Multiferroic Domain Boundaries as Active Memory Devices: Trajectories Towards Domain Boundary Engineering

Twin boundaries in ferroelastics and curved interfaces between crystalline and amorphous zircon can, in principle, act as multiferroic structural elements and lead the way to the discovery of novel multiferroic devices which are based on structurally heterogeneous materials. While this paradigm has not yet been explored in full, this review shows that physical and chemical properties can vary dramatically inside twin boundaries and interfaces. Properties that have been already been explored include electric dipoles in a non‐polar matrix, the appearance of superconductivity in twin boundaries and the catalytic reaction of hydrous species in interfaces of radiation damaged material. Some of the fundamental physical and chemical properties of twin boundaries and related interfaces are described and possible applications are outlined.     

Boundary Effects in the Hexagonal Packing of Rod-Like Molecules Inside a Right Circular Cylindrical Domain. III. The Case of Arbitrarily Oriented Spherocylindrical Molecules

We study the organization of spherocylindrical molecules inside a freely rotating right circular cylindrical domain at the gas/liquid interface. The analysis is made under the assumption that the molecules are rigid and close packed, and that they are oriented parallel to each other. The direction and angle of their common orientation are completely arbitrary. We obtain exact analytic expressions for the lattice of molecular centers and its boundaries as a function of molecular dimensions, molecular orientation, and domain size. As a first application, we derive the number of molecules in a domain, and the packing fraction. The results obtained are essential when attempting to analytically model a Langmuir film where the global order of the film is less than the local order of the domains.     

Structural properties of opals grown with vertical controlled drying

We have grown thin opals of self-assembled silica colloids by the well-known vertically controlled drying method. The volume fraction at the start of the growth and the temperature were systematically varied. We have quantitatively characterized the lateral domain sizes by scanning electron microscopy. The sample thickness as a function of position was obtained from Fabry-Pérot fringes measured in optical reflectivity. We observe that the sample thickness strongly increases from top to bottom, independent of temperature, in agreement with a model that we propose. The inhomogeneity in thickness contrasts with earlier reports. The lateral domain shapes of the single-crystal domains are found to vary from irregular near the top to rectangular near the bottom. A surprising observation is that, grosso modo, the lateral domain extents increase linearly with thickness (i.e., thin crystals are small, and thick crystals are large). This behavior agrees qualitatively with results on completely different colloids such as disordered slurries. The consequence of our results for optical applications, including photonic crystals, is that unwanted scattering due to grain boundaries is reduced for large domains that are thick. Conversely, thin crystals will scatter relatively strongly from grain boundaries.     

Domain shapes, coarsening, and random patterns in ternary membranes

A number of morphological and statistical aspects of domain formation in singly and doubly supported ternary membranes have been investigated. Such ternary membranes produce macroscopic phase separation in two fluid phases and are widely used as raft models. We find that membrane interactions with the support surface can have a critical influence on the domain shapes if measures are not taken to screen these interactions. Combined AFM and fluorescence microscopy demonstrate small (500 nm) irregular domains and incomplete formation of much larger (5 microm) round domains. These kinetically trapped structures are the result of interactions between the membrane and the support surface, and they can be effectively removed by employing doubly supported membranes under physiological salt concentrations. These decoupled supported membranes display macroscopic round domains that are easily perturbed by fluid shear flow. The system allows a quantitative characterization of domain coarsening upon being cooled into the coexistence region. We determine the domain growth exponent alpha = 0.31, which is in close agreement with the theoretical value of 1/3. Analysis of the spatial domain pattern in terms of Voronoi polygons demonstrates a close similarity to equilibrated cellular structures with a maximized configurational entropy.     

Domain boundary prediction based on profile domain linker propensity index

Successful prediction of protein domain boundaries provides valuable information not only for the computational structure prediction of multi-domain proteins but also for the experimental structure determination. In this work, a novel index at the profile level is presented, namely, the profile domain linker propensity index (PDLI), which uses the evolutionary information of profiles for domain linker prediction. The frequency profiles are directly calculated from the multiple sequence alignments outputted by PSI-BLAST and converted into binary profiles with a probability threshold. PDLI is then obtained by the frequencies of binary profiles in domain linkers as compared to those in domains. A smooth and normalized numeric profile is generated for any amino acid sequences from which the domain linkers can be predicted. Testing on the Structural Classification of Proteins (SCOP) database and CASP6 targets shows that PDLI outperforms other indexes at the amino acid level.     

