15N NMR chemical shifts for the identification of dipyrrolic structures

A variety of dipyrromethanes and dipyrromethenes have been prepared, and their 15N NMR chemical shifts have been measured by two-dimensional correlation to 1H NMR signals. The nitrogen atoms in five examples of dipyrromethanes consistently exhibit chemical shifts around -231 ppm, relative to nitromethane. Seven examples of hydrobromide salts of meso-unsubstituted dipyrromethenes consistently display 15N chemical shifts around -210 ppm, while their corresponding zinc(II) complexes exhibit chemical shifts around -170 ppm. The presence of electron-withdrawing substituents on one of the pyrrolic rings of dipyrromethenes affects the chemical shifts of both of the nitrogen nuclei in the molecule. Boron difluoride complexes of meso-unsubstituted dipyrromethenes display 15N chemical shifts around -190 ppm. Two examples of free-base dipyrromethenes bearing substituents at the meso-position exhibit 15N chemical shifts at approximately -156 ppm, and for the zinc complexes of these compounds at -162 ppm. One-bond nitrogen-hydrogen coupling constants, when measurable, were consistently in the range of -96 Hz. Since the measured 15N chemical shifts have such a high regularity correlated to structure, they can be used as diagnostic indications for identifying the structure of dipyrrolic compounds.     

On the aromaticity and Meisenheimer rearrangement of strained heterocyclic amine, phosphine, and arsine oxides

A theoretical investigation (AIM and ELF analyses together with NMR chemical shifts) has been conducted for three-membered heterocycle (N, P, and As) oxides. An aromatic stabilization was found for the P and As rings. However, the N derivatives displayed a net negative hyperconjugation in the N-O bond formation, without ring aromaticity observed for their electronic properties. The calculated delta(C) and delta(H) shifts also supported the ring delocalization for the P and As unsaturated heterocycle oxides (delta(C) approximately 165 and delta(H) approximately 9 ppm). In addition, these values for 1H-azirine oxide resembled standard C=C double bond values (delta(C) approximately 130 and delta(H) approximately 7 ppm). The different behavior for the N oxides was also observed in their Meisenheimer rearrangement (MR). All the reaction paths, yielding the corresponding hydroxyl structures, were exothermic (G2 method). However, the N derivatives showed the lowest values for activation enthalpy, DeltaH(). The C=C bond influence in the MR was slight, with the same DeltaH values for the saturated and unsaturated paths. This rearrangement for the P and As oxides yielded TSs closer to the reactives; however, the corresponding TSs resembled the products for the N-derivatives. The different reaction paths have been examined by their corresponding AIM and ELF analyses at the B3LYP/6-311G level.     

Inhibition and enhancement of resonance as studied by 13C nuclear magnetic resonance spectroscopy

¹³C chemical shifts are reported for a series of 2-substituted 1,3-dimethylbenzenes: comparisons of these values with those for the corresponding monosubstituted benzenes reveal, in some cases, large differences in the para-carbon substituent chemical shifts, which are attributable to steric hindrance of resonance. The questions of steric enhancement of resonance, and methoxy group conformation in certain anisoles are also studied by the ¹³C NMR technique. Studies of selected 2-substituted fluorenes are also reported, and substituent chemical shifts at carbon-7 (traversing eight bonds) of greater than 2ppm are observed. These effects are consistently greater than those reported for the corresponding biphenyl compounds, and are associated with planarity-enforced enhancement of resonance.     

Research in the azole series. 103. Synthesis and 13C NMR study of pyrazole-4-carboxaldehydes

Ten new pyrazoles have been prepared and their ¹³C nmr chemical shifts compared with those of twelve other pyrazoles, some of them prepared purposely for this study. The chemical shifts are discussed statistically assuming that they are additive. A formyl group in the position 4 of the pyrazole ring produces a large effect on carbon C₄ (SCS = 17.3 ppm) and medium effects on carbons C₃ (SCS = 1.9 ppm) and C₅ (SCS = 3.8 ppm). The azines derived from pyrazole-4-carboxaldehydes are of the E,E-configuration.     

