattering, freeze-fracture electron microscopy and dynamic light scattering. Unsymmetrical phosphate derivatives 1 and 2 spontaneously formed thermostable multilamellar and unilamellar vesicles in which most of the bipolar lipids adopted a trans-membrane conformation, as revealed by freeze-fracture electron microscopy. Supramolecular aggregates of neutral glycolipids 3-6 were found to depend on both the saccharidic polar heads and the chain composition. The presence of one glycosidic residue with rather marked hydrophilic properties, such as the lactosyl moiety, was required to allow the formation of multilamellar vesicles. Surprisingly, the introduction of a cyclopentane unit in the bridging chain was able to induce an apparent two-by-two membrane association: this unusual behaviour might be the result of unsymmetrical interfacial properties of the lipid layer caused by the presence of the cyclopentane unit.     

Biosynthetic studies on the cyclopentane ring formation of allosamizoline, an aminocyclitol component of the chitinase inhibitor allosamidin

Allosamizoline (1) is an aminocyclitol component of allosamidin, a Streptomyces metabolite, and has a cyclopentane ring originated from D-glucosamine. Biosynthesis of the cyclopentane ring was studied by feeding experiments with a variety of deuterium-labeled glucosamine and glucose. In the feeding experiments with [3-(2)H]- and [4-(2)H]-D-glucosamine and [1-(2)H]-D-glucose, deuterium was incorporated into C-3, C-4, and C-1 of 1, respectively. On the other hand, feeding experiments with [5-(2)H]- and [6,6-(2)H(2)]-D-glucosamine showed that deuterium on C-5 and one of the two deuterium atoms on C-6 of glucosamine were lost during the cyclopentane ring formation of 1. In the feeding experiments with (6R)- and (6S)-[6-(2)H(1)]-D-glucose, the (6R)-deuterium of glucose was incorporated into the proS position on C-6 of 1, but the (6S)-deuterium of glucose was not incorporated into 1. These results suggested that an intermediate with a 6-aldehyde group is involved in the biosynthesis of the cyclopentane ring moiety of 1 and overall inversion of stereochemistry of the C-6 methylene group occurred by stereospecific oxidation and reduction on C-6 during the formation of 1. The 6-aldehyde intermediate may play a key role in the biosynthetic step(s) of cyclization to form the cyclopentane ring and/or deoxygenation at C-5.     

New cationic olefin cyclization-pinacol reactions. Ring-expanding cyclopentane annulations that directly install useful functionality in the cyclopentane ring

Two new tandem cationic olefin cyclization-pinacol reactions that provide cyclopentane-fused cycloalkanone products are described. Treatment of cis-1-[2-alkenyl-2-(triethylsiloxy)cycloalkyl]but-3-en-2-ol derivatives 21-24 with triflic anhydride at -78 degrees C affords cycloalkanones 31-34 in 54-90% yields with diastereoselectivities of typically >20:1. In this unusual transformation, the starting cycloalkanone is ring-expanded and fused to a 2-alkenylcyclopentane fragment. Reaction of cis-(2-siloxy-2-alkenylcycloalkyl)pyrrolidin-1-ylethanones 15-17 with triflic anhydride and 2,6-di-tert-butyl-4-methylpyridine (DTBMP) at -20 to +65 degrees C followed by hydrolysis of the intermediate iminium salts 64 with aqueous KHCO(3) affords cycloalkanediones 46-48 in moderate yield and high diastereoselectivity (>20:1). These are the first examples of ring-expanding cyclopentane annulations that directly introduce a carbon side chain or carbonyl functionality at the cyclopentane C2 position. The high diastereoselectivities observed in these reactions are believed to arise from reaction through highly organized cyclic transition states.     

Ring Contraction Through Epoxide Rearrangement: A Formal Synthesis of Capsorubin

An eight-step synthesis of the cyclopentane keto-alcohol 2, which has previously been converted in one step into the carotenoid pigment capsorubin (1), is described. The key step in our synthesis is a stereospecific epoxide rearrangement with ring contraction, thus producing the cyclopentane ring from an epoxide of a cyclohexene.     