Formation of large PEE domains in PEE212-PEO112 diblock copolymer monolayers: shift of the PEO-desorption transition

PEE212-PEO112 diblock copolymer monolayers are studied at the air/water interface. At large molecular areas, with X-ray reflectivity, PEE domains are observed, which are partly immersed into the water. The domain thickness increases on compression (28 to 40 A). With off-specular X-ray reflectivity, an average domain radius of 750 A is found, but there are also smaller domains. Due to these space constraints, most PEO blocks form a brush beneath the PEE domains. Only a few PEO blocks form a corona surrounding the domains and adsorb flatly onto the air/water interface. The PEO desorption transition is observed at the typical pressure of 9 mN/m, when the flatly adsorbed PEO is compressed at a domain fraction of 95%. It occurs at 6 A2/EO monomer, about half the value found for lipopolymers or diblock copolymers with NPEE approximately NPEO or NPEE < NPEO. Apparently, the thickness of the PEE domains is determined by the forces from the two interfaces, not by the PEO block, for which flat adsorption beneath the domain would be more favorable instead of formation of a PEO brush.     

Janus cylinders at liquid-liquid interfaces

We describe the first study on the self-assembly behavior of Janus cylinders at liquid/liquid interfaces. The Janus cylinders are characterized by a phase separation along the major axis into two hemicylinders of different wettability. The pendant drop technique and microscopic imaging were used to characterize the adsorption behavior and self-assembly of Janus cylinders at perfluorinated oil/dioxane and perfluorinated oil/dimethyl sulfoxide interfaces. According to the evolution of the interfacial tension and a series of TEM images taken during the cylinder adsorption, we will specify the characteristics of early to late stages of the Janus cylinder adsorption at a liquid-liquid interface and discuss the effect of Janus cylinder length and their concentration. We also establish that the broken symmetry of the corona leads to significantly higher interfacial activity as compared to homogeneous core-shell cylinders. The adsorption is characterized by three different adsorption stages: first, free diffusion to the interface, followed by continuous adsorption of cylinders including ordering and domain formation and, finally, additional packing with a rearrangement of domains and formation of a loose multilayer system.     

Mechanical properties and structure of particle coated interfaces: influence of particle size and bidisperse 2D suspensions

We report surface pressure-area (Pi-A) isotherms of bidisperse mixtures of anionic polystyrene latex particles at a water/n-decane interface as well as optical photographs of the interface for various compressions and mixture ratios. In the case of mixtures of 3 and 5 mum particles, we observe crystalline layers at high or low concentration ratios, where the "impurity" particles concentrate at the grain boundaries of the crystalline structure. At intermediate ratios, the layers become highly disordered. However, in both cases, we show that the shape of the isotherms remains unchanged. In the case of the mixtures of 9 mum particles with either 3 or 5 mum particles, the smaller particles aggregate around the larger particles through capillary interaction resulting in the formation of large fractal aggregates. At high compression, these layers contain holes that seem very compressible. As a result, the surface pressure isotherms show a smaller surface pressure jump than for other mixtures.     

The characterization of polymer interfaces by fluorescence decay measurements

Fluorescence decay measurements of energy transfer between donor (D) and acceptor (A) chromophores covalently attached to polymers can provide rich information about a polymer system. Here we use these techniques to study two quite different polymer phenomena. The first involves the diffusion of polymer molecules across the interfaces created during latex film formation. We are able to determine diffusion coefficients for this process. The second involves the phase separation which occurs in mixtures of homopolymers and graft copolymers. Here we are able to show that where a component of the graft is highly incompatible with the homopolymer matrix, interconnected domains of very small size can form. Under certain circumstances fluorescence decay measurements in conjunction with the recent model for “energy transfer in restricted geometrics” can be used to map out the size and shape of these domains.     

Emulsification of partially miscible liquids using colloidal particles: nonspherical and extended domain structures

We present microscopy studies of particle-stabilized emulsions with unconventional morphologies. The emulsions comprise pairs of partially miscible fluids and are stabilized by colloids. Alcohol-oil mixtures are employed; silica colloids are chemically modified so that they have partial wettability. We create our morphologies by two distinct routes: starting with a conventional colloid-stabilized emulsion or starting in the single-fluid phase with the colloids dispersed. In the first case temperature cycling leads to the creation of extended fluid domains built around some of the initial fluid droplets. In the second case quenching into the demixed region leads to the formation of domains which reflect the demixing kinetics. The structures are stable due to a jammed, semisolid, multilayer of colloids on the liquid-liquid interface. The differing morphologies reflect the roles in formation of the arrested state of heterogeneous and homogeneous nucleation and spinodal decomposition. The latter results in metastable, bicontinuous emulsions with frozen interfaces, at least for the thin-slab samples, investigated here.     