13C NMR study on the methoxy carbon chemical shifts in chloro-substituted anisoles and guaiacols

The ¹³C NMR chemical shifts of methoxy carbons in chlorinated anisoles and guaiacols have been measured for acetone-d₆ solutions. Multiple linear regression analysis, and also ‘simple sum rule’ calculations, have been used to estimate the effects of the chlorine atoms (the position and degree of substitution) on the chemical shifts. The most important effects have shown to be due to the chlorine atoms adjacent to the methoxy and hydroxy substituents. For chlorinated guaiacols, the greatest effect is due to the chlorine atom adjacent to the methoxy group. For chlorinated anisoles, the substituents adjacent to the methoxy group (2,6-disubstitution) cause large effects. For both groups of compounds, the chemical shifts are also greatly influenced by the number of chlorine substituents. Using the three most important independent variables, the average differences between the observed and calculated chemical shifts are ca 0.2 ppm for anisoles and 0.1 ppm for guaiacols. For chloroguaiacols, the corresponding difference was only 0.1 ppm when calculations were performed using single substituent effects.     

The proton and carbon-13 NMR spectra of thioxanthone sulfoxide,thioxanthone sulfone and related ylides - chemical shift assignments

The proton and carbon-13 nmr spectra of thioxanthone sulfoxide, thioxanthone sulfone, thioxanthonium bis(carbomethoxyl)methylide and thioxanthonium bis(carbomethoxyl)methylide S-oxide are assigned using 2-D nmr techniques and compared to those of thioxanthone. The pseudo-equatorial methylide fragment shields C4a/5a by ? 11 ppm relative to the corresponding sulfoxide and by ? 4 ppm relative to thioxanthone. The pseudo-axial methylide fragment in the oxysulfonium ylide has the same effect upon C4a/5a as does the pseudo-axial oxygen of the corresponding sulfone. The sulfoxide and the sulfonium ylide have similar chemical shifts for C2/7 (? 131 ppm) as do the sulfone and oxysulfonium ylide (? 133 ppm).     

Nitrogen-15 magnetic resonance spectroscopy XVI—natural-abundance spectra of aromatic amines

The ¹⁵N chemical shifts of aniline, the toluidines, xylidines, and several halogen and oxygen substituted anilines have been measured at the natural abundance level of ¹⁵N. Substituent parameters obtained by multiple regression analysis show that the methyl group induces comparable upfield shifts at the ortho and para positions (2·37 and 2·55 ppm/methyl, respectively) and a small (0·77 ppm/methyl) upfield shift at the meta position. The chemical shifts correlate reasonably well with ¹⁹F shifts of similarly substituted fluorobenzenes, with C-1 of the anilines themselves and with Hammett sigma values. While the shifts of C-methyl substituted anilines do not correlate with the methyl resonances of corresponding polymethylbenzenes, those of the halo- and alkoxyanilines show a reasonable parallelism with corresponding ¹³C-methyl shifts. The results are interpreted in terms of possible modes of transmission of electron density in an alternating and additive manner through the sigma framework.     

The determination of sulfoxide configuration in six-membered rings using NMR spectroscopy and DFT calculations

Cyclic six-membered ring sulfoxides and sulfones were prepared by a stepwise in situ oxidation of the corresponding sulfides with meta-chloroperbenzoic acid in an NMR tube. The oxidation was followed by NMR spectra and the ¹H and ¹³C NMR data were collected. The geometries of all of the compounds were optimized using the DFT B3LYP/6-31G^∗∗ method and the ¹³C and ¹H NMR chemical shifts were calculated for geometry-optimized structures with the DFT B3LYP/6-31++G^∗∗ method. The calculated ¹³C NMR chemical shifts induced by oxidation (Δδ values) are in very good agreement with the experimental data and can be used to determine the oxidation state of the sulfur atom (-S-, -SO-, -SO₂-). The characteristic differences of the induced oxidation chemical shifts of carbon atoms at the α- and β-position to sulfur were successfully used for distinguishing between the diastereoisomeric sulfoxides.     