Chiral Cyclopentane-Based Mimics of D-myo-Inositol 1,4,5-Trisphosphate from D-Glucose

Two routes from D-glucose to chiral, ring-contracted analogs of the second messenger D-myo-inositol 1,4,5-trisphosphate are described. Methyl alpha-D-glucopyranoside was converted by an improved procedure into methyl 4,6-O-(p-methoxybenzylidene)-alpha-D-glucopyranoside (6) and thence into methyl 2-O-benzyl-3,4-bis-O-(p-methoxybenzyl)-alpha-D-gluco-hexodialdopyranoside (1,5) (14) in four steps. In the first ring-contraction method 14 was converted into methyl 2-O-benzyl-6,7-dideoxy-3,4-bis-O-(p-methoxybenzyl)-alpha-D-gluco-hept-6-enopyranoside (1,5) (15), which on sequential treatment with Cp(2)Zr(n-Bu)(2) followed by BF(3).Et(2)O afforded a mixture of (1R,2S,3S,4R,5S)-3-(benzyloxy)-4-hydroxy-1,2-bis[(p-methoxybenzyl)oxy]-5-vinylcyclopentane (16) and its 4S,5R diastereoisomer 17. Removal of the p-methoxybenzyl groups of 16 and subsequent phosphorylation and deprotection afforded the first target compound, (1R,2R,3S,4R,5S)-3-hydroxy-1,2,4-tris(phosphonooxy)-5-vinylcyclopentane (3). In the second route, intermediate 14 was subjected to SmI(2)-mediated ring contraction to give (1R,2S,3S,4R,5S)-3-(benzyloxy)-4-hydroxy-5-(hydroxymethyl)-1,2-bis[(p-methoxybenzyl)oxy]cyclopentane (20). Benzylation of 20 provided (1R,2S,3S,4R,5S)-3-(benzyloxy)-6-[(benzyloxy)methyl]-4-hydroxy-1,2-bis[(p-methoxybenzyl)oxy]cyclopentane (22) and (1R,2S,3S,4R,5S)-3,4-bis(benzyloxy)-5-(hydroxymethyl)-1,2-bis[(p-methoxybenzyl)oxy]cyclopentane (21), which were elaborated to the target trisphosphates (1R,2R,3S,4R,5S)-3-hydroxy-5-(hydroxymethyl)-1,2,4-tris(phosphonooxy)cyclopentane (4) and (1R,2S,3R,4R,5S)-1,2-dihydroxy-3,4-bis(phosphonooxy)-5-[(phosphonooxy)methyl]cyclopentane (5), respectively. Both 3 and 4 mobilized intracellular Ca(2+), but 4 was only a few fold less potent than D-myo-inositol 1,4,5-trisphosphate, demonstrating that effective mimics can be designed that do not bear a six-membered ring.     

Molecular dynamics simulation study on the interaction of KRN 7000 and three analogues with human CD1d

Many analogues of KRN 7000, a synthetic glycolipid (α-galactosylceramide) exhibiting immuno-stimulatory activity and antitumor properties, were previously synthesized and tested in order to understand the reasons for the resulting biological activity and Th1/Th2 cytokine profile. Principles have been established for the interaction of such glycolipids with the human CD1d molecule but the exact mechanism by which different ligands with the same polar head elicit distinct biological responses remains unclear. Based on these experiments and on the available crystal structures, protein-ligand interactions are explored using molecular dynamics simulations. Hydrogen bond interactions are examined with regard to the polar group orientation. The influence of modulations on the dynamic behavior of the CD1d-glycolipid complex is addressed. Overall, our data support the mechanism by which the shortening of the α-GalCer sphingosine chain causes a significant twist of the CD1d α1 helix structure from residue Phe84 that affects the position of CD1d residues involved in the TCR recognition.     

2,2-disubstituierte cyclopentan-1,3-dione—2: Untersuchung der regioselektivität von alkylierungs-reaktionen an 2-methyl-cyclopentan-1,3-dion

The regioselectivity of the alkylation of alkali metal salts of 2 - methyl - cyclopentane - 1,3 - dione with alkyl halides depends significantly on the structure of the alkylating reagent and the type of solvent used in the reaction. Unsubstituted saturated primary alkyl halides with the exception of methyl iodide preferentially yield products of O-alkylation. Alkyl halides with an sp²- or sp-hybridized carbon atom in a β-position preferentially yield products of C-alkylation. Dipolar aprotic solvents favour O-alkylation; water favours C-alkylation. On the basis of these results procedures for the prepartion of 2-allyl-2-methyl-, 2-allyl-2-ethyl-, 2-methyl-2-propargyl- and 2 - benzyl - 2 - mehtyl - cyclopentane - 1,3 - dione have been developed. The alkylation of 2 - methyl - cyclopentane - 1,3 - dione with methyl bromoacetate was also intensively investigated.     