Hydrodynamic effects on spinodal decomposition kinetics in planar lipid bilayer membranes

The formation and dynamics of spatially extended compositional domains in multicomponent lipid membranes lie at the heart of many important biological and biophysical phenomena. While the thermodynamic basis for domain formation has been explored extensively in the past, domain growth in the presence of hydrodynamic interactions both within the (effectively) two-dimensional membrane and in the three-dimensional solvent in which the membrane is immersed has received little attention. In this work, we explore the role of hydrodynamic effects on spinodal decomposition kinetics via continuum simulations of a convective Cahn-Hilliard equation for membrane composition coupled to the Stokes equation. Our approach explicitly includes hydrodynamics both within the planar membrane and in the three-dimensional solvent in the viscously dominated flow regime. Numerical simulations reveal that dynamical scaling breaks down for critical lipid mixtures due to distinct coarsening mechanisms for elongated versus more isotropic compositional lipid domains. The breakdown in scaling should be readily observable in experiments on model membrane systems.     

Modular Design of Domain Assembly in Porous Coordination Polymer Crystals via Reactivity-Directed Crystallization Process

The mesoscale design of domain assembly is crucial for controlling the bulk properties of solids. Herein, we propose a modular design of domain assembly in porous coordination polymer crystals via exquisite control of the kinetics of the crystal formation process. Employing precursors of comparable chemical reactivity affords the preparation of homogeneous solid-solution type crystals. Employing precursors of distinct chemical reactivity affords the preparation of heterogeneous phase separated crystals. We have utilized this reactivity-directed crystallization process for the facile synthesis of mesoscale architecture which are either solid-solution or phase-separated type crystals. This approach can be also adapted to ternary phase-separated type crystals from one-pot reaction. Phase-separated type frameworks possess unique gas adsorption properties that are not observed in single-phasic compounds. The results shed light on the importance of crystal formation kinetics for control of mesoscale domains in order to create porous solids with unique cooperative functionality.     

Late stage of the phase-separation process: coalescence-induced coalescence, gravitational sedimentation, and collective evaporation mechanisms

We study the separation in the binary and ternary mixtures of the water/surfactant C12E5/polymer PEG system. The phase separation in the mixtures at late stages is governed by two distinct mechanisms: the coalescence-induced coalescence and the droplet evaporation mechanism. We show that when the coalescence-induced coalescence process is globally terminated in the sample consisting of a dense system of domains, another mechanism, which we call the collective droplet evaporation, starts to dominate. It manifests itself as a front of "evaporating" domains, which propagates at constant speed in the system. We show that the collective evaporation is induced by the gravitational drift of large droplets.     

Ligand-mediated formation of Cu/metal oxide hybrid nanocrystals with tunable number of interfaces

Combining domains of different chemical nature within the same hybrid material through the formation of heterojunctions provides the opportunity to exploit the properties of each individual component within the same nano-object; furthermore, new synergistic properties will often arise as a result of unique interface interactions. However, synthetic strategies enabling precise control over the final architecture of multicomponent objects still remain scarce for certain classes of materials. Herein, we report on the formation of Cu/MO_x (M = Ce, Zn and Zr) hybrid nanocrystals with a tunable number of interfaces between the two domains. We demonstrate that the organic ligands employed during the synthesis play a key role in regulating the final configuration. Finally, we show that the synthesized nanocrystals serve as materials platforms to investigate the impact of the Cu/metal oxide interfaces in applications by focusing on the electrochemical CO₂ reduction reaction as one representative example.

We report on the formation of Cu/metal oxide hybrid nanocrystals with a tunable number of interfaces between the two domains. We demonstrate that the organic ligands employed during the synthesis play a key role in regulating the final configuration.     

Dipeptide formation on engineered hybrid peptide synthetases

BACKGROUND: Nonribosomal peptide synthetases (NRPSs) are modular 'megaenzymes' that catalyze the assembly of a large number of bioactive peptides using the multiple carrier thiotemplate mechanism. The modules comprise specific domains that act as distinct units to catalyze specific reactions associated with substrate activation, modification and condensation. Such an arrangement of biosynthetic templates has evoked interest in engineering novel NRPSs. RESULTS: We describe the design and construction of a set of dimodular hybrid NRPSs. By introducing domain fusions between adenylation and thiolation (PCP) domains we designed synthetic templates for dipeptide formation. The predicted dipeptides, as defined by the specificity and arrangement of the adenylation domains of the constructed templates, were synthesized in vitro. The effect of the intramolecular fusion was investigated by determining kinetic parameters for substrate adenylation and thiolation. The rate of dipeptide formation on the artificial NRPSs is similar to that of natural templates. CONCLUSIONS: Several new aspects concerning the tolerance of NRPSs to domain swaps can be deduced. By choosing the fusion site in the border region of adenylation and PCP domains we showed that the PCP domain exhibits no general substrate selectivity. There was no suggestion that selectivity of the condensation reaction was biased towards the donor amino acid, whereas at the acceptor position there was a size-determined selection. In addition, we demonstrated that a native elongation module can be converted to an initiation module for peptide-bond formation. These results represent the first example of rational de novo synthesis of small peptides on engineered NRPSs.     