A joined theoretical-experimental investigation on the 1H and 13C NMR signatures of defects in poly(vinyl chloride)

1H and 13C chemical shifts of PVC chains have been evaluated using quantum chemistry methods in order to evidence and interpret the NMR signatures of chains bearing unsaturated and branched defects. The geometrical structures of the stable conformers have been determined using molecular mechanics and the OPLS force field and then density functional theory with the B3LYP functional and the 6-311G(d) basis set. The nuclear shielding tensor has been calculated at the coupled-perturbed Kohn-Sham level (B3LYP exchange-correlation functional) using the 6-311+G(2d,p) basis set. The computational scheme accounts for the large number of stable conformers of the PVC chains, and average chemical shifts are evaluated using the Maxwell-Boltzmann distribution. Moreover, the chemical shifts are corrected for the inherent and rather systematic errors of the method of calculation by employing linear regression equations, which have been deduced from comparing experimental and theoretical results on small alkane model compounds containing Cl atoms and/or unsaturations. For each type of defect, PVC segments presenting different tacticities have been considered because it is known from linear PVC chains that the racemic (meso) dyads are characterized by larger (smaller) chemical shifts. NMR signatures of unsaturations in PVC chains have been highlighted for the internal -CH=CH- and -CH=CCl- units as well as for terminal unsaturations like the chloroallylic -CH=CH-CH2Cl group. In particular, the 13C chemical shifts of the two sp2 C atoms are very close for the chloroallylic end group. The CH2 and CHCl units surrounding an unsaturation present also specific 13C chemical shifts, which allow distinguishing them from the others. In the case of the proton, the CH2 unit of the -CHCl-CH2-CCl=CH- segment presents a larger chemical shift (2.6-2.7 ppm), while some CHCl units close to the -CH=CH- unsaturations appear at rather small chemical shifts (3.7 ppm). The -CH2Cl and -CHCl-CH2Cl branches also display specific signatures, which result in large part from modifications of the equilibrium conformations and their reduced number owing to the increased steric interactions. These branches lead to the appearance of 13C peaks at lower field associated either to the CH unit linking the -CH2Cl and -CHCl-CH2Cl branches (50 ppm) or to the CHCl unit of the ethyl branches (60 ppm). The corresponding protons resonate also at specific frequencies: 3.5-4.0 ppm for the -CH2Cl branch or 3.8-4.2 ppm for the terminal unit of the -CHCl-CH2Cl branch. Several of these signatures have been detected in the experimental 1H and 13C NMR spectra and are consistent with the reaction mechanisms.     

The determination of sulfoxide configuration in five-membered rings using NMR spectroscopy and DFT calculations

Cyclic five-membered ring sulfoxides and sulfones were prepared by a stepwise in situ oxidation of the corresponding sulfides with meta-chloroperbenzoic acid in an NMR tube. The oxidation was followed by NMR and both ¹H and ¹³C NMR data were collected. The geometries of all of the compounds were optimized using the DFT B3LYP/6-31G⁷ method and the ¹³C and ¹H chemical shifts were calculated for geometry-optimized structures with the DFT B3LYP/6-31++G⁷ method. The calculated ¹³C chemical shifts induced by oxidation (Δδ values) were in very good agreement with the experimental data and could be used to determine the oxidation state of the sulfur atom (–S–, –SO–, –SO₂–). The characteristic differences of the induced oxidation chemical shifts of the carbon atoms in the α-position and β-position to sulfur were successfully used to distinguish between the diastereoisomeric sulfoxides and allowed configuration determination.     