Synthesis of cis,cis,cis-1-alkylidene-2,3,4,5-tetrakis(diphenylphosphinomethyl)cyclopentanes

A new strategy to prepare tetradentate or pentadentate diphenylphosphine ligands has been explored from Diels-Alder adducts of fulvenes and maleic anhydride. A tetradentate phosphine ligand, bearing a side chain allowing the formation of a bond with polystyrene resin, has been prepared in seven steps from cyclopentadiene. The cis,cis,cis-1-cyclohexylidene-2,3,4,5-tetrakis(diphenylphosphinomethyl)cyclopentane (Cyclo-Tedicyp) in combination with [PdCl(C₃H₅)]₂ led to an efficient catalyst for the Heck, Suzuki and Sonogashira coupling reactions.     

Isoquinoline derivatives

6,7-Dimethoxy-1,2,3,4-tetrahydroisoquinoline-4-spirocyclopentane was obtained by condensation of 3,4-dimethoxyphenyl-1-(aminomethyl)cyclopentane with formalin. The corresponding amides, which were reduced to tertiary amines, were synthesized by reaction of the latter with the acid chlorides of substituted benzoic and phenylacetic acids. Substituted dibenzo[a,-g]quinolizines, isoindolo[1,2-a]isoquinolines, and 1-(3,4-dimethoxyphenyl)-1-[(6,7-dimethoxy-1, 2,3,4-tetrahydro-2-isoquinolinyl)methyl]cyclopentane were synthesized, respectively, by condensation of 1-aryl (or aralkyl)-6,7-dimethoxy-1,2,3,4-tetrahydroisoquinoline-4-spirocyclopentanes and their open analog -1-(3,4-dimethoxyphenyl)-1-(3,4-dimethoxyphenylethylaminomethyl)cyclopentane — with formalin.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 5, pp. 679–682, May, 1973.     

Simultaneous wide‐angle X‐ray diffraction and differential scanning calorimetry analysis of the melting and recrystallization behavior of polyethylene and isotactic polypropylene containing cyclopentane units in the main chain

The melting and crystallization behavior of polyethylene and isotactic polypropylene containing 1,2‐ or 1,3‐disubstituted cyclopentane units in the main chain has been studied with simultaneous wide‐angle X‐ray diffraction (WAXD) and differential scanning calorimetry. For the ethylene‐based copolymers, the position of a reflection peak in the WAXD patterns shifts to a low angle with the increasing acquired temperature. The temperature dependence on the axial length of the crystal lattice is more marked in the copolymers forming orthorhombic crystals (containing 1,2‐cyclopentane or 5.6 mol % 1,3‐cyclopentane units) than in those forming hexagonal crystals (containing 8.1 mol % 1,3‐cyclopentane units). For the isotactic propylene‐based copolymers, the position of the reflection peaks in the WAXD patterns is independent of the acquired temperature. The proportion of the γ form in the copolymer containing the 1,2‐cyclopentane units is higher than that in the copolymers containing the 1,3‐cyclopentane units. © 2004 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 42: 1457–1465, 2004     

Synthesis and Crystal Structure of 1,3-Trans-1,4-cis- 3,4-di(4-bromophenyl)-1',2',3'-trihydro-1-hydroxy- benzo[g]bicyclo[3.3]octane-2-spiro-2'-indene-1'-one

1 INTRODUCTION Low-valent titanium reagents have exceedinglyhigh abilities to promote reductive coupling of car-bonyl compounds and they are attracting increasinginterest in organic synthesis[1]. Many other func-tional groups can also be coupled[2~8]. Recently, wehave reported some intermolecular reductive cou-pling reactions[9~12] and some new intramolecular re-ductive coupling reactions[13~16] induced by low-va-lent titanium reagents. The spiro[4.4]nonane skeleton has been found inmany…     

Threshold effects on the lectin-mediated aggregation of synthetic glycolipid-containing liposomes