Phase separation and fractal domain formation in phospholipid/diacetylene-supported lipid bilayers

Phase separation in lipid bilayers is a phenomenon dependent on many environmental parameters such as pH, temperature, ionic strength, and pressure. Its importance in biological systems is reflected by the fact that it has been implicated in the spatial reorganization of plasma membranes, which leads to signaling and stimulation. Here, we present the study of phase separation, domain formation, and domain morphology of supported lipid bilayers composed of mixtures of diacetylene lipids and phospholipids. We have used high-resolution fluorescence and atomic force microscopy to characterize the phase separation between these lipids, and have found that at temperatures below 40 degrees C diacetylene molecules form fractal-like domains. These molecules aggregate in tetralayer stacks with an average monolayer thickness of 3 nm. Boundary and area fractal dimensions were calculated to quantify the domain growth and morphology. A transition from dendritic to dense branching growth was observed as the relative diacetylene concentration was increased. The ability to tailor the growth pattern by changing the relative amount of diacetylene molecules makes this a useful model system for the study of nonequilibrium growth phenomena. In addition, we have explored the possibility of promoting diacetylene domain nucleation through the use of nanostructured surfaces. We found that nanoscale perturbations acted as nucleation sites and modified the growth pattern of diacetylene domains. Phase separation induced by nanometer-scale perturbations could prove useful in selectively positioning lipid patches with specific compositions.     

Scaffold-independent analysis of RNA-protein interactions: the Nova-1 KH3-RNA complex

We describe a method to analyze the sequence specificity of an RNA-binding domain. The method, which we have named scaffold-independent analysis, reports on the specificity for each nucleotide position within an RNA target, uncoupled from the surrounding structural and sequence context. We expect this information to improve our understanding of protein-RNA interfaces in ssRNA binding domains (e.g., KH or RRM domains) and to be useful to the design of novel protein-RNA recognition surfaces. Our NMR binding assays using the third KH domain of the Nova-1 protein provide a proof-of-principle for the method and novel information on the specificity of this domain for its RNA targets.     

DPD Simulations of PMMA-Oleic Acid Mixture Behaviour in Organic Capped Nanoparticle Based Polymer Nanocomposite

Dissipative Particle Dynamics has been used to investigate the different morphology of polymer nanocomposites. Such a study was addressed to the definition of a suitable tool for understanding the distribution of oleic acid (OA) capped nanoparticles embedded into poly-methylmethacrylate (PMMA) matrix for the formation of nanocomposite materials. In particular, simulations of PMMA/OA mixtures at different composition have exhibited the self-assembly of amphiphiles to form separated nanosized domains with different morphologies going from spheres, to tubules up to the formation of continuous planar sheets as the OA composition increases. On the other hand, simulations carried out on nanocomposite systems have shown that NPs do not perturb the observed phase behaviour of PMMA/OA mixtures. In fact, at low OA compositions nanoparticles are confined in the spherical lipid domains to form NP clusters, while at high OA composition NPs appear homogeneously distributed in the continuous lipid domain.     

Domain nucleation in the contact layer at an interface of water and a polarizable substrate

The growth of a molecular water film on the basic plane of a silver iodide monocrystal is studied through computer simulation. Decomposition into domains with spontaneous polarization is observed in the contact layer of the film at the interface with the substrate. The formation of domains is found to be sharply enhanced on a model substrate with the double polarizability of iodine ions; heteropolarization interactions caused by the formation of domain structures increase the film’s coupling with the substrate. It is demonstrated that the vapor pressure needed for molecular film growth is reduced appreciably via heteropolarization interactions.     

Two-component membrane material properties and domain formation from dissipative particle dynamics

The material parameters (area stretch modulus and bending rigidity) of two-component amphiphilic membranes are determined from dissipative particle dynamics simulations. The preferred area per molecule for each species is varied so as to produce homogeneous mixtures or nonhomogeneous mixtures that form domains. If the latter mixtures are composed of amphiphiles with the same tail length, but different preferred areas per molecule, their material parameters increase monotonically as a function of composition. By contrast, mixtures of amphiphiles that differ in both tail length and preferred area per molecule form both homogeneous and nonhomogeneous mixtures that both exhibit smaller values of their material properties compared to the corresponding pure systems. When the same nonhomogeneous mixtures of amphiphiles are assembled into planar membrane patches and vesicles, the resulting domain shapes are different when the bending rigidities of the domains are sufficiently different. Additionally, both bilayer and monolayer domains are observed in vesicles. We conclude that the evolution of the domain shapes is influenced by the high curvature of the vesicles in the simulation, a result that may be relevant for biological vesicle membranes.