15N NMR substituent effects in pyridines and pyrimidines

¹⁵N chemical shifts of 32 substituted pyridines and 19 substituted pyrimidines, together with additional data from the literature, are used to evalute substituent increments, A_i and A_ik, in the respective series. Differential chemical shifts, Δδ(N), correlate with corresponding Δδ(C) values whereby, on the ppm scale, nitrogen shifts are approximately three times more sensitive towards substituents than carbon shifts. The ¹⁵N increments have proven additive and useful for assignment purposes.     

A solid state 13C NMR, crystallographic, and quantum chemical investigation of chemical shifts and hydrogen bonding in histidine dipeptides

We report the first solid-state NMR, crystallographic, and quantum chemical investigation of the origins of the 13C NMR chemical shifts of the imidazole group in histidine-containing dipeptides. The chemical shift ranges for Cgamma and Cdelta2 seen in eight crystalline dipeptides were very large (12.7-13.8 ppm); the shifts were highly correlated (R2= 0.90) and were dominated by ring tautomer effects and intermolecular interactions. A similar correlation was found in proteins, but only for buried residues. The imidazole 13C NMR chemical shifts were predicted with an overall rms error of 1.6-1.9 ppm over a 26 ppm range, by using quantum chemical methods. Incorporation of hydrogen bond partner molecules was found to be essential in order to reproduce the chemical shifts seen experimentally. Using AIM (atoms in molecules) theory we found that essentially all interactions were of a closed shell nature and the hydrogen bond critical point properties were highly correlated with the N...H...O (average R2= 0.93) and Nepsilon2...H...N (average R2= 0.98) hydrogen bond lengths. For Cepsilon1, the 13C chemical shifts were also highly correlated with each of these properties (at the Nepsilon2 site), indicating the dominance of intermolecular interactions for Cepsilon1. These results open up the way to analyzing 13C NMR chemical shifts, tautomer states (from Cdelta2, Cepsilon1 shifts), and hydrogen bond properties (from Cepsilon1 shifts) of histidine residue in proteins and should be applicable to imidazole-containing drug molecules bound to proteins, as well.     

Molecular conformations at the cellulose–water interface

¹³C-NMR chemical shifts were measured for C-4 and C-6 in a collection of eight crystalline glucoses and glucosides. The influence of the hydroxymethyl conformation was greater at C-4 than at C-6, with mean chemical shifts for gauche–trans molecules displaced 3.1 ppm (C-4) and 2.5 ppm (C-6) relative to gauche–gauche molecules. This information was used to interpret ¹³C-NMR spectra of crystalline celluloses. Chemical shifts for C-4 in the crystallite cores of celluloses I and II differed by just 0.2 ppm, but the corresponding chemical shifts for well-ordered crystallite surfaces differed by 3.0 ppm. The separation between crystallite-surface signals was attributed to different hydroxymethyl conformations at the cellulose–water interface, i.e., gauche–gauche and gauche–trans on crystallites of cellulose I and cellulose II, respectively. A broad C-4 signal in the spectrum of cellulose II indicated gauche–gauche conformations in disordered cellulose. Chemical shifts for C-6 were consistent with these conformations.     

Selective chemical shift assignment of B800 and B850 bacteriochlorophylls in uniformly [13C,15N]-labeled light-harvesting complexes by solid-state NMR spectroscopy at ultra-high magnetic field