Cholesterol analogs containing sugar residues linked by spacer groups to the cholesterol O can be incorporated into egg yolk lecithin small unilamellar liposomes. The synthetic glycolipid analogs distribute evenly on both sides of the bilayer. These liposomes are aggregated by the appropriate lectin. For example, when the sugar residue is a beta-galactoside the liposomes are aggregated by ricin and when it is an alpha-mannoside they are aggregated by Con A. The lectin-mediated aggregation of these liposomes is reversed by the addition of the appropriate sugar. The rates but not the extents of aggregation of these liposomes are highly sensitive to the amount of glycolipid incorporated. Below approximately 5% glycolipid incorporation the rate of the lectin-mediated aggregation of these liposomes is exceedingly slow, whereas above this level rapid aggregation proceeds. At all concentrations studied the synthetic glycolipids are incorporated in a unimodal fashion so that the observed threshold effects cannot be based on possible differences in the manner in which the glycolipids are incorporated at different concentrations. This conclusion is based on 1) studies with galactose oxidase that show that the percentage of galactose oxidation in a liposome prepared from a galactosyl-containing glycolipid is independent of glycolipid concentration, and 2) studies on the aggregation of liposomes containing mixed glycolipids in which the glycolipids are shown to behave independently. The importance of a critical density of membrane-bound receptors in order for aggregation to occur is discussed.     

Reaction of methyl 1-bromocyclopentane- and -cyclohexanecarboxylates with zinc and 2-arylmethylideneindan-1,3-diones

Methyl 1-bromocyclopentanecarboxylate and methyl 1-bromocyclohexanecarboxylate reacted with zinc and 2-arylmethylideneindan-1,3-diones to give methyl-1-[(aryl)(1,3-dioxo-2,3-dihydro-1H-inden-2-yl)-methyl]cyclopentane(or cyclohexane)carboxylates and 4′-aryl-2′H-spiro[cyclopentane(or cyclohexane)-1,3′-indeno[ 1,2-b]pyran]-2′,5′(4′H)-diones.     

Vibrational spectra and structure of cyclopentane and its isotopomers

The infrared and Raman spectra of vapor, liquid, and solid state cyclopentane and its d(1), 1,1-d(2), 1,1,2,2,3,3-d(6), and d(10) isotopomers have been recorded and analyzed. The experimental work was complemented by ab initio and density functional theory (DFT) calculations. The computations confirm that the two conformational forms of cyclopentane are the twist (C(2)) and bent (C(s)) structures and that they differ very little in energy, less than about 10 cm(-1) (0.1 kJ/mol). The bending angle for the C(s) form is 41.5° and the dihedral angle of twisting is 43.2° for the C(2) form. A reliable and complete vibrational assignment for each of the isotopomers has been achieved for the first time, and these agree very well with the DFT (B3LYP/cc-pVTZ) computations. The ab initio CCSD/cc-pVTZ calculations predict a barrier to planarity of 1887 cm(-1), which is in excellent agreement with the experimental value of 1808 cm(-1).     

Synthesis, inhibitory effects on nitric oxide and structure-activity relationships of a glycosphingolipid from the marine sponge Aplysinella rhax and its analogues

The novel glycosphingolipid, β-D-GalNAcp(1-->4)[α-D-Fucp(1-->3)]-β-D-GlcNAcp(1-->)Cer (A), isolated from the marine sponge Aplysinella rhax has a unique structure, with D-fucose and N-acetyl-D-galactosamine moieties attached to a reducing-end N-acetyl-D-glucosamine through an α1-->3 and β1-->4 linkage, respectively. We synthesized glycolipid 1 and some non-natural di- and trisaccharide analogues 2-6 containing a D-fucose residue. Among these compounds, the natural type showed the most potent nitric oxide (NO) production inhibitory activity against LPS-induced J774.1 cells. Our results indicate that both the presence of a D-Fucα1-3GlcNAc-linkage and the ceramide aglycon portion are crucial for optimal NO inhibition.     

Synthesis of the core structure of the lipoteichoic acid of Streptococcus pneumoniae

Streptococcus pneumoniae LTA is a highly complex glycophospholipid that consists of nine carbohydrate residues: three glucose, two galactosamine and two 2‐acetamino‐4‐amino‐2,4,6‐trideoxygalactose (AATDgal) residues that are each differently linked, one ribitol and one diacylated glycerol (DAG) residue. Suitable building blocks for the glucose and the AATDgal residues were designed and their synthesis is described in this paper. These building blocks permitted the successful synthesis of the core structure Glcβ(1‐3)AATDgalβ(1‐3)Glcα(1‐O)DAG in a suitably protected form for further chain extension ( 1 b , 1 c ) and as unprotected glycolipid ( 1 a ) that was employed in biological studies. These studies revealed that 1 a as well as 1 lead to interleukin‐8 release, however not via TLR2 or TLR4 as receptor.     