The electronic ground states of the bacteriochlorophyll a type B800 and type B850 in the light-harvesting 2 complex of Rhodopseudomonas acidophila strain 10050 have been characterized by magic angle spinning (MAS) dipolar (13)C-(13)C correlation NMR spectroscopy. Uniformly [(13)C,(15)N] enriched light-harvesting 2 (LH2) complexes were prepared biosynthetically, while [(13)C,(15)N]-B800 LH2 complexes were obtained after reconstitution of apoprotein with uniformly [(13)C,(15)N]-enriched bacteriochlorophyll cofactors. Extensive sets of isotropic (13)C NMR chemical shifts were obtained for each bacteriochlorin ring species in the LH2 protein. (13)C isotropic shifts in the protein have been compared to the corresponding shifts of monomeric BChl a dissolved in acetone-d(6). Density functional theory calculations were performed to estimate ring current effects induced by adjacent cofactors. By correction for the ring current shifts, the (13)C shift effects due to the interactions with the protein matrix were resolved. The chemical shift changes provide a clear evidence for a global electronic effect on the B800 and B850 macrocycles, which is attributed to the dielectrics of the protein environment, in contrast with local effects due to interaction with specific amino acid residues. Considerable shifts of -6.2 < Deltasigma < +5.8 ppm are detected for (13)C nuclei in both the B800 and the B850 bacteriochlorin rings. Because the shift effects for the B800 and B850 are similar, the polarization of the electronic ground states induced by the protein environment is comparable for both cofactors and corresponds with a red shift of approximately 30 nm relative to the monomeric BChl dissolved in acetone-d(6). The electronic coupling between the B850 cofactors due to macrocycle overlap is the predominant mechanism behind the additional red shift in the B850.     

Synthesis and carbon-13 nuclear magnetic resonance spectroscopy of 5,6-dihydro-2-methyl-1,4-oxathiin,trans-tetrahydro-1,4-benzoxathiin, 1,4-tetrahydro-[9,10]benzoxathiin,the 4-oxides, 4,4-dioxides and related acyclic compounds

The results of a ¹³C NMR spectral investigation involving 5,6-dihydro-1,4-oxathiins, 1,4-tetrahydro[9,10]benzoxathiin, trans-tetrahydro-1,4-benzoxathiin, and the corresponding sulfoxides and sulfones are reported. An interpretation involving a dipolar structure with (2p→2p)π conjugation as opposed to (2p→3d)π interactions with the vinyloxy sulfides seems consistent with trends in the ¹³C NMR shifts. For the sulfoxides and sulfones, the substitutent-induced chemical shift (SCS) effects at the β vinylic carbons (βSO and βSO₂ effects) are considerably less than those at sp³ carbons. The γSO and γSO₂ values at the sp²γ carbons indicate deshielding, in contrast to the shielding at the sp³ carbons.     

13C-NMR-Spektren isomerer Diazaphenanthrene

The ¹³C chemical shifts of eleven isomeric diazaphenathrenes (1.5-? 1.10-, 2.7-, 4.5-? 4.7-, and 5.6-DAP) have been determined and iteratively assigned by means of comparison with suitable model compounds. The data obtained (132 points) were used to test the relationship between ¹³C chemical shifts and HMO charge densities. The best correlation with a standard deviation S(E) = 4.8 ppm was found for the chemical shifts, relative to phenanthrene, of tertiary carbons. The different slopes for correlations of tertiary and quarternary carbons (275–300 vs 540–550 ppm/electron) are most probably due to different ΔE values for both types of carbons.     

Observed and calculated 1H and 13C chemical shifts induced by the in situ oxidation of model sulfides to sulfoxides and sulfones

A series of model sulfides was oxidized in the NMR sample tube to sulfoxides and sulfones by the stepwise addition of meta‐chloroperbenzoic acid in deuterochloroform. Various methods of quantum chemical calculations have been tested to reproduce the observed ¹H and ¹³C chemical shifts of the starting sulfides and their oxidation products. It has been shown that the determination of the energy‐minimized conformation is a very important condition for obtaining realistic data in the subsequent calculation of the NMR chemical shifts. The correlation between calculated and observed chemical shifts is very good for carbon atoms (even for the ‘cheap’ DFT B3LYP/6‐31G* method) and somewhat less satisfactory for hydrogen atoms. The calculated chemical shifts induced by oxidation (the Δδ values) agree even better with the experimental values and can also be used to determine the oxidation state of the sulfur atom (? S? , ? SO? , ? SO₂? ). Copyright © 2010 John Wiley & Sons, Ltd.     

Computational studies of 13C NMR chemical shifts of saccharides

The (13)C NMR chemical shifts for alpha-D-lyxofuranose, alpha-D-lyxopyranose (1)C(4), alpha-D-lyxopyranose (4)C(1), alpha-D-glucopyranose (4)C(1), and alpha-D-glucofuranose have been studied at ab initio and density-functional theory levels using TZVP quality basis set. The methods were tested by calculating the nuclear magnetic shieldings for tetramethylsilane (TMS) at different levels of theory using large basis sets. Test calculations on the monosaccharides showed B3LYP(TZVP) and BP86(TZVP) to be cost-efficient levels of theory for calculation of NMR chemical shifts of carbohydrates. The accuracy of the molecular structures and chemical shifts calculated at the B3LYP(TZVP) level is comparable to those obtained at the MP2(TZVP) level. Solvent effects were considered by surrounding the saccharides by water molecules and also by employing a continuum solvent model. None of the applied methods to consider solvent effects was successful. The B3LYP(TZVP) and MP2(TZVP)(13)C NMR chemical shift calculations yielded without solvent and rovibrational corrections an average deviation of 5.4 ppm and 5.0 ppm between calculated and measured shifts. A closer agreement between calculated and measured chemical shifts can be obtained by using a reference compound that is structurally reminiscent of saccharides such as neat methanol. An accurate shielding reference for carbohydrates can be constructed by adding an empirical constant shift to the calculated chemical shifts, deduced from comparisons of B3LYP(TZVP) or BP86(TZVP) and measured chemical shifts of monosaccharides. The systematic deviation of about 3 ppm for O(1)H chemical shifts can be designed to hydrogen bonding, whereas solvent effects on the (1)H NMR chemical shifts of C(1)H were found to be small. At the B3LYP(TZVP) level, the barrier for the torsional motion of the hydroxyl group at C(6) in alpha-D-glucofuranose was calculated to 7.5 kcal mol(-1). The torsional displacement was found to introduce large changes of up to 10 ppm to the (13)C NMR chemical shifts yielding uncertainties of about +/-2 ppm in the chemical shifts.     

Natural abundance 17O NMR spectroscopy of heteroaromatic Nitro compounds

The ¹⁷O chemical shift data, at natural abundance, for selected nitroquinolines, nitroindoles, nitroindazoles and nitrothiophenes are reported. In the absence of a peri or a lone-pair repulsion effect, the nitroquinolines' chemical shifts differ little from those of their carbocyclic analogs. However, the signal for 5-nitroquinoline, 2 , is deshielded by 25 ppm compared to 6-nitroquinoline, 1 , and the ¹⁷O nucleus in 8-nitroquinoline, 3 , is deshielded by 49 ppm compared to that in 1 . Both these shifts are attributed to rotation of the nitro group from the plane of the heteroaromatic ring arising from peri hydrogen interaction and lone pair repulsion, respectively. The signals for nitro groups on electron excessive ring systems (e.g., indoles and thiophenes) are shielded relative to corresponding ones in electron deficient heterocyclic ring system analogs. The chemical shifts for the π-excessive systems are interpreted in terms of electronic effects.     

How reliable are GIAO calculations of 1H and 13C NMR chemical shifts? A statistical analysis and empirical corrections at DFT (PBE/3z) level

Reliability of calculated (1)H and (13)C NMR chemical shifts for various classes of organic compounds obtained with gauge-invariant atomic orbital (GIAO) approach has been studied at the PBE/3ζ level (as implemented in PRIRODA code) using linear regression analysis with experimental data. Empirical corrections for the calculated chemical shifts δ(H,calc) = δ(PBE/3ζ) - 0.08 ppm (RMS 0.18 ppm, MAD 0.66 ppm) and δ(C,calc) = δ(PBE/) (3) (ζ) - 6.35 ppm (RMS 3.09 ppm, MAD 9.42 ppm) have been developed using the sets of 263 and 308 experimental values for (1)H and (13)C chemical shifts, respectively. The confidence intervals of NMR chemical shifts at 95% confidence probability are δ(H,calc) ± 0.35 ppm for (1)H and δC,calc) ± 6.05 ppm for (13)C.