1-己烯热裂解基元反应选择性分析

1-己烯在873～973 K温度区间热裂解转化反应经历自由基链式反应机理, 主要产物包括C₁~C₃烷烃、C₂~C₄烯烃、丁二烯、环戊烷、环戊烯、焦炭和氢气. 各种产物的生成涉及不同的基元反应途径, 并具有不同的基元反应或然率(Reaction path probability, RPP). 提高反应温度有利于反应物分子的热均裂(链引发)和焦炭生成反应. 随着反应温度从873 K提高到973 K, 标志链式反应特征的动力学链长(KCL)从5.86缩短为5.19.     

Synthesis of polyolefins with unique properties by using metallocene-type catalysts

Copolymerization of ethylene and 1,5-hexadiene (HD) by zirconocene catalysts proceeded via cyclization-addition mechanism to form 1,3-didsubstituted cyclopentane structure in the polyethylene chain. The 1,3-cyclopentane structure was found to be taken in the crystalline structure of polyethylene (isomorphism) by partially chainging the trans zigzag chain into gauche conformation, thereby, inducing a transformation of orthorhombic crystal to pseudohexagonal crystal. Copolymerization of ethylene and cyclopentene (CPE) by zirconocene catalysts yielded copolymers having 1,2-disubstituted cyclopentane structure in the polyethylene chain. The 1,2-cyclopentane structure was not taken into the crystalline structure of polyethylene. The melting point (T_m) and the crystallinity (X_c) of polyethylene decreased by copolymerization of HD or CPE, and the T_m- and X_c-decreasing effect of CPE was stronger than HD. For copolymers of propylene and HD or CPE obtained with isospecific zirconocene catalyst, the isomorphism was not ovserved.     

Synthesis of Non-natural Xyloglucans by Polycondensation of 4,6-Dimethoxy-1,3,5-triazin-2-yl Oligosaccharide Monomers Catalyzed by Endo-β-1,4-glucanase

Summary: A cellotetraose-backboned hepta-saccharide (XXXG) (a capital X represents a glucopyranose residue that is substituted with a xylopyranose through an α-1,6 glycosidic bond, and a capital G represents a non-substituted glucopyranose residue) and a nona-saccharide (XLLG) (a capital L represents a glucopyranose residue that is substituted with a galactopyranoseβ(1-2)xylopyranose through an α-1,6 glycosidic bond) have directly been converted to the corresponding 4,6-dimethoxy-1,3,5-triazin-2-yl derivatives (DMT-β-XXXG 1 and DMT-β-XLLG 2 , respectively) by the action of 4-(4,6-dimethoxy-1,3,5-triazin-2-yl)-4-methyl morpholinium chloride (DMT-MM). The selective nucleophilic attack of the anomeric hydroxyl group to DMT-MM has been achieved in water without using any protection of the hydroxyl groups. The resulting activated oligosaccharide derivatives ( 1 and 2 ) were found to polymerize catalyzed by an endo-β-1,4-glucanase as catalyst. The polymerization took place in a complete regio- and stereo-selective manner, affording non-natural polysaccharides having a XXXG-repeating unit and a XLLG-repeating unit, respectively, in the main chain. It is extremely difficult to construct such definite repeating structures via the conventional synthetic routes including protection-deprotection procedures.     

13C and 1H NMR analysis of structural defects in PVC: Application to the production of defects at various polymerization stages

High resolution ¹H and ¹³C NMR data were obtained on PVC and PVC reduced with Bu₃SnH. The reduction is never complete and CH₂Cl groups preferentially remain. It causes almost complete formation of cyclopentane structures from both internal and chain end unsaturation. ¹H NMR gives total unsaturation as well as chain end unsaturation except if there are interferences with initiator residues; in that case, its combination with ¹³ C NMR of reduced PVC gives the chain end unsaturation. By the last method short branches and long ends are determined. Residual primary chlorine in all kinds of branches (methyl, ethyl, butyl, long ends) is taken into account. Long end contents are to be corrected (factor around 1.5), due to incomplete relaxation in standard analysis conditions. ¹H NMR of reduced PVC can be used to get the total non-reduced structures, both -CH₂Cl and -CHCl-. PVC was prepared by suspension or solution (trichlorobenzene) polymerization at 55° C, using dicetyl peroxydicarbonate as an initiator. The initiator residue content is higher in suspension PVC at very low conversion, and then levels off at a low value; in solution polymerization, it chiefly depends on the monomer/initiator ratio. At low conversion, more chain end and less short branches are present in suspension polymerization. Otherwise, only the butyl branch content shows a definite trend to increase with conversion. In solution polymerization, the number of defects is chiefly dependent on the initial monomer concentration; it is generally much higher than in suspension, except for the chloromethyl branches where both processes give about the same